RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 OR51B4Q9Y5P0 310 aa22.81■■□□□ 1.24
CDX1-201ENST00000231656 CCDC78A2IDD5 438 aa22.8■■□□□ 1.24
CDX1-201ENST00000231656 NEDD8-MDP1E9PL57 170 aa22.8■■□□□ 1.24
CDX1-201ENST00000231656 F7P08709 466 aaPredicted RBP22.8■■□□□ 1.24
CDX1-201ENST00000231656 GLDCP23378 1020 aa22.8■■□□□ 1.24
CDX1-201ENST00000231656 ITKQ08881 620 aa22.8■■□□□ 1.24
CDX1-201ENST00000231656 LBRQ14739 615 aaKnown RBP22.8■■□□□ 1.24
CDX1-201ENST00000231656 PCSK7Q16549 785 aa22.8■■□□□ 1.24
CDX1-201ENST00000231656 GALNTL6Q49A17 601 aa22.8■■□□□ 1.24
CDX1-201ENST00000231656 TMCO4Q5TGY1 634 aa22.8■■□□□ 1.24
CDX1-201ENST00000231656 ALG14Q96F25 216 aa22.8■■□□□ 1.24
CDX1-201ENST00000231656 ASIC4Q96FT7 647 aa22.8■■□□□ 1.24
CDX1-201ENST00000231656 MECRQ9BV79 373 aa22.8■■□□□ 1.24
CDX1-201ENST00000231656 ZFP14Q9HCL3 533 aa22.8■■□□□ 1.24
CDX1-201ENST00000231656 SNX15Q9NRS6 342 aa22.8■■□□□ 1.24
CDX1-201ENST00000231656 GGT7Q9UJ14 662 aa22.8■■□□□ 1.24
CDX1-201ENST00000231656 SLC12A4Q9UP95 1085 aa22.8■■□□□ 1.24
CDX1-201ENST00000231656 BIRC5O15392 142 aa22.79■■□□□ 1.24
CDX1-201ENST00000231656 BPGMP07738 259 aa22.79■■□□□ 1.24
CDX1-201ENST00000231656 GSTA1P08263 222 aa22.79■■□□□ 1.24
CDX1-201ENST00000231656 CSKP41240 450 aa22.79■■□□□ 1.24
CDX1-201ENST00000231656 ARCN1P48444 511 aaKnown RBP22.79■■□□□ 1.24
CDX1-201ENST00000231656 SERPINB8P50452 374 aa22.79■■□□□ 1.24
CDX1-201ENST00000231656 OXCT1P55809 520 aa22.79■■□□□ 1.24
CDX1-201ENST00000231656 EML3Q32P44 896 aa22.79■■□□□ 1.24
CDX1-201ENST00000231656 TRIM68Q6AZZ1 485 aa22.79■■□□□ 1.24
CDX1-201ENST00000231656 FSTL4Q6MZW2 842 aa22.79■■□□□ 1.24
CDX1-201ENST00000231656 ESRP1Q6NXG1 681 aaKnown RBP22.79■■□□□ 1.24
CDX1-201ENST00000231656 KDELC2Q7Z4H8 507 aa22.79■■□□□ 1.24
CDX1-201ENST00000231656 CNTN4Q8IWV2 1026 aa22.79■■□□□ 1.24
CDX1-201ENST00000231656 TRIM42Q8IWZ5 723 aa22.79■■□□□ 1.24
CDX1-201ENST00000231656 TREX1Q9NSU2 369 aa22.79■■□□□ 1.24
CDX1-201ENST00000231656 NSMCE4AQ9NXX6 385 aa22.79■■□□□ 1.24
CDX1-201ENST00000231656 MARK1Q9P0L2 795 aa22.79■■□□□ 1.24
CDX1-201ENST00000231656 DCDC2Q9UHG0 476 aa22.79■■□□□ 1.24
CDX1-201ENST00000231656 MTO1Q9Y2Z2 717 aaKnown RBP22.79■■□□□ 1.24
CDX1-201ENST00000231656 USH1CQ9Y6N9 552 aa22.79■■□□□ 1.24
CDX1-201ENST00000231656 KIF26AQ9ULI4 1882 aaPredicted RBP22.79■■□□□ 1.24
CDX1-201ENST00000231656 GOLGA8TH3BQL2 631 aa22.78■■□□□ 1.24
CDX1-201ENST00000231656 CBX4O00257 560 aa22.78■■□□□ 1.24
CDX1-201ENST00000231656 TIMM44O43615 452 aa22.78■■□□□ 1.24
CDX1-201ENST00000231656 UBOX5O94941 541 aa22.78■■□□□ 1.24
CDX1-201ENST00000231656 GSRP00390 522 aa22.78■■□□□ 1.24
CDX1-201ENST00000231656 NEFHP12036 1026 aa22.78■■□□□ 1.24
CDX1-201ENST00000231656 LAMP2P13473 410 aa22.78■■□□□ 1.24
CDX1-201ENST00000231656 TYRP14679 529 aa22.78■■□□□ 1.24
CDX1-201ENST00000231656 ARNTP27540 789 aa22.78■■□□□ 1.24
CDX1-201ENST00000231656 TYK2P29597 1187 aa22.78■■□□□ 1.24
CDX1-201ENST00000231656 LMAN2Q12907 356 aa22.78■■□□□ 1.24
CDX1-201ENST00000231656 INSCQ1MX18 579 aa22.78■■□□□ 1.24
CDX1-201ENST00000231656 PPM1JQ5JR12 505 aa22.78■■□□□ 1.24
CDX1-201ENST00000231656 FITM2Q8N6M3 262 aa22.78■■□□□ 1.24
CDX1-201ENST00000231656 ZNF599Q96NL3 588 aa22.78■■□□□ 1.24
CDX1-201ENST00000231656 KIAA1522Q9P206 1035 aaPredicted RBP22.78■■□□□ 1.24
CDX1-201ENST00000231656 VPS28Q9UK41 221 aa22.78■■□□□ 1.24
CDX1-201ENST00000231656 PRKCGP05129 697 aa22.78■■□□□ 1.24
CDX1-201ENST00000231656 MSLNQ13421 630 aaPredicted RBP22.78■■□□□ 1.24
CDX1-201ENST00000231656 DHCR24Q15392 516 aa22.78■■□□□ 1.24
CDX1-201ENST00000231656 DBN1Q16643 649 aa22.78■■□□□ 1.24
CDX1-201ENST00000231656 N4BP2L1Q5TBK1 243 aaPredicted RBP22.78■■□□□ 1.24
CDX1-201ENST00000231656 C16orf46Q6P387 395 aa22.78■■□□□ 1.24
CDX1-201ENST00000231656 VITQ6UXI7 678 aa22.78■■□□□ 1.24
CDX1-201ENST00000231656 CMC1Q7Z7K0 106 aa22.78■■□□□ 1.24
CDX1-201ENST00000231656 SLC25A41Q8N5S1 370 aa22.78■■□□□ 1.24
CDX1-201ENST00000231656 RAB3IL1Q8TBN0 382 aa22.78■■□□□ 1.24
CDX1-201ENST00000231656 ZNF398Q8TD17 642 aa22.78■■□□□ 1.24
CDX1-201ENST00000231656 ATP2A3Q93084 1043 aa22.78■■□□□ 1.24
CDX1-201ENST00000231656 E2F7Q96AV8 911 aa22.78■■□□□ 1.24
CDX1-201ENST00000231656 ZFYVE19Q96K21 471 aa22.78■■□□□ 1.24
CDX1-201ENST00000231656 NECTIN4Q96NY8 510 aa22.78■■□□□ 1.24
CDX1-201ENST00000231656 RANBP9Q96S59 729 aa22.78■■□□□ 1.24
CDX1-201ENST00000231656 NPHS2Q9NP85 383 aa22.78■■□□□ 1.24
CDX1-201ENST00000231656 SLC2A6Q9UGQ3 507 aa22.78■■□□□ 1.24
CDX1-201ENST00000231656 CD207Q9UJ71 328 aa22.78■■□□□ 1.24
CDX1-201ENST00000231656 TTC24A2A3L6 582 aaPredicted RBP22.77■■□□□ 1.24
CDX1-201ENST00000231656 MUSKO15146 869 aa22.77■■□□□ 1.24
CDX1-201ENST00000231656 PLIN3O60664 434 aa22.77■■□□□ 1.24
CDX1-201ENST00000231656 SIN3BO75182 1162 aa22.77■■□□□ 1.24
CDX1-201ENST00000231656 TROVE2P10155 538 aaKnown RBP eCLIP22.77■■□□□ 1.24
CDX1-201ENST00000231656 CD70P32970 193 aa22.77■■□□□ 1.24
CDX1-201ENST00000231656 ABCG1P45844 678 aa22.77■■□□□ 1.24
CDX1-201ENST00000231656 CCDC15Q0P6D6 951 aa22.77■■□□□ 1.24
CDX1-201ENST00000231656 CES4AQ5XG92 561 aa22.77■■□□□ 1.24
CDX1-201ENST00000231656 NUDCD3Q8IVD9 361 aa22.77■■□□□ 1.24
CDX1-201ENST00000231656 SUSD6Q92537 303 aa22.77■■□□□ 1.24
CDX1-201ENST00000231656 ATXN7L3BQ96GX2 97 aa22.77■■□□□ 1.24
CDX1-201ENST00000231656 VPS39Q96JC1 886 aa22.77■■□□□ 1.24
CDX1-201ENST00000231656 ACTL7AQ9Y615 435 aa22.77■■□□□ 1.24
CDX1-201ENST00000231656 CAPN7Q9Y6W3 813 aa22.77■■□□□ 1.24
CDX1-201ENST00000231656 H3BQ06 376 aaPredicted RBP22.76■■□□□ 1.23
CDX1-201ENST00000231656 SNAP91O60641 907 aa22.76■■□□□ 1.23
CDX1-201ENST00000231656 ZMPSTE24O75844 475 aa22.76■■□□□ 1.23
CDX1-201ENST00000231656 TGDSO95455 350 aa22.76■■□□□ 1.23
CDX1-201ENST00000231656 CYP17A1P05093 508 aa22.76■■□□□ 1.23
CDX1-201ENST00000231656 HLA-FP30511 346 aa22.76■■□□□ 1.23
CDX1-201ENST00000231656 SERPINH1P50454 418 aaKnown RBP22.76■■□□□ 1.23
CDX1-201ENST00000231656 ARF5P84085 180 aa22.76■■□□□ 1.23
CDX1-201ENST00000231656 OVGP1Q12889 678 aa22.76■■□□□ 1.23
CDX1-201ENST00000231656 KIAA0930Q6ICG6 404 aaPredicted RBP22.76■■□□□ 1.23
CDX1-201ENST00000231656 APCDD1Q8J025 514 aa22.76■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms