RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 GALCP54803 685 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 STXBP1P61764 594 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 MBTD1Q05BQ5 628 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 HNRNPDQ14103 355 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 PLEKHM3Q6ZWE6 761 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 ZADH2Q8N4Q0 377 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 CENPTQ96BT3 561 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 PCED1BQ96HM7 432 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 ART5Q96L15 291 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 ZC4H2Q9NQZ6 224 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 KCNK1O00180 336 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 FCHO1O14526 889 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 TCHHL1Q5QJ38 904 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 DCAF12Q5T6F0 453 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 BTN2A1Q7KYR7 527 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 DPP10Q8N608 796 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 CAPS2Q9BXY5 557 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 PBX4Q9BYU1 374 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 GANQ9H2C0 597 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 NMUR1Q9HB89 426 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 NPHS2Q9NP85 383 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 SERINC1Q9NRX5 453 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 ADPRHL2Q9NX46 363 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 MEN1O00255 615 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 GNA12Q03113 381 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 MTM1Q13496 603 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 RNF19BQ6ZMZ0 732 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 RBFAQ8N0V3 343 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 VAT1Q99536 393 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 FRMD8P1Q9BZ68 369 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 SLC6A14Q9UN76 642 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 DUSP12Q9UNI6 340 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 PCDHGA6Q9Y5G7 932 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 TLX3O43711 291 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 H2AFXP16104 143 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 PBX2P40425 430 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 TOB1P50616 345 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 LILRA4P59901 499 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 ITGB3BPQ13352 177 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 CNGA2Q16280 664 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 ATXN7L2Q5T6C5 722 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 TRIM40Q6P9F5 258 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 CIR1Q86X95 450 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 FBXL6Q8N531 539 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 C12orf29Q8N999 325 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 SERPINB12Q96P63 405 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 HIST1H2AAQ96QV6 131 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 CCT7Q99832 543 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 THUMPD3Q9BV44 507 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 RAI2Q9Y5P3 530 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 DNMT3AQ9Y6K1 912 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 CHUKO15111 745 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 CCL11P51671 97 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 SLC7A2P52569 658 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 ILF2Q12905 390 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 FLOT2Q14254 428 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 C15orf59Q2T9L4 293 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 LDLRAP1Q5SW96 308 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 SCIMPQ6UWF3 145 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 HMCESQ96FZ2 354 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 TUBB6Q9BUF5 446 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 KCNK13Q9HB14 408 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 B3GAT2Q9NPZ5 323 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 OGFRQ9NZT2 677 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 MAN2B2Q9Y2E5 1009 aa9.22□□□□□ -0.93
LIMCH1-202ENST00000381753 DEPDC5O75140 1603 aa9.21□□□□□ -0.93
LIMCH1-202ENST00000381753 TFECO14948 347 aaPredicted RBP9.21□□□□□ -0.93
LIMCH1-202ENST00000381753 CCNB1P14635 433 aa9.21□□□□□ -0.93
LIMCH1-202ENST00000381753 ATP5A1P25705 553 aaKnown RBP9.21□□□□□ -0.93
LIMCH1-202ENST00000381753 HCAR3P49019 387 aa9.21□□□□□ -0.93
LIMCH1-202ENST00000381753 NUDT2P50583 147 aa9.21□□□□□ -0.93
LIMCH1-202ENST00000381753 AP1S1P61966 158 aa9.21□□□□□ -0.93
LIMCH1-202ENST00000381753 FAM183BPQ6ZVS7 135 aa9.21□□□□□ -0.93
LIMCH1-202ENST00000381753 Q6ZVU0 165 aa9.21□□□□□ -0.93
LIMCH1-202ENST00000381753 BEND5Q7L4P6 421 aa9.21□□□□□ -0.93
LIMCH1-202ENST00000381753 IRGQQ8WZA9 623 aa9.21□□□□□ -0.93
LIMCH1-202ENST00000381753 RBM15Q96T37 977 aaKnown RBP eCLIP9.21□□□□□ -0.93
LIMCH1-202ENST00000381753 TACO1Q9BSH4 297 aaKnown RBP9.21□□□□□ -0.93
LIMCH1-202ENST00000381753 YIPF4Q9BSR8 244 aa9.21□□□□□ -0.93
LIMCH1-202ENST00000381753 CARD9Q9H257 536 aa9.21□□□□□ -0.93
LIMCH1-202ENST00000381753 DNAJB4Q9UDY4 337 aa9.21□□□□□ -0.93
LIMCH1-202ENST00000381753 CAPN11Q9UMQ6 739 aa9.21□□□□□ -0.93
LIMCH1-202ENST00000381753 SLC9A8Q9Y2E8 581 aa9.21□□□□□ -0.93
LIMCH1-202ENST00000381753 TPBGLP0DKB5 382 aa9.21□□□□□ -0.93
LIMCH1-202ENST00000381753 CD151P48509 253 aa9.21□□□□□ -0.93
LIMCH1-202ENST00000381753 POLD2P49005 469 aa9.21□□□□□ -0.93
LIMCH1-202ENST00000381753 NR6A1Q15406 480 aa9.21□□□□□ -0.93
LIMCH1-202ENST00000381753 DEFB133Q30KQ1 61 aa9.21□□□□□ -0.93
LIMCH1-202ENST00000381753 ABHD13Q7L211 337 aa9.21□□□□□ -0.93
LIMCH1-202ENST00000381753 SYT12Q8IV01 421 aa9.21□□□□□ -0.93
LIMCH1-202ENST00000381753 OR5M3Q8NGP4 307 aa9.21□□□□□ -0.93
LIMCH1-202ENST00000381753 OR2T3Q8NH03 318 aa9.21□□□□□ -0.93
LIMCH1-202ENST00000381753 RDH11Q8TC12 318 aa9.21□□□□□ -0.93
LIMCH1-202ENST00000381753 FGF13Q92913 245 aa9.21□□□□□ -0.93
LIMCH1-202ENST00000381753 REXO4Q9GZR2 422 aaKnown RBP9.21□□□□□ -0.93
LIMCH1-202ENST00000381753 RAPGEFL1Q9UHV5 662 aa9.21□□□□□ -0.93
LIMCH1-202ENST00000381753 MAFBQ9Y5Q3 323 aaPredicted RBP9.21□□□□□ -0.93
LIMCH1-202ENST00000381753 CCT8L1PA6NM43 557 aa9.21□□□□□ -0.94
LIMCH1-202ENST00000381753 MC4RP32245 332 aa9.21□□□□□ -0.94
LIMCH1-202ENST00000381753 RPL4P36578 427 aaKnown RBP9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms