RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 PRDM11Q9NQV5 511 aa26.84■■□□□ 1.89
UPF3A-211ENST00000618700 PLCH1Q4KWH8 1693 aa26.84■■□□□ 1.89
UPF3A-211ENST00000618700 PARD3Q8TEW0 1356 aa26.84■■□□□ 1.89
UPF3A-211ENST00000618700 FAM83GA6ND36 823 aa26.83■■□□□ 1.89
UPF3A-211ENST00000618700 MEX3CQ5U5Q3 659 aaKnown RBP26.83■■□□□ 1.89
UPF3A-211ENST00000618700 MAP3K19Q56UN5 1328 aa26.83■■□□□ 1.89
UPF3A-211ENST00000618700 SMG6Q86US8 1419 aaKnown RBP26.82■■□□□ 1.88
UPF3A-211ENST00000618700 SLIT2O94813 1529 aa26.82■■□□□ 1.88
UPF3A-211ENST00000618700 PEAK1Q9H792 1746 aa26.81■■□□□ 1.88
UPF3A-211ENST00000618700 NWD2Q9ULI1 1742 aa26.81■■□□□ 1.88
UPF3A-211ENST00000618700 RTL1A6NKG5 1358 aa26.81■■□□□ 1.88
UPF3A-211ENST00000618700 TNNT2P45379 298 aaPredicted RBP26.8■■□□□ 1.88
UPF3A-211ENST00000618700 CNGB1Q14028 1251 aaPredicted RBP26.8■■□□□ 1.88
UPF3A-211ENST00000618700 RRS1Q15050 365 aaKnown RBP26.8■■□□□ 1.88
UPF3A-211ENST00000618700 CHRNA2Q15822 529 aa26.8■■□□□ 1.88
UPF3A-211ENST00000618700 C8orf37Q96NL8 207 aa26.8■■□□□ 1.88
UPF3A-211ENST00000618700 MAP2P11137 1827 aaKnown RBP26.79■■□□□ 1.88
UPF3A-211ENST00000618700 KIF24Q5T7B8 1368 aa26.79■■□□□ 1.88
UPF3A-211ENST00000618700 CAMTA1Q9Y6Y1 1673 aa26.79■■□□□ 1.88
UPF3A-211ENST00000618700 NRAPQ86VF7 1730 aa26.78■■□□□ 1.88
UPF3A-211ENST00000618700 FNBP4Q8N3X1 1017 aaPredicted RBP26.77■■□□□ 1.88
UPF3A-211ENST00000618700 POLKQ9UBT6 870 aa26.77■■□□□ 1.88
UPF3A-211ENST00000618700 EMILIN1Q9Y6C2 1016 aa26.77■■□□□ 1.88
UPF3A-211ENST00000618700 NGLY1Q96IV0 654 aa26.76■■□□□ 1.87
UPF3A-211ENST00000618700 TNKS1BP1Q9C0C2 1729 aaKnown RBP26.76■■□□□ 1.87
UPF3A-211ENST00000618700 BLMP54132 1417 aaPredicted RBP26.75■■□□□ 1.87
UPF3A-211ENST00000618700 ZBTB7CA1YPR0 619 aa26.75■■□□□ 1.87
UPF3A-211ENST00000618700 BCL9LQ86UU0 1499 aa26.74■■□□□ 1.87
UPF3A-211ENST00000618700 FLT4P35916 1363 aa26.74■■□□□ 1.87
UPF3A-211ENST00000618700 IP6K1Q92551 441 aa26.74■■□□□ 1.87
UPF3A-211ENST00000618700 AXIN2Q9Y2T1 843 aa26.74■■□□□ 1.87
UPF3A-211ENST00000618700 COL5A2P05997 1499 aaPredicted RBP26.74■■□□□ 1.87
UPF3A-211ENST00000618700 CDK12Q9NYV4 1490 aaPredicted RBP26.74■■□□□ 1.87
