RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 KLHL24Q6TFL4 600 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 KDELC1Q6UW63 502 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 NCCRP1Q6ZVX7 275 aaPredicted RBP4.66□□□□□ -1.66
SF3B1-202ENST00000409915 TAS1R1Q7RTX1 841 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 RBM23Q86U06 439 aaKnown RBP4.66□□□□□ -1.66
SF3B1-202ENST00000409915 CD163Q86VB7 1156 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 CBWD2Q8IUF1 395 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 PHYKPLQ8IUZ5 450 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 CCDC13Q8IYE1 715 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 ADSSL1Q8N142 457 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 VPS52Q8N1B4 723 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 DTWD2Q8NBA8 298 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 SLC17A8Q8NDX2 589 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 Q8NFD4 153 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 IPMKQ8NFU5 416 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 OR1N1Q8NGS0 311 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 ZNF417Q8TAU3 575 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 TEKT4Q8WW24 435 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 ZNF606Q8WXB4 792 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 POMGNT1Q8WZA1 660 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 P2RX5Q93086 422 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 NMD3Q96D46 503 aaKnown RBP4.66□□□□□ -1.66
SF3B1-202ENST00000409915 MRPL38Q96DV4 380 aaKnown RBP4.66□□□□□ -1.66
SF3B1-202ENST00000409915 NAF1Q96HR8 494 aaKnown RBP4.66□□□□□ -1.66
SF3B1-202ENST00000409915 IGSF21Q96ID5 467 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 UROC1Q96N76 676 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 FCRL3Q96P31 734 aaPredicted RBP4.66□□□□□ -1.66
SF3B1-202ENST00000409915 FANCD2OSQ96PS1 177 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 TMEM237Q96Q45 408 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 PPP1R10Q96QC0 940 aaKnown RBP4.66□□□□□ -1.66
SF3B1-202ENST00000409915 ZNF587Q96SQ5 575 aaPredicted RBP4.66□□□□□ -1.66
SF3B1-202ENST00000409915 TCF25Q9BQ70 676 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 FAM213AQ9BRX8 229 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 CCDC28BQ9BUN5 200 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 NUP58Q9BVL2 599 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 CARD6Q9BX69 1037 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 DNAI2Q9GZS0 605 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 NAT10Q9H0A0 1025 aaKnown RBP4.66□□□□□ -1.66
SF3B1-202ENST00000409915 ZBP1Q9H171 429 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 CDIP1Q9H305 208 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 PABPC3Q9H361 631 aaKnown RBP4.66□□□□□ -1.66
SF3B1-202ENST00000409915 ANKZF1Q9H8Y5 726 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 ERVMER34-1Q9H9K5 563 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 SARS2Q9NP81 518 aaKnown RBP4.66□□□□□ -1.66
SF3B1-202ENST00000409915 ENTPD7Q9NQZ7 604 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 TLR9Q9NR96 1032 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 AGPAT3Q9NRZ7 376 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 PCMTD2Q9NV79 361 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 INTS10Q9NVR2 710 aaKnown RBP4.66□□□□□ -1.66
SF3B1-202ENST00000409915 TBCCD1Q9NVR7 557 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 ADPRHL2Q9NX46 363 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 CLDND1Q9NY35 253 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 CRIM1Q9NZV1 1036 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 HESX1Q9UBX0 185 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 CPSF3Q9UKF6 684 aaKnown RBP4.66□□□□□ -1.66
SF3B1-202ENST00000409915 AGO2Q9UKV8 859 aaKnown RBP4.66□□□□□ -1.66
SF3B1-202ENST00000409915 SMG5Q9UPR3 1016 aaKnown RBP4.66□□□□□ -1.66
SF3B1-202ENST00000409915 EXOC7Q9UPT5 735 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 SSX2IPQ9Y2D8 614 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 DTNAQ9Y4J8 743 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 HS3ST4Q9Y661 456 aa4.66□□□□□ -1.66
SF3B1-202ENST00000409915 VCANP13611 3396 aa4.65□□□□□ -1.66
SF3B1-202ENST00000409915 LOC100289279A0A1B0GTE1 492 aa4.65□□□□□ -1.67
SF3B1-202ENST00000409915 PVALEFA0A1B0GWK0 134 aa4.65□□□□□ -1.67
SF3B1-202ENST00000409915 TTC26A0AVF1 554 aa4.65□□□□□ -1.67
SF3B1-202ENST00000409915 ADARB2-AS1A8MUL3 147 aa4.65□□□□□ -1.67
SF3B1-202ENST00000409915 H3BQ06 376 aaPredicted RBP4.65□□□□□ -1.67
SF3B1-202ENST00000409915 TAF4O00268 1085 aa4.65□□□□□ -1.67
SF3B1-202ENST00000409915 PSMA7O14818 248 aa4.65□□□□□ -1.67
SF3B1-202ENST00000409915 EIF3DO15371 548 aaKnown RBP eCLIP4.65□□□□□ -1.67
SF3B1-202ENST00000409915 N4BP1O75113 896 aaKnown RBP4.65□□□□□ -1.67
SF3B1-202ENST00000409915 SOCS5O75159 536 aa4.65□□□□□ -1.67
SF3B1-202ENST00000409915 SNRNP70P08621 437 aaKnown RBP4.65□□□□□ -1.67
SF3B1-202ENST00000409915 LAMP2P13473 410 aa4.65□□□□□ -1.67
SF3B1-202ENST00000409915 KCNE1P15382 129 aa4.65□□□□□ -1.67
SF3B1-202ENST00000409915 RPS2P15880 293 aaKnown RBP4.65□□□□□ -1.67
SF3B1-202ENST00000409915 MAPK3P27361 379 aaPredicted RBP4.65□□□□□ -1.67
SF3B1-202ENST00000409915 GABRB3P28472 473 aa4.65□□□□□ -1.67
SF3B1-202ENST00000409915 TKTP29401 623 aaKnown RBP4.65□□□□□ -1.67
SF3B1-202ENST00000409915 TLX1P31314 330 aaPredicted RBP4.65□□□□□ -1.67
SF3B1-202ENST00000409915 EIF2DP41214 584 aaKnown RBP4.65□□□□□ -1.67
SF3B1-202ENST00000409915 CTSKP43235 329 aa4.65□□□□□ -1.67
SF3B1-202ENST00000409915 BRCC3P46736 316 aa4.65□□□□□ -1.67
SF3B1-202ENST00000409915 NRIP1P48552 1158 aa4.65□□□□□ -1.67
SF3B1-202ENST00000409915 FNTBP49356 437 aa4.65□□□□□ -1.67
SF3B1-202ENST00000409915 ZNF41P51814 821 aaPredicted RBP4.65□□□□□ -1.67
SF3B1-202ENST00000409915 RAD23AP54725 363 aa4.65□□□□□ -1.67
SF3B1-202ENST00000409915 ARPC4P59998 168 aa4.65□□□□□ -1.67
SF3B1-202ENST00000409915 AP2B1P63010 937 aa4.65□□□□□ -1.67
SF3B1-202ENST00000409915 KHDRBS1Q07666 443 aaKnown RBP eCLIP4.65□□□□□ -1.67
SF3B1-202ENST00000409915 DLX2Q07687 328 aaPredicted RBP4.65□□□□□ -1.67
SF3B1-202ENST00000409915 HYAL1Q12794 435 aa4.65□□□□□ -1.67
SF3B1-202ENST00000409915 CBX3Q13185 183 aa4.65□□□□□ -1.67
SF3B1-202ENST00000409915 ALCAMQ13740 583 aa4.65□□□□□ -1.67
SF3B1-202ENST00000409915 DOC2BQ14184 412 aa4.65□□□□□ -1.67
SF3B1-202ENST00000409915 SPCS2Q15005 226 aa4.65□□□□□ -1.67
SF3B1-202ENST00000409915 GPR68Q15743 365 aa4.65□□□□□ -1.67
SF3B1-202ENST00000409915 KYNUQ16719 465 aa4.65□□□□□ -1.67
SF3B1-202ENST00000409915 BMT2Q1RMZ1 405 aa4.65□□□□□ -1.67
SF3B1-202ENST00000409915 CCDC14Q49A88 953 aa4.65□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms