RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 ADGRE3Q9BY15 652 aa25.89■■□□□ 1.74
TRIM28-204ENST00000594806 PCDH9Q9HC56 1237 aa25.89■■□□□ 1.74
TRIM28-204ENST00000594806 TRMT1Q9NXH9 659 aaKnown RBP25.89■■□□□ 1.74
TRIM28-204ENST00000594806 ANKRD6Q9Y2G4 727 aa25.89■■□□□ 1.74
TRIM28-204ENST00000594806 LOC105378220A0A1B0GUY1 285 aaPredicted RBP25.88■■□□□ 1.73
TRIM28-204ENST00000594806 A0A1B0GVT2 93 aa25.88■■□□□ 1.73
TRIM28-204ENST00000594806 DFNA5O60443 496 aa25.88■■□□□ 1.73
TRIM28-204ENST00000594806 CER1O95813 267 aa25.88■■□□□ 1.73
TRIM28-204ENST00000594806 VIPR1P32241 457 aa25.88■■□□□ 1.73
TRIM28-204ENST00000594806 LIG3P49916 1009 aa25.88■■□□□ 1.73
TRIM28-204ENST00000594806 RALGDSQ12967 914 aa25.88■■□□□ 1.73
TRIM28-204ENST00000594806 IHHQ14623 411 aa25.88■■□□□ 1.73
TRIM28-204ENST00000594806 ITPRIPL1Q6GPH6 555 aa25.88■■□□□ 1.73
TRIM28-204ENST00000594806 LIPIQ6XZB0 460 aa25.88■■□□□ 1.73
TRIM28-204ENST00000594806 ZNF567Q8N184 647 aa25.88■■□□□ 1.73
TRIM28-204ENST00000594806 FCRL5Q96RD9 977 aa25.88■■□□□ 1.73
TRIM28-204ENST00000594806 CHKBQ9Y259 395 aa25.88■■□□□ 1.73
TRIM28-204ENST00000594806 FRYLO94915 3013 aa25.88■■□□□ 1.73
TRIM28-204ENST00000594806 TLR4O00206 839 aa25.87■■□□□ 1.73
TRIM28-204ENST00000594806 TOR1BO14657 336 aa25.87■■□□□ 1.73
TRIM28-204ENST00000594806 FPGTO14772 594 aa25.87■■□□□ 1.73
TRIM28-204ENST00000594806 PRLP01236 227 aa25.87■■□□□ 1.73
TRIM28-204ENST00000594806 PDHA1P08559 390 aa25.87■■□□□ 1.73
TRIM28-204ENST00000594806 ELFN1P0C7U0 828 aa25.87■■□□□ 1.73
TRIM28-204ENST00000594806 CD68P34810 354 aaPredicted RBP25.87■■□□□ 1.73
TRIM28-204ENST00000594806 ZNF569Q5MCW4 686 aa25.87■■□□□ 1.73
TRIM28-204ENST00000594806 STPG1Q5TH74 334 aa25.87■■□□□ 1.73
TRIM28-204ENST00000594806 ABI3BPQ7Z7G0 1075 aa25.87■■□□□ 1.73
TRIM28-204ENST00000594806 DCP2Q8IU60 420 aaKnown RBP25.87■■□□□ 1.73
TRIM28-204ENST00000594806 SLC35B2Q8TB61 432 aa25.87■■□□□ 1.73
TRIM28-204ENST00000594806 KLHDC7BQ96G42 594 aa25.87■■□□□ 1.73
TRIM28-204ENST00000594806 PPP1R2P1Q96PQ5 205 aa25.87■■□□□ 1.73
TRIM28-204ENST00000594806 RBM15Q96T37 977 aaKnown RBP eCLIP25.87■■□□□ 1.737e-9■■□□□ 11.9
TRIM28-204ENST00000594806 KLF6Q99612 283 aaPredicted RBP25.87■■□□□ 1.73
TRIM28-204ENST00000594806 USP29Q9HBJ7 922 aa25.87■■□□□ 1.73
TRIM28-204ENST00000594806 RXFP3Q9NSD7 469 aa25.87■■□□□ 1.73
TRIM28-204ENST00000594806 B4GALT6Q9UBX8 382 aa25.87■■□□□ 1.73
TRIM28-204ENST00000594806 FAM153AQ9UHL3 310 aa25.87■■□□□ 1.73
TRIM28-204ENST00000594806 ZKSCAN5Q9Y2L8 839 aa25.87■■□□□ 1.73
TRIM28-204ENST00000594806 A0A0J9YYE9 177 aa25.86■■□□□ 1.73
TRIM28-204ENST00000594806 PSMD11O00231 422 aa25.86■■□□□ 1.73
TRIM28-204ENST00000594806 CDX4O14627 284 aaPredicted RBP25.86■■□□□ 1.73
TRIM28-204ENST00000594806 WNT9AO14904 365 aa25.86■■□□□ 1.73
TRIM28-204ENST00000594806 KCNN4O15554 427 aa25.86■■□□□ 1.73
TRIM28-204ENST00000594806 LZTS3O60299 673 aaPredicted RBP25.86■■□□□ 1.73
TRIM28-204ENST00000594806 GDF9O60383 454 aa25.86■■□□□ 1.73
TRIM28-204ENST00000594806 TRBC1P01850 177 aa25.86■■□□□ 1.73
TRIM28-204ENST00000594806 WNT1P04628 370 aa25.86■■□□□ 1.73
TRIM28-204ENST00000594806 PRKCGP05129 697 aa25.86■■□□□ 1.73
TRIM28-204ENST00000594806 C6P13671 934 aa25.86■■□□□ 1.73
TRIM28-204ENST00000594806 CTSKP43235 329 aa25.86■■□□□ 1.73
TRIM28-204ENST00000594806 BNC1Q01954 994 aa25.86■■□□□ 1.73
TRIM28-204ENST00000594806 ARHGEF7Q14155 803 aa25.86■■□□□ 1.73
TRIM28-204ENST00000594806 KIF19Q2TAC6 998 aa25.86■■□□□ 1.73
TRIM28-204ENST00000594806 RAVER1Q8IY67 606 aaKnown RBP25.86■■□□□ 1.73
TRIM28-204ENST00000594806 CENPTQ96BT3 561 aa25.86■■□□□ 1.73
TRIM28-204ENST00000594806 PBKQ96KB5 322 aa25.86■■□□□ 1.73
TRIM28-204ENST00000594806 GTPBP2Q9BX10 602 aaKnown RBP25.86■■□□□ 1.73
TRIM28-204ENST00000594806 ERVMER34-1Q9H9K5 563 aa25.86■■□□□ 1.73
TRIM28-204ENST00000594806 DNAAF2Q9NVR5 837 aaKnown RBP25.86■■□□□ 1.73
TRIM28-204ENST00000594806 CDV3Q9UKY7 258 aaKnown RBP25.86■■□□□ 1.73
TRIM28-204ENST00000594806 WDR87Q6ZQQ6 2873 aa25.86■■□□□ 1.73
TRIM28-204ENST00000594806 TCRBV7S2A1N4TA0A589 114 aa25.85■■□□□ 1.73
TRIM28-204ENST00000594806 A6NNZ2 444 aa25.85■■□□□ 1.73
TRIM28-204ENST00000594806 ANKRD66B4E2M5 251 aa25.85■■□□□ 1.73
TRIM28-204ENST00000594806 OPHN1O60890 802 aa25.85■■□□□ 1.73
TRIM28-204ENST00000594806 EPOP01588 193 aa25.85■■□□□ 1.73
TRIM28-204ENST00000594806 ZNF883P0CG24 379 aa25.85■■□□□ 1.73
TRIM28-204ENST00000594806 ZNF30P17039 623 aa25.85■■□□□ 1.73
TRIM28-204ENST00000594806 NFKB1P19838 968 aa25.85■■□□□ 1.73
TRIM28-204ENST00000594806 STIP1P31948 543 aaKnown RBP25.85■■□□□ 1.73
TRIM28-204ENST00000594806 CDK18Q07002 472 aa25.85■■□□□ 1.73
TRIM28-204ENST00000594806 CCDC70Q6NSX1 233 aa25.85■■□□□ 1.73
TRIM28-204ENST00000594806 KYAT3Q6YP21 454 aaKnown RBP25.85■■□□□ 1.73
TRIM28-204ENST00000594806 OXR1Q8N573 874 aa25.85■■□□□ 1.73
TRIM28-204ENST00000594806 MINDY1Q8N5J2 469 aa25.85■■□□□ 1.73
TRIM28-204ENST00000594806 SPATA13Q96N96 652 aa25.85■■□□□ 1.73
TRIM28-204ENST00000594806 LYSMD1Q96S90 227 aa25.85■■□□□ 1.73
TRIM28-204ENST00000594806 SRPK1Q96SB4 655 aaKnown RBP25.85■■□□□ 1.73
TRIM28-204ENST00000594806 FAM118BQ9BPY3 351 aa25.85■■□□□ 1.73
TRIM28-204ENST00000594806 GDF3Q9NR23 364 aa25.85■■□□□ 1.73
TRIM28-204ENST00000594806 RSPH14Q9UHP6 348 aa25.85■■□□□ 1.73
TRIM28-204ENST00000594806 TP53BP1Q12888 1972 aaPredicted RBP25.85■■□□□ 1.73
TRIM28-204ENST00000594806 C5orf60A6NFR6 353 aa25.84■■□□□ 1.73
TRIM28-204ENST00000594806 SLC30A4O14863 429 aa25.84■■□□□ 1.73
TRIM28-204ENST00000594806 ANXA9O76027 345 aa25.84■■□□□ 1.73
TRIM28-204ENST00000594806 HEXIM1O94992 359 aaKnown RBP25.84■■□□□ 1.73
TRIM28-204ENST00000594806 TNNT3P45378 269 aaPredicted RBP25.84■■□□□ 1.73
TRIM28-204ENST00000594806 RABIFP47224 123 aa25.84■■□□□ 1.73
TRIM28-204ENST00000594806 NXPH1P58417 271 aa25.84■■□□□ 1.73
TRIM28-204ENST00000594806 SLC14A1Q13336 389 aa25.84■■□□□ 1.73
TRIM28-204ENST00000594806 MPP3Q13368 585 aa25.84■■□□□ 1.73
TRIM28-204ENST00000594806 LRRC14Q15048 493 aa25.84■■□□□ 1.73
TRIM28-204ENST00000594806 HLA-BQ31612 363 aa25.84■■□□□ 1.73
TRIM28-204ENST00000594806 ANKRD20A2Q5SQ80 823 aa25.84■■□□□ 1.73
TRIM28-204ENST00000594806 ANKRD20A1Q5TYW2 823 aa25.84■■□□□ 1.73
TRIM28-204ENST00000594806 ANKRD20A3Q5VUR7 823 aa25.84■■□□□ 1.73
TRIM28-204ENST00000594806 GCNT7Q6ZNI0 430 aa25.84■■□□□ 1.73
TRIM28-204ENST00000594806 IFT43Q96FT9 208 aa25.84■■□□□ 1.73
TRIM28-204ENST00000594806 BMFQ96LC9 184 aa25.84■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms