RNA–Protein interactions for RNA: ENST00000414419.6

RFFL-204, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 559 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-204ENST00000414419 CCDC50Q8IVM0 306 aa11.24□□□□□ -0.61
RFFL-204ENST00000414419 PHACTR4Q8IZ21 702 aa11.24□□□□□ -0.61
RFFL-204ENST00000414419 PLD5Q8N7P1 536 aa11.24□□□□□ -0.61
RFFL-204ENST00000414419 ZNF548Q8NEK5 533 aaPredicted RBP11.24□□□□□ -0.61
RFFL-204ENST00000414419 GLMNQ92990 594 aa11.24□□□□□ -0.61
RFFL-204ENST00000414419 SCRN2Q96FV2 425 aa11.24□□□□□ -0.61
RFFL-204ENST00000414419 NSMCE3Q96MG7 304 aa11.24□□□□□ -0.61
RFFL-204ENST00000414419 LGMNQ99538 433 aa11.24□□□□□ -0.61
RFFL-204ENST00000414419 BAG1Q99933 345 aaPredicted RBP11.24□□□□□ -0.61
RFFL-204ENST00000414419 BRD8Q9H0E9 1235 aa11.24□□□□□ -0.61
RFFL-204ENST00000414419 TFR2Q9UP52 801 aa11.24□□□□□ -0.61
RFFL-204ENST00000414419 DOLKQ9UPQ8 538 aa11.24□□□□□ -0.61
RFFL-204ENST00000414419 OR1A2Q9Y585 309 aa11.24□□□□□ -0.61
RFFL-204ENST00000414419 CSNK1G3Q9Y6M4 447 aa11.24□□□□□ -0.61
RFFL-204ENST00000414419 GOLGA6CA6NDK9 693 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 GOLGA6BA6NDN3 693 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 TMEM8BA6NDV4 472 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 K7ESM1 405 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 KCNK1O00180 336 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 PSMD11O00231 422 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 PDE2AO00408 941 aaPredicted RBP11.23□□□□□ -0.61
RFFL-204ENST00000414419 CST8O60676 142 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 HEXIM1O94992 359 aaKnown RBP11.23□□□□□ -0.61
RFFL-204ENST00000414419 RASGRP1O95267 797 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 HLA-DQB2P05538 268 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 ANXA6P08133 673 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 GOLGA6DP0CG33 693 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 JUPP14923 745 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 CTPS1P17812 591 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 KELP23276 732 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 ACP1P24666 158 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 NR2C2P49116 596 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 ACADVLP49748 655 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 E2F1Q01094 437 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 C1orf61Q13536 156 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 ELOCQ15369 112 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 CNGA3Q16281 694 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 PROX2Q3B8N5 592 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 TFDP3Q5H9I0 405 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 ALG1LQ6GMV1 187 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 C11orf63Q6NUN7 778 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 ZCCHC8Q6NZY4 707 aaKnown RBP11.23□□□□□ -0.61
RFFL-204ENST00000414419 NPNTQ6UXI9 565 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 CCNI2Q6ZMN8 369 aaPredicted RBP11.23□□□□□ -0.61
RFFL-204ENST00000414419 KIAA1328Q86T90 577 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 TMPRSS12Q86WS5 348 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 HID1Q8IV36 788 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 RCOR2Q8IZ40 523 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 RBFAQ8N0V3 343 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 TXLNBQ8N3L3 684 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 SPC24Q8NBT2 197 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 PIH1D2Q8WWB5 315 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 SCG3Q8WXD2 468 aaKnown RBP11.23□□□□□ -0.61
RFFL-204ENST00000414419 GATA6Q92908 595 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 NUS1Q96E22 293 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 RBM41Q96IZ5 413 aaKnown RBP11.23□□□□□ -0.61
RFFL-204ENST00000414419 APOLD1Q96LR9 279 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 TBATAQ96M53 351 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 WDR92Q96MX6 357 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 GOLPH3Q9H4A6 298 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 GOLGA6AQ9NYA3 693 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 NCKIPSDQ9NZQ3 722 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 SEPT10Q9P0V9 454 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 IMPACTQ9P2X3 320 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 KLQ9UEF7 1012 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 KLF15Q9UIH9 416 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 DNPEPQ9ULA0 475 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 CHKBQ9Y259 395 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 LRP4O75096 1905 aa11.23□□□□□ -0.61
RFFL-204ENST00000414419 NPIPB15A6NHN6 443 aaPredicted RBP11.22□□□□□ -0.61
RFFL-204ENST00000414419 TPP1O14773 563 aa11.22□□□□□ -0.61
RFFL-204ENST00000414419 TNFP01375 233 aa11.22□□□□□ -0.61
RFFL-204ENST00000414419 PDHA1P08559 390 aa11.22□□□□□ -0.61
RFFL-204ENST00000414419 ALPIP09923 528 aa11.22□□□□□ -0.61
RFFL-204ENST00000414419 ZNF30P17039 623 aa11.22□□□□□ -0.61
RFFL-204ENST00000414419 TGM2P21980 687 aa11.22□□□□□ -0.61
RFFL-204ENST00000414419 FECHP22830 423 aa11.22□□□□□ -0.61
RFFL-204ENST00000414419 CD86P42081 329 aa11.22□□□□□ -0.61
RFFL-204ENST00000414419 CDKN2BP42772 138 aa11.22□□□□□ -0.61
RFFL-204ENST00000414419 RPIAP49247 311 aa11.22□□□□□ -0.61
RFFL-204ENST00000414419 HK3P52790 923 aa11.22□□□□□ -0.61
RFFL-204ENST00000414419 SRP54P61011 504 aaKnown RBP11.22□□□□□ -0.61
RFFL-204ENST00000414419 RPL26P61254 145 aaKnown RBP11.22□□□□□ -0.61
RFFL-204ENST00000414419 IFI35P80217 286 aaPredicted RBP11.22□□□□□ -0.61
RFFL-204ENST00000414419 LLGL1Q15334 1064 aa11.22□□□□□ -0.61
RFFL-204ENST00000414419 SMAD1Q15797 465 aaKnown RBP11.22□□□□□ -0.61
RFFL-204ENST00000414419 DEFB133Q30KQ1 61 aa11.22□□□□□ -0.61
RFFL-204ENST00000414419 CCDC181Q5TID7 509 aa11.22□□□□□ -0.61
RFFL-204ENST00000414419 ESRP1Q6NXG1 681 aaKnown RBP11.22□□□□□ -0.61
RFFL-204ENST00000414419 PNCKQ6P2M8 343 aa11.22□□□□□ -0.61
RFFL-204ENST00000414419 SPOCD1Q6ZMY3 1216 aa11.22□□□□□ -0.61
RFFL-204ENST00000414419 GKN2Q86XP6 184 aa11.22□□□□□ -0.61
RFFL-204ENST00000414419 KATNAL2Q8IYT4 538 aa11.22□□□□□ -0.61
RFFL-204ENST00000414419 FSTL5Q8N475 847 aaPredicted RBP11.22□□□□□ -0.61
RFFL-204ENST00000414419 FAM181AQ8N9Y4 354 aa11.22□□□□□ -0.61
RFFL-204ENST00000414419 PLA2G15Q8NCC3 412 aa11.22□□□□□ -0.61
RFFL-204ENST00000414419 ARRDC2Q8TBH0 407 aa11.22□□□□□ -0.61
RFFL-204ENST00000414419 P3H4Q92791 437 aa11.22□□□□□ -0.61
RFFL-204ENST00000414419 TSACCQ96A04 125 aaPredicted RBP11.22□□□□□ -0.61
RFFL-204ENST00000414419 COQ10AQ96MF6 247 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms