RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 AMPHP49418 695 aa26.01■■□□□ 1.75
SQSTM1-216ENST00000626660 CNGB1Q14028 1251 aaPredicted RBP26.01■■□□□ 1.75
SQSTM1-216ENST00000626660 MAP3K19Q56UN5 1328 aa26.01■■□□□ 1.75
SQSTM1-216ENST00000626660 NRAPQ86VF7 1730 aa26.01■■□□□ 1.75
SQSTM1-216ENST00000626660 MAP2P11137 1827 aaKnown RBP26■■□□□ 1.75
SQSTM1-216ENST00000626660 CAMTA1Q9Y6Y1 1673 aa26■■□□□ 1.75
SQSTM1-216ENST00000626660 EVA1CP58658 441 aa26■■□□□ 1.75
SQSTM1-216ENST00000626660 RRS1Q15050 365 aaKnown RBP26■■□□□ 1.75
SQSTM1-216ENST00000626660 TRPC5Q9UL62 973 aaPredicted RBP26■■□□□ 1.75
SQSTM1-216ENST00000626660 RXRBP28702 533 aa25.99■■□□□ 1.75
SQSTM1-216ENST00000626660 QTRT2Q9H974 415 aaKnown RBP25.99■■□□□ 1.75
SQSTM1-216ENST00000626660 RGPD5Q99666 1765 aa25.99■■□□□ 1.75
SQSTM1-216ENST00000626660 STRN4Q9NRL3 753 aa25.98■■□□□ 1.75
SQSTM1-216ENST00000626660 RTL1A6NKG5 1358 aa25.97■■□□□ 1.75
SQSTM1-216ENST00000626660 IP6K1Q92551 441 aa25.97■■□□□ 1.75
SQSTM1-216ENST00000626660 ATRNO75882 1429 aa25.97■■□□□ 1.75
SQSTM1-216ENST00000626660 UPF1Q92900 1129 aaKnown RBP eCLIP25.96■■□□□ 1.75
SQSTM1-216ENST00000626660 CCDC9Q9Y3X0 531 aaKnown RBP25.96■■□□□ 1.75
SQSTM1-216ENST00000626660 BLMP54132 1417 aaPredicted RBP25.96■■□□□ 1.75
SQSTM1-216ENST00000626660 KIF24Q5T7B8 1368 aa25.95■■□□□ 1.75
SQSTM1-216ENST00000626660 VPS72Q15906 364 aa25.95■■□□□ 1.74
SQSTM1-216ENST00000626660 AXIN2Q9Y2T1 843 aa25.95■■□□□ 1.74
SQSTM1-216ENST00000626660 COL5A2P05997 1499 aaPredicted RBP25.95■■□□□ 1.74
SQSTM1-216ENST00000626660 EMILIN1Q9Y6C2 1016 aa25.94■■□□□ 1.74
SQSTM1-216ENST00000626660 FLT4P35916 1363 aa25.94■■□□□ 1.74
SQSTM1-216ENST00000626660 PPM1GO15355 546 aaPredicted RBP25.93■■□□□ 1.74
SQSTM1-216ENST00000626660 HOXC9P31274 260 aa25.93■■□□□ 1.74
SQSTM1-216ENST00000626660 CSB-PGBD3P0DP91 1061 aa25.92■■□□□ 1.74
SQSTM1-216ENST00000626660 POLKQ9UBT6 870 aa25.92■■□□□ 1.74
SQSTM1-216ENST00000626660 PEAK1Q9H792 1746 aa25.91■■□□□ 1.74
SQSTM1-216ENST00000626660 RBM6P78332 1123 aaKnown RBP25.9■■□□□ 1.74
SQSTM1-216ENST00000626660 WDR17Q8IZU2 1322 aa25.89■■□□□ 1.74
SQSTM1-216ENST00000626660 LARP1Q6PKG0 1096 aaKnown RBP25.89■■□□□ 1.74
SQSTM1-216ENST00000626660 ANKRD24Q8TF21 1146 aa25.89■■□□□ 1.74
SQSTM1-216ENST00000626660 GJD4Q96KN9 370 aaPredicted RBP25.89■■□□□ 1.74
SQSTM1-216ENST00000626660 ERBB3P21860 1342 aa25.88■■□□□ 1.73
SQSTM1-216ENST00000626660 INSRP06213 1382 aa25.88■■□□□ 1.73
SQSTM1-216ENST00000626660 CRB1P82279 1406 aa25.88■■□□□ 1.73
SQSTM1-216ENST00000626660 SMG6Q86US8 1419 aaKnown RBP25.88■■□□□ 1.73
SQSTM1-216ENST00000626660 SPATA31A5Q5VU36 1347 aa25.88■■□□□ 1.73
SQSTM1-216ENST00000626660 SPATA31A7Q8IWB4 1347 aa25.88■■□□□ 1.73
SQSTM1-216ENST00000626660 TOM1L2Q6ZVM7 507 aa25.87■■□□□ 1.73
SQSTM1-216ENST00000626660 LTV1Q96GA3 475 aaPredicted RBP25.87■■□□□ 1.73
SQSTM1-216ENST00000626660 FAM208AQ9UK61 1670 aaKnown RBP25.86■■□□□ 1.73
SQSTM1-216ENST00000626660 HSP90AB2PQ58FF8 381 aa25.85■■□□□ 1.73
SQSTM1-216ENST00000626660 SPATA31A1Q5TZJ5 1347 aa25.85■■□□□ 1.73
SQSTM1-216ENST00000626660 CDK12Q9NYV4 1490 aaPredicted RBP25.85■■□□□ 1.73
SQSTM1-216ENST00000626660 GLI3P10071 1580 aa25.84■■□□□ 1.73
SQSTM1-216ENST00000626660 PARD3Q8TEW0 1356 aa25.83■■□□□ 1.73
SQSTM1-216ENST00000626660 NLRP2Q9NX02 1062 aa25.83■■□□□ 1.73
SQSTM1-216ENST00000626660 USP35Q9P2H5 1018 aa25.83■■□□□ 1.73
SQSTM1-216ENST00000626660 MTHFSP49914 203 aa25.82■■□□□ 1.72
SQSTM1-216ENST00000626660 RALBP1Q15311 655 aa25.82■■□□□ 1.72
SQSTM1-216ENST00000626660 CARD10Q9BWT7 1032 aa25.82■■□□□ 1.72
SQSTM1-216ENST00000626660 TCP11L2Q8N4U5 519 aa25.81■■□□□ 1.72
SQSTM1-216ENST00000626660 THRAP3Q9Y2W1 955 aaKnown RBP25.8■■□□□ 1.72
SQSTM1-216ENST00000626660 PPP2R1AP30153 589 aa25.79■■□□□ 1.72
SQSTM1-216ENST00000626660 FAM98CQ17RN3 349 aaKnown RBP25.78■■□□□ 1.72
SQSTM1-216ENST00000626660 RGPD2P0DJD1 1756 aa25.77■■□□□ 1.72
SQSTM1-216ENST00000626660 A0A0G2JS52 829 aa25.77■■□□□ 1.72
SQSTM1-216ENST00000626660 MYT1Q01538 1121 aa25.77■■□□□ 1.72
SQSTM1-216ENST00000626660 BARGINQ6ZT62 677 aa25.76■■□□□ 1.71
SQSTM1-216ENST00000626660 CFAP53Q96M91 514 aa25.76■■□□□ 1.71
SQSTM1-216ENST00000626660 EIF4A2Q14240 407 aaKnown RBP25.75■■□□□ 1.71
SQSTM1-216ENST00000626660 RGS12O14924 1447 aa25.73■■□□□ 1.71
SQSTM1-216ENST00000626660 WNK3Q9BYP7 1800 aa25.73■■□□□ 1.71
SQSTM1-216ENST00000626660 ONECUT3O60422 494 aaPredicted RBP25.73■■□□□ 1.71
SQSTM1-216ENST00000626660 NBPF6Q5VWK0 638 aa25.72■■□□□ 1.71
SQSTM1-216ENST00000626660 SEPT12Q8IYM1 358 aa25.72■■□□□ 1.71
SQSTM1-216ENST00000626660 NBPF4Q96M43 638 aa25.72■■□□□ 1.71
SQSTM1-216ENST00000626660 CDCA7Q9BWT1 371 aaPredicted RBP25.72■■□□□ 1.71
SQSTM1-216ENST00000626660 PRKRIP1Q9H875 184 aaPredicted RBP25.72■■□□□ 1.71
SQSTM1-216ENST00000626660 MYBBP1AQ9BQG0 1328 aaKnown RBP25.71■■□□□ 1.71
SQSTM1-216ENST00000626660 THSD7AQ9UPZ6 1657 aa25.71■■□□□ 1.71
SQSTM1-216ENST00000626660 DIAPH1O60610 1272 aaKnown RBP25.7■■□□□ 1.7
SQSTM1-216ENST00000626660 ANP32CO43423 234 aa25.69■■□□□ 1.7
SQSTM1-216ENST00000626660 EYA1Q99502 592 aa25.69■■□□□ 1.7
SQSTM1-216ENST00000626660 USHBP1Q8N6Y0 703 aa25.68■■□□□ 1.7
SQSTM1-216ENST00000626660 IL2RBP14784 551 aa25.67■■□□□ 1.7
SQSTM1-216ENST00000626660 IL13P35225 146 aa25.67■■□□□ 1.7
SQSTM1-216ENST00000626660 PARP4Q9UKK3 1724 aaKnown RBP25.67■■□□□ 1.7
SQSTM1-216ENST00000626660 COL3A1P02461 1466 aaPredicted RBP25.66■■□□□ 1.7
SQSTM1-216ENST00000626660 DISP2A7MBM2 1401 aa25.66■■□□□ 1.7
SQSTM1-216ENST00000626660 BRWD3Q6RI45 1802 aa25.66■■□□□ 1.7
SQSTM1-216ENST00000626660 RAPGEF4Q8WZA2 1011 aa25.65■■□□□ 1.7
SQSTM1-216ENST00000626660 IGSF1Q8N6C5 1336 aa25.64■■□□□ 1.7
SQSTM1-216ENST00000626660 NCAPD2Q15021 1401 aa25.64■■□□□ 1.7
SQSTM1-216ENST00000626660 NUDCQ9Y266 331 aa25.64■■□□□ 1.7
SQSTM1-216ENST00000626660 DDB1Q16531 1140 aa25.63■■□□□ 1.69
SQSTM1-216ENST00000626660 RGPD1P0DJD0 1748 aa25.63■■□□□ 1.69
SQSTM1-216ENST00000626660 TATP17735 454 aaPredicted RBP25.62■■□□□ 1.69
SQSTM1-216ENST00000626660 PDE3BQ13370 1112 aa25.62■■□□□ 1.69
SQSTM1-216ENST00000626660 LRRC37A3O60309 1634 aa25.62■■□□□ 1.69
SQSTM1-216ENST00000626660 EXOC5O00471 708 aa25.61■■□□□ 1.69
SQSTM1-216ENST00000626660 U2SURPO15042 1029 aaKnown RBP25.61■■□□□ 1.69
SQSTM1-216ENST00000626660 KRT27Q7Z3Y8 459 aa25.61■■□□□ 1.69
SQSTM1-216ENST00000626660 MEGF6O75095 1541 aa25.59■■□□□ 1.69
SQSTM1-216ENST00000626660 TNS2Q63HR2 1409 aa25.58■■□□□ 1.69
SQSTM1-216ENST00000626660 SULT6B1Q6IMI4 303 aa25.58■■□□□ 1.69
SQSTM1-216ENST00000626660 OVOS2A0A0G2JMS6 1433 aa25.57■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 82.1 ms