UPF3A-211ENST00000618700 AFF2P51816 1311 aa26.73■■□□□ 1.87
UPF3A-211ENST00000618700 HOXC9P31274 260 aa26.73■■□□□ 1.87
UPF3A-211ENST00000618700 RALBP1Q15311 655 aa26.73■■□□□ 1.87
UPF3A-211ENST00000618700 POTEAQ6S8J7 498 aa26.73■■□□□ 1.87
UPF3A-211ENST00000618700 RGPD5Q99666 1765 aa26.73■■□□□ 1.87
UPF3A-211ENST00000618700 AMPHP49418 695 aa26.72■■□□□ 1.87
UPF3A-211ENST00000618700 PRKRIP1Q9H875 184 aaPredicted RBP26.72■■□□□ 1.87
UPF3A-211ENST00000618700 BTG4Q9NY30 223 aa26.72■■□□□ 1.87
UPF3A-211ENST00000618700 PPP2R1AP30153 589 aa26.7■■□□□ 1.86
UPF3A-211ENST00000618700 ZNF772Q68DY9 489 aaPredicted RBP26.69■■□□□ 1.86
UPF3A-211ENST00000618700 INSRP06213 1382 aa26.69■■□□□ 1.86
UPF3A-211ENST00000618700 ERBB3P21860 1342 aa26.67■■□□□ 1.86
UPF3A-211ENST00000618700 MTHFSP49914 203 aa26.67■■□□□ 1.86
UPF3A-211ENST00000618700 UNC5CLQ8IV45 518 aa26.67■■□□□ 1.86
UPF3A-211ENST00000618700 USP21Q9UK80 565 aa26.67■■□□□ 1.86
UPF3A-211ENST00000618700 PPM1GO15355 546 aaPredicted RBP26.66■■□□□ 1.86
UPF3A-211ENST00000618700 HSP90AB2PQ58FF8 381 aa26.66■■□□□ 1.86
UPF3A-211ENST00000618700 ATRNO75882 1429 aa26.65■■□□□ 1.86
UPF3A-211ENST00000618700 SOCS7O14512 581 aa26.65■■□□□ 1.86
UPF3A-211ENST00000618700 COL3A1P02461 1466 aaPredicted RBP26.65■■□□□ 1.86
UPF3A-211ENST00000618700 MYBBP1AQ9BQG0 1328 aaKnown RBP26.65■■□□□ 1.86
UPF3A-211ENST00000618700 FAM208AQ9UK61 1670 aaKnown RBP26.64■■□□□ 1.86
UPF3A-211ENST00000618700 ANKRD24Q8TF21 1146 aa26.63■■□□□ 1.85
UPF3A-211ENST00000618700 WDR17Q8IZU2 1322 aa26.63■■□□□ 1.85
UPF3A-211ENST00000618700 ANP32CO43423 234 aa26.62■■□□□ 1.85
UPF3A-211ENST00000618700 STRN4Q9NRL3 753 aa26.62■■□□□ 1.85
UPF3A-211ENST00000618700 VPS72Q15906 364 aa26.61■■□□□ 1.85
UPF3A-211ENST00000618700 CRB1P82279 1406 aa26.6■■□□□ 1.85
UPF3A-211ENST00000618700 LARP1Q6PKG0 1096 aaKnown RBP26.6■■□□□ 1.85
UPF3A-211ENST00000618700 SAMD1Q6SPF0 538 aaPredicted RBP26.6■■□□□ 1.85
UPF3A-211ENST00000618700 EVA1CP58658 441 aa26.59■■□□□ 1.85
UPF3A-211ENST00000618700 DIEXFQ68CQ4 756 aaKnown RBP26.59■■□□□ 1.85
UPF3A-211ENST00000618700 EIF4A2Q14240 407 aaKnown RBP26.58■■□□□ 1.85
UPF3A-211ENST00000618700 TRPC5Q9UL62 973 aaPredicted RBP26.58■■□□□ 1.85
UPF3A-211ENST00000618700 SPINK5Q9NQ38 1064 aaPredicted RBP26.57■■□□□ 1.84
UPF3A-211ENST00000618700 SPATA31A5Q5VU36 1347 aa26.57■■□□□ 1.84
UPF3A-211ENST00000618700 SPATA31A7Q8IWB4 1347 aa26.57■■□□□ 1.84
UPF3A-211ENST00000618700 GLI3P10071 1580 aa26.56■■□□□ 1.84
UPF3A-211ENST00000618700 LTV1Q96GA3 475 aaPredicted RBP26.56■■□□□ 1.84
UPF3A-211ENST00000618700 CSB-PGBD3P0DP91 1061 aa26.55■■□□□ 1.84
UPF3A-211ENST00000618700 RGPD1P0DJD0 1748 aa26.55■■□□□ 1.84
UPF3A-211ENST00000618700 SPATA31A1Q5TZJ5 1347 aa26.55■■□□□ 1.84
UPF3A-211ENST00000618700 RGPD2P0DJD1 1756 aa26.55■■□□□ 1.84
UPF3A-211ENST00000618700 NCAPD2Q15021 1401 aa26.55■■□□□ 1.84
UPF3A-211ENST00000618700 CARD10Q9BWT7 1032 aa26.54■■□□□ 1.84
UPF3A-211ENST00000618700 QTRT2Q9H974 415 aaKnown RBP26.54■■□□□ 1.84
UPF3A-211ENST00000618700 IL13P35225 146 aa26.53■■□□□ 1.84
UPF3A-211ENST00000618700 TOM1L2Q6ZVM7 507 aa26.53■■□□□ 1.84
UPF3A-211ENST00000618700 CFAP53Q96M91 514 aa26.53■■□□□ 1.84
UPF3A-211ENST00000618700 GJD4Q96KN9 370 aaPredicted RBP26.52■■□□□ 1.84
UPF3A-211ENST00000618700 RXRBP28702 533 aa26.51■■□□□ 1.83
UPF3A-211ENST00000618700 NLRP2Q9NX02 1062 aa26.51■■□□□ 1.83
UPF3A-211ENST00000618700 IGSF1Q8N6C5 1336 aa26.5■■□□□ 1.83
UPF3A-211ENST00000618700 DIAPH1O60610 1272 aaKnown RBP26.5■■□□□ 1.83
UPF3A-211ENST00000618700 NBPF6Q5VWK0 638 aa26.5■■□□□ 1.83
UPF3A-211ENST00000618700 NBPF4Q96M43 638 aa26.5■■□□□ 1.83
UPF3A-211ENST00000618700 WNK3Q9BYP7 1800 aa26.5■■□□□ 1.83
UPF3A-211ENST00000618700 EYA1Q99502 592 aa26.49■■□□□ 1.83
UPF3A-211ENST00000618700 CCDC9Q9Y3X0 531 aaKnown RBP26.49■■□□□ 1.83
UPF3A-211ENST00000618700 THRAP3Q9Y2W1 955 aaKnown RBP26.48■■□□□ 1.83
UPF3A-211ENST00000618700 DISP2A7MBM2 1401 aa26.48■■□□□ 1.83
UPF3A-211ENST00000618700 RBM6P78332 1123 aaKnown RBP26.47■■□□□ 1.83
UPF3A-211ENST00000618700 TCP11L2Q8N4U5 519 aa26.47■■□□□ 1.83
UPF3A-211ENST00000618700 USP35Q9P2H5 1018 aa26.46■■□□□ 1.83
UPF3A-211ENST00000618700 THSD7AQ9UPZ6 1657 aa26.46■■□□□ 1.83
UPF3A-211ENST00000618700 RGS12O14924 1447 aa26.46■■□□□ 1.83
UPF3A-211ENST00000618700 CAPN15O75808 1086 aa26.45■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms