RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 TMCO5BA8MYB1 307 aa7.04□□□□□ -1.28
SCN1A-212ENST00000636194 FGFR1OPO95684 399 aaKnown RBP7.04□□□□□ -1.28
SCN1A-212ENST00000636194 SNX16P57768 344 aa7.04□□□□□ -1.28
SCN1A-212ENST00000636194 CETN1Q12798 172 aa7.04□□□□□ -1.28
SCN1A-212ENST00000636194 ANKRD45Q5TZF3 282 aa7.04□□□□□ -1.28
SCN1A-212ENST00000636194 LTV1Q96GA3 475 aaPredicted RBP7.04□□□□□ -1.28
SCN1A-212ENST00000636194 FEZ2Q9UHY8 353 aaPredicted RBP7.04□□□□□ -1.28
SCN1A-212ENST00000636194 PRDM2Q13029 1718 aa7.04□□□□□ -1.28
SCN1A-212ENST00000636194 CDKL5O76039 1030 aa7.04□□□□□ -1.28
SCN1A-212ENST00000636194 GOLGA3Q08378 1498 aa7.04□□□□□ -1.28
SCN1A-212ENST00000636194 BRPF1P55201 1214 aaPredicted RBP7.04□□□□□ -1.28
SCN1A-212ENST00000636194 SMG6Q86US8 1419 aaKnown RBP7.03□□□□□ -1.28
SCN1A-212ENST00000636194 SPECC1LQ69YQ0 1117 aa7.03□□□□□ -1.28
SCN1A-212ENST00000636194 ZHX3Q9H4I2 956 aa7.03□□□□□ -1.28
SCN1A-212ENST00000636194 UBE4AQ14139 1066 aa7.03□□□□□ -1.28
SCN1A-212ENST00000636194 WASHC4Q2M389 1173 aa7.03□□□□□ -1.28
SCN1A-212ENST00000636194 CCDC148Q8NFR7 591 aa7.03□□□□□ -1.28
SCN1A-212ENST00000636194 GBP3Q9H0R5 595 aa7.03□□□□□ -1.28
SCN1A-212ENST00000636194 ARL1P40616 181 aaPredicted RBP7.03□□□□□ -1.28
SCN1A-212ENST00000636194 CFAP58Q5T655 872 aa7.03□□□□□ -1.28
SCN1A-212ENST00000636194 CCDC174Q6PII3 467 aa7.03□□□□□ -1.28
SCN1A-212ENST00000636194 COG3Q96JB2 828 aa7.03□□□□□ -1.28
SCN1A-212ENST00000636194 RSPH3Q86UC2 560 aa7.03□□□□□ -1.28
SCN1A-212ENST00000636194 TMOD2Q9NZR1 351 aa7.03□□□□□ -1.28
SCN1A-212ENST00000636194 ACTN2P35609 894 aa7.03□□□□□ -1.28
SCN1A-212ENST00000636194 PPFIBP2Q8ND30 876 aa7.03□□□□□ -1.28
SCN1A-212ENST00000636194 EHMT1Q9H9B1 1298 aa7.03□□□□□ -1.28
SCN1A-212ENST00000636194 TMCO3Q6UWJ1 677 aa7.03□□□□□ -1.28
SCN1A-212ENST00000636194 CRACR2AQ9BSW2 395 aa7.03□□□□□ -1.28
SCN1A-212ENST00000636194 KIAA1328Q86T90 577 aa7.02□□□□□ -1.28
SCN1A-212ENST00000636194 PPP1R14CQ8TAE6 165 aa7.02□□□□□ -1.28
SCN1A-212ENST00000636194 NOL7Q9UMY1 257 aaKnown RBP7.02□□□□□ -1.28
SCN1A-212ENST00000636194 MAP7D1Q3KQU3 841 aa7.02□□□□□ -1.29
SCN1A-212ENST00000636194 WDR66Q8TBY9 1149 aa7.02□□□□□ -1.29
SCN1A-212ENST00000636194 PDIA4P13667 645 aaKnown RBP7.02□□□□□ -1.29
SCN1A-212ENST00000636194 RFX1P22670 979 aa7.02□□□□□ -1.29
SCN1A-212ENST00000636194 LARP1Q6PKG0 1096 aaKnown RBP7.02□□□□□ -1.29
SCN1A-212ENST00000636194 RBM5P52756 815 aaKnown RBP eCLIP7.02□□□□□ -1.29
SCN1A-212ENST00000636194 SMC1BQ8NDV3 1235 aa7.02□□□□□ -1.29
SCN1A-212ENST00000636194 SETD1BQ9UPS6 1966 aaKnown RBP7.02□□□□□ -1.29
SCN1A-212ENST00000636194 CCDC160A6NGH7 325 aa7.02□□□□□ -1.29
SCN1A-212ENST00000636194 MIPOL1Q8TD10 442 aa7.02□□□□□ -1.29
SCN1A-212ENST00000636194 RBM28Q9NW13 759 aaKnown RBP7.02□□□□□ -1.29
SCN1A-212ENST00000636194 DIAPH1O60610 1272 aaKnown RBP7.02□□□□□ -1.29
SCN1A-212ENST00000636194 SERPINC1P01008 464 aa7.02□□□□□ -1.29
SCN1A-212ENST00000636194 PSME1Q06323 249 aa7.02□□□□□ -1.29
SCN1A-212ENST00000636194 KIF4BQ2VIQ3 1234 aa7.02□□□□□ -1.29
SCN1A-212ENST00000636194 CNTROBQ8N137 903 aa7.02□□□□□ -1.29
SCN1A-212ENST00000636194 TTC21AQ8NDW8 1320 aa7.02□□□□□ -1.29
SCN1A-212ENST00000636194 DNAAF4Q8WXU2 420 aa7.02□□□□□ -1.29
SCN1A-212ENST00000636194 IFFO1Q0D2I5 559 aa7.02□□□□□ -1.29
SCN1A-212ENST00000636194 BCL11BQ9C0K0 894 aaPredicted RBP7.02□□□□□ -1.29
SCN1A-212ENST00000636194 SERPINA10Q9UK55 444 aa7.02□□□□□ -1.29
SCN1A-212ENST00000636194 SETD5Q9C0A6 1442 aa7.01□□□□□ -1.29
SCN1A-212ENST00000636194 CA8P35219 290 aa7.01□□□□□ -1.29
SCN1A-212ENST00000636194 PLVAPQ9BX97 442 aa7.01□□□□□ -1.29
SCN1A-212ENST00000636194 MAP4K4O95819 1239 aaPredicted RBP7.01□□□□□ -1.29
SCN1A-212ENST00000636194 MCM2P49736 904 aa7.01□□□□□ -1.29
SCN1A-212ENST00000636194 TPD52P55327 224 aaPredicted RBP7.01□□□□□ -1.29
SCN1A-212ENST00000636194 SPATA32Q96LK8 384 aa7.01□□□□□ -1.29
SCN1A-212ENST00000636194 CRBNQ96SW2 442 aa7.01□□□□□ -1.29
SCN1A-212ENST00000636194 ANKRD1Q15327 319 aa7.01□□□□□ -1.29
SCN1A-212ENST00000636194 CCDC117Q8IWD4 279 aaPredicted RBP7.01□□□□□ -1.29
SCN1A-212ENST00000636194 CEP57L1Q8IYX8 460 aa7.01□□□□□ -1.29
SCN1A-212ENST00000636194 RPUSD2Q8IZ73 545 aaKnown RBP7.01□□□□□ -1.29
SCN1A-212ENST00000636194 KIAA1524Q8TCG1 905 aa7.01□□□□□ -1.29
SCN1A-212ENST00000636194 HAUS2Q9NVX0 235 aa7.01□□□□□ -1.29
SCN1A-212ENST00000636194 NDC80O14777 642 aa7.01□□□□□ -1.29
SCN1A-212ENST00000636194 PRC1O43663 620 aa7.01□□□□□ -1.29
SCN1A-212ENST00000636194 FAM193AP78312 1265 aa7.01□□□□□ -1.29
SCN1A-212ENST00000636194 PDE3BQ13370 1112 aa7.01□□□□□ -1.29
SCN1A-212ENST00000636194 CCDC113Q9H0I3 377 aa7.01□□□□□ -1.29
SCN1A-212ENST00000636194 BAZ1BQ9UIG0 1483 aaKnown RBP7.01□□□□□ -1.29
SCN1A-212ENST00000636194 CARMIL2Q6F5E8 1435 aa7.01□□□□□ -1.29
SCN1A-212ENST00000636194 KIF5CO60282 957 aa7.01□□□□□ -1.29
SCN1A-212ENST00000636194 SEC63Q9UGP8 760 aaKnown RBP7.01□□□□□ -1.29
SCN1A-212ENST00000636194 PSMC4P43686 418 aa7.01□□□□□ -1.29
SCN1A-212ENST00000636194 GGT6Q6P531 493 aa7.01□□□□□ -1.29
SCN1A-212ENST00000636194 RAB34Q9BZG1 259 aa7.01□□□□□ -1.29
SCN1A-212ENST00000636194 NUMA1Q14980 2115 aa7.01□□□□□ -1.29
SCN1A-212ENST00000636194 ATF3P18847 181 aa7.01□□□□□ -1.29
SCN1A-212ENST00000636194 RNF187Q5TA31 235 aaPredicted RBP7.01□□□□□ -1.29
SCN1A-212ENST00000636194 PPFIA2O75334 1257 aa7□□□□□ -1.29
SCN1A-212ENST00000636194 NGEFQ8N5V2 710 aa7□□□□□ -1.29
SCN1A-212ENST00000636194 SWAP70Q9UH65 585 aa7□□□□□ -1.29
SCN1A-212ENST00000636194 TRIM35Q9UPQ4 493 aa7□□□□□ -1.29
SCN1A-212ENST00000636194 KIF27Q86VH2 1401 aa7□□□□□ -1.29
SCN1A-212ENST00000636194 MBD3O95983 291 aa7□□□□□ -1.29
SCN1A-212ENST00000636194 ERCC5P28715 1186 aaPredicted RBP7□□□□□ -1.29
SCN1A-212ENST00000636194 LMAN1P49257 510 aa7□□□□□ -1.29
SCN1A-212ENST00000636194 ZSCAN25Q6NSZ9 544 aa7□□□□□ -1.29
SCN1A-212ENST00000636194 APBB1IPQ7Z5R6 666 aaPredicted RBP7□□□□□ -1.29
SCN1A-212ENST00000636194 PAXIP1Q6ZW49 1069 aaPredicted RBP7□□□□□ -1.29
SCN1A-212ENST00000636194 GOLGA1Q92805 767 aa7□□□□□ -1.29
SCN1A-212ENST00000636194 UTP14AQ9BVJ6 771 aaKnown RBP7□□□□□ -1.29
SCN1A-212ENST00000636194 DDX19BQ9UMR2 479 aa7□□□□□ -1.29
SCN1A-212ENST00000636194 ARHGAP35Q9NRY4 1499 aa7□□□□□ -1.29
SCN1A-212ENST00000636194 GAS8O95995 478 aa7□□□□□ -1.29
SCN1A-212ENST00000636194 MRE11P49959 708 aa7□□□□□ -1.29
SCN1A-212ENST00000636194 CEP131Q9UPN4 1083 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms