RNA–Protein interactions for RNA: ENST00000523261.1

NKX3-1-202, Transcript of NK3 homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NKX3-1, Length 713 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-202ENST00000523261 HSF2BPO75031 334 aa13.9□□□□□ -0.18
NKX3-1-202ENST00000523261 HOXC4P09017 264 aaPredicted RBP13.9□□□□□ -0.18
NKX3-1-202ENST00000523261 ZNF28P17035 718 aa13.9□□□□□ -0.18
NKX3-1-202ENST00000523261 ACVRL1P37023 503 aa13.9□□□□□ -0.18
NKX3-1-202ENST00000523261 CXCR3P49682 368 aa13.9□□□□□ -0.18
NKX3-1-202ENST00000523261 LIG3P49916 1009 aa13.9□□□□□ -0.18
NKX3-1-202ENST00000523261 SUOXP51687 545 aa13.9□□□□□ -0.18
NKX3-1-202ENST00000523261 PDCLQ13371 301 aa13.9□□□□□ -0.18
NKX3-1-202ENST00000523261 MEA1Q16626 185 aa13.9□□□□□ -0.18
NKX3-1-202ENST00000523261 TSR1Q2NL82 804 aaKnown RBP13.9□□□□□ -0.18
NKX3-1-202ENST00000523261 CPZQ66K79 652 aa13.9□□□□□ -0.18
NKX3-1-202ENST00000523261 SP5Q6BEB4 398 aaPredicted RBP13.9□□□□□ -0.18
NKX3-1-202ENST00000523261 GUF1Q8N442 669 aaKnown RBP13.9□□□□□ -0.18
NKX3-1-202ENST00000523261 RNF31Q96EP0 1072 aa13.9□□□□□ -0.18
NKX3-1-202ENST00000523261 HMCESQ96FZ2 354 aa13.9□□□□□ -0.18
NKX3-1-202ENST00000523261 C1orf74Q96LT6 269 aa13.9□□□□□ -0.18
NKX3-1-202ENST00000523261 NT5C1BQ96P26 610 aa13.9□□□□□ -0.18
NKX3-1-202ENST00000523261 MFRPQ9BY79 579 aa13.9□□□□□ -0.18
NKX3-1-202ENST00000523261 GSDMCQ9BYG8 508 aa13.9□□□□□ -0.18
NKX3-1-202ENST00000523261 ZMYND15Q9H091 742 aa13.9□□□□□ -0.18
NKX3-1-202ENST00000523261 WDCPQ9H6R7 721 aa13.9□□□□□ -0.18
NKX3-1-202ENST00000523261 MTMR6Q9Y217 621 aa13.9□□□□□ -0.18
NKX3-1-202ENST00000523261 ST14Q9Y5Y6 855 aa13.9□□□□□ -0.18
NKX3-1-202ENST00000523261 NIPBLQ6KC79 2804 aaeCLIP13.89□□□□□ -0.19
NKX3-1-202ENST00000523261 LRCH4O75427 683 aa13.89□□□□□ -0.19
NKX3-1-202ENST00000523261 YEATS4O95619 227 aa13.89□□□□□ -0.19
NKX3-1-202ENST00000523261 AK4P27144 223 aaPredicted RBP13.89□□□□□ -0.19
NKX3-1-202ENST00000523261 TRIM23P36406 574 aa13.89□□□□□ -0.19
NKX3-1-202ENST00000523261 ILF3Q12906 894 aaKnown RBP eCLIP13.89□□□□□ -0.19
NKX3-1-202ENST00000523261 RAPGEF1Q13905 1077 aa13.89□□□□□ -0.19
NKX3-1-202ENST00000523261 BRMS1LQ5PSV4 323 aa13.89□□□□□ -0.19
NKX3-1-202ENST00000523261 RESP18Q5W5W9 173 aa13.89□□□□□ -0.19
NKX3-1-202ENST00000523261 SLC6A19Q695T7 634 aa13.89□□□□□ -0.19
NKX3-1-202ENST00000523261 C6orf15Q6UXA7 325 aaPredicted RBP13.89□□□□□ -0.19
NKX3-1-202ENST00000523261 LYSMD3Q7Z3D4 306 aa13.89□□□□□ -0.19
NKX3-1-202ENST00000523261 DRC7Q8IY82 874 aa13.89□□□□□ -0.19
NKX3-1-202ENST00000523261 PPM1KQ8N3J5 372 aa13.89□□□□□ -0.19
NKX3-1-202ENST00000523261 ULBP3Q9BZM4 244 aa13.89□□□□□ -0.19
NKX3-1-202ENST00000523261 CARS2Q9HA77 564 aaKnown RBP13.89□□□□□ -0.19
NKX3-1-202ENST00000523261 PCDH12Q9NPG4 1184 aa13.89□□□□□ -0.19
NKX3-1-202ENST00000523261 PCDHGA6Q9Y5G7 932 aa13.89□□□□□ -0.19
NKX3-1-202ENST00000523261 ANKHD1Q8IWZ3 2542 aaKnown RBP13.89□□□□□ -0.19
NKX3-1-202ENST00000523261 ANKUB1A6NFN9 424 aa13.88□□□□□ -0.19
NKX3-1-202ENST00000523261 FUCA1P04066 466 aa13.88□□□□□ -0.19
NKX3-1-202ENST00000523261 TFE3P19532 575 aaPredicted RBP13.88□□□□□ -0.19
NKX3-1-202ENST00000523261 XPAP23025 273 aaPredicted RBP13.88□□□□□ -0.19
NKX3-1-202ENST00000523261 NFKBIAP25963 317 aa13.88□□□□□ -0.19
NKX3-1-202ENST00000523261 MMP12P39900 470 aa13.88□□□□□ -0.19
NKX3-1-202ENST00000523261 GEMIN4P57678 1058 aaKnown RBP13.88□□□□□ -0.19
NKX3-1-202ENST00000523261 CHAF1BQ13112 559 aa13.88□□□□□ -0.19
NKX3-1-202ENST00000523261 SLC30A9Q6PML9 568 aa13.88□□□□□ -0.19
NKX3-1-202ENST00000523261 WDR74Q6RFH5 385 aaPredicted RBP13.88□□□□□ -0.19
NKX3-1-202ENST00000523261 LEKR1Q6ZMV7 388 aa13.88□□□□□ -0.19
NKX3-1-202ENST00000523261 SLC47A2Q86VL8 602 aa13.88□□□□□ -0.19
NKX3-1-202ENST00000523261 ZNF761Q86XN6 746 aaPredicted RBP13.88□□□□□ -0.19
NKX3-1-202ENST00000523261 GALNT6Q8NCL4 622 aa13.88□□□□□ -0.19
NKX3-1-202ENST00000523261 SLC35C1Q96A29 364 aa13.88□□□□□ -0.19
NKX3-1-202ENST00000523261 SNRNP40Q96DI7 357 aaKnown RBP13.88□□□□□ -0.19
NKX3-1-202ENST00000523261 LURAP1Q96LR2 239 aa13.88□□□□□ -0.19
NKX3-1-202ENST00000523261 GDAP1L1Q96MZ0 367 aa13.88□□□□□ -0.19
NKX3-1-202ENST00000523261 RANBP9Q96S59 729 aa13.88□□□□□ -0.19
NKX3-1-202ENST00000523261 CPXM1Q96SM3 734 aa13.88□□□□□ -0.19
NKX3-1-202ENST00000523261 ZYG11BQ9C0D3 744 aa13.88□□□□□ -0.19
NKX3-1-202ENST00000523261 TTYH3Q9C0H2 523 aa13.88□□□□□ -0.19
NKX3-1-202ENST00000523261 SUDS3Q9H7L9 328 aaPredicted RBP13.88□□□□□ -0.19
NKX3-1-202ENST00000523261 METTL14Q9HCE5 456 aaKnown RBP13.88□□□□□ -0.19
NKX3-1-202ENST00000523261 TRNAU1APQ9NX07 287 aaKnown RBP13.88□□□□□ -0.19
NKX3-1-202ENST00000523261 SIDT1Q9NXL6 827 aaKnown RBP13.88□□□□□ -0.19
NKX3-1-202ENST00000523261 ITGB1BP2Q9UKP3 347 aa13.88□□□□□ -0.19
NKX3-1-202ENST00000523261 MFHAS1Q9Y4C4 1052 aa13.88□□□□□ -0.19
NKX3-1-202ENST00000523261 ZNF451Q9Y4E5 1061 aa13.88□□□□□ -0.19
NKX3-1-202ENST00000523261 DCHS2Q6V1P9 2916 aa13.87□□□□□ -0.19
NKX3-1-202ENST00000523261 HEATR9A2RTY3 570 aa13.87□□□□□ -0.19
NKX3-1-202ENST00000523261 CETN3O15182 167 aa13.87□□□□□ -0.19
NKX3-1-202ENST00000523261 DPM1O60762 260 aa13.87□□□□□ -0.19
NKX3-1-202ENST00000523261 DIAPH2O60879 1101 aa13.87□□□□□ -0.19
NKX3-1-202ENST00000523261 SRGAP2O75044 1071 aa13.87□□□□□ -0.19
NKX3-1-202ENST00000523261 DAB1O75553 588 aa13.87□□□□□ -0.19
NKX3-1-202ENST00000523261 MAP3K6O95382 1288 aa13.87□□□□□ -0.19
NKX3-1-202ENST00000523261 CCL11P51671 97 aa13.87□□□□□ -0.19
NKX3-1-202ENST00000523261 DNM1Q05193 864 aaKnown RBP13.87□□□□□ -0.19
NKX3-1-202ENST00000523261 RAD51Q06609 339 aa13.87□□□□□ -0.19
NKX3-1-202ENST00000523261 DNASE1L3Q13609 305 aa13.87□□□□□ -0.19
NKX3-1-202ENST00000523261 CUL4AQ13619 759 aa13.87□□□□□ -0.19
NKX3-1-202ENST00000523261 UGP2Q16851 508 aa13.87□□□□□ -0.19
NKX3-1-202ENST00000523261 OLFML1Q6UWY5 402 aa13.87□□□□□ -0.19
NKX3-1-202ENST00000523261 OR10G6Q8NH81 332 aa13.87□□□□□ -0.19
NKX3-1-202ENST00000523261 PNPLA2Q96AD5 504 aa13.87□□□□□ -0.19
NKX3-1-202ENST00000523261 AHCYL2Q96HN2 611 aaKnown RBP13.87□□□□□ -0.19
NKX3-1-202ENST00000523261 NPY6RQ99463 290 aa13.87□□□□□ -0.19
NKX3-1-202ENST00000523261 RUBCNLQ9H714 662 aa13.87□□□□□ -0.19
NKX3-1-202ENST00000523261 WDR26Q9H7D7 661 aa13.87□□□□□ -0.19
NKX3-1-202ENST00000523261 ASF1BQ9NVP2 202 aa13.87□□□□□ -0.19
NKX3-1-202ENST00000523261 CNTN6Q9UQ52 1028 aa13.87□□□□□ -0.19
NKX3-1-202ENST00000523261 PCDHGB7Q9Y5F8 929 aa13.87□□□□□ -0.19
NKX3-1-202ENST00000523261 DNHD1Q96M86 4753 aa13.87□□□□□ -0.19
NKX3-1-202ENST00000523261 TSPAN11A1L157 253 aa13.86□□□□□ -0.19
NKX3-1-202ENST00000523261 RECQL5O94762 991 aaPredicted RBP13.86□□□□□ -0.19
NKX3-1-202ENST00000523261 MYL1P05976 194 aa13.86□□□□□ -0.19
NKX3-1-202ENST00000523261 ETFBP38117 255 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms