RNA–Protein interactions for RNA: ENST00000618395.4

COL5A1-208, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL5A1, Length 8,437 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-208ENST00000618395 K7ELQ4 463 aaPredicted RBP17.66■□□□□ 0.42
COL5A1-208ENST00000618395 LRCH2Q5VUJ6 765 aa17.65■□□□□ 0.42
COL5A1-208ENST00000618395 CEP57L1Q8IYX8 460 aa17.65■□□□□ 0.42
COL5A1-208ENST00000618395 URI1O94763 535 aaPredicted RBP17.65■□□□□ 0.42
COL5A1-208ENST00000618395 CCDC6Q16204 474 aa17.65■□□□□ 0.42
COL5A1-208ENST00000618395 LNPKQ9C0E8 428 aa17.65■□□□□ 0.42
COL5A1-208ENST00000618395 FAM184BQ9ULE4 1060 aa17.65■□□□□ 0.42
COL5A1-208ENST00000618395 ERC1Q8IUD2 1116 aa17.64■□□□□ 0.41
COL5A1-208ENST00000618395 ANKRD18BA2A2Z9 1011 aa17.64■□□□□ 0.41
COL5A1-208ENST00000618395 IFIT2P09913 472 aaKnown RBP17.64■□□□□ 0.41
COL5A1-208ENST00000618395 DDX23Q9BUQ8 820 aaKnown RBP17.64■□□□□ 0.41
COL5A1-208ENST00000618395 NEMFO60524 1076 aa17.63■□□□□ 0.41
COL5A1-208ENST00000618395 ARFGAP3Q9NP61 516 aa17.63■□□□□ 0.41
COL5A1-208ENST00000618395 ERC2O15083 957 aa17.63■□□□□ 0.41
COL5A1-208ENST00000618395 NEK4P51957 841 aa17.63■□□□□ 0.41
COL5A1-208ENST00000618395 DNAJC21Q5F1R6 531 aaKnown RBP17.63■□□□□ 0.41
COL5A1-208ENST00000618395 NGEFQ8N5V2 710 aa17.63■□□□□ 0.41
COL5A1-208ENST00000618395 UPF3BQ9BZI7 483 aaKnown RBP17.63■□□□□ 0.41
COL5A1-208ENST00000618395 NUP62CLQ9H1M0 184 aa17.63■□□□□ 0.41
COL5A1-208ENST00000618395 RALYLQ86SE5 291 aaKnown RBP17.63■□□□□ 0.41
COL5A1-208ENST00000618395 SCLT1Q96NL6 688 aa17.62■□□□□ 0.41
COL5A1-208ENST00000618395 FHAD1B1AJZ9 1412 aa17.62■□□□□ 0.41
COL5A1-208ENST00000618395 TAF4BQ92750 862 aa17.62■□□□□ 0.41
COL5A1-208ENST00000618395 FBF1Q8TES7 1133 aa17.62■□□□□ 0.41
COL5A1-208ENST00000618395 UBE4AQ14139 1066 aa17.62■□□□□ 0.41
COL5A1-208ENST00000618395 OTUD6BQ8N6M0 293 aa17.61■□□□□ 0.41
COL5A1-208ENST00000618395 MYCBPQ99417 103 aaPredicted RBP17.61■□□□□ 0.41
COL5A1-208ENST00000618395 ARHGAP35Q9NRY4 1499 aa17.61■□□□□ 0.41
COL5A1-208ENST00000618395 EBAG9O00559 213 aa17.61■□□□□ 0.41
COL5A1-208ENST00000618395 MAP3K11Q16584 847 aa17.61■□□□□ 0.41
COL5A1-208ENST00000618395 ZNF330Q9Y3S2 320 aaPredicted RBP17.61■□□□□ 0.41
COL5A1-208ENST00000618395 DHX16O60231 1041 aaKnown RBP17.61■□□□□ 0.41
COL5A1-208ENST00000618395 CCDC83Q8IWF9 413 aa17.61■□□□□ 0.41
COL5A1-208ENST00000618395 ZNF397Q8NF99 534 aaPredicted RBP17.61■□□□□ 0.41
COL5A1-208ENST00000618395 CNKSR2Q8WXI2 1034 aa17.61■□□□□ 0.41
COL5A1-208ENST00000618395 ME1P48163 572 aa17.6■□□□□ 0.41
COL5A1-208ENST00000618395 G3V3G9 751 aa17.6■□□□□ 0.41
COL5A1-208ENST00000618395 CAPN2P17655 700 aa17.6■□□□□ 0.41
COL5A1-208ENST00000618395 STK38Q15208 465 aa17.6■□□□□ 0.41
COL5A1-208ENST00000618395 DCAF8Q5TAQ9 597 aa17.6■□□□□ 0.41
COL5A1-208ENST00000618395 SPECC1Q5M775 1068 aa17.6■□□□□ 0.41
COL5A1-208ENST00000618395 KIF4BQ2VIQ3 1234 aa17.6■□□□□ 0.41
COL5A1-208ENST00000618395 RAB3GAP2Q9H2M9 1393 aa17.6■□□□□ 0.41
COL5A1-208ENST00000618395 PRKRIP1Q9H875 184 aaPredicted RBP17.59■□□□□ 0.41
COL5A1-208ENST00000618395 FMNL3Q8IVF7 1028 aa17.59■□□□□ 0.41
COL5A1-208ENST00000618395 RAI14Q9P0K7 980 aa17.59■□□□□ 0.41
COL5A1-208ENST00000618395 SH2D4BQ5SQS7 431 aa17.59■□□□□ 0.41
COL5A1-208ENST00000618395 HYPKQ9NX55 129 aa17.59■□□□□ 0.41
COL5A1-208ENST00000618395 KIF27Q86VH2 1401 aa17.59■□□□□ 0.41
COL5A1-208ENST00000618395 NOL3O60936 208 aaKnown RBP17.59■□□□□ 0.41
COL5A1-208ENST00000618395 CFAP100Q494V2 611 aa17.58■□□□□ 0.41
COL5A1-208ENST00000618395 CEP135Q66GS9 1140 aa17.58■□□□□ 0.4
COL5A1-208ENST00000618395 PAF1Q8N7H5 531 aa17.58■□□□□ 0.4
COL5A1-208ENST00000618395 KRI1Q8N9T8 703 aaKnown RBP17.58■□□□□ 0.4
COL5A1-208ENST00000618395 CEP112Q8N8E3 955 aa17.58■□□□□ 0.4
COL5A1-208ENST00000618395 CEBPZQ03701 1054 aaKnown RBP17.58■□□□□ 0.4
COL5A1-208ENST00000618395 GOPCQ9HD26 462 aa17.58■□□□□ 0.4
COL5A1-208ENST00000618395 NAA15Q9BXJ9 866 aaKnown RBP17.57■□□□□ 0.4
COL5A1-208ENST00000618395 NSRP1Q9H0G5 558 aaKnown RBP17.57■□□□□ 0.4
COL5A1-208ENST00000618395 CCDC183Q5T5S1 534 aa17.57■□□□□ 0.4
COL5A1-208ENST00000618395 GSDMDP57764 484 aa17.56■□□□□ 0.4
COL5A1-208ENST00000618395 NEBLO76041 1014 aa17.56■□□□□ 0.4
COL5A1-208ENST00000618395 CCDC121Q6ZUS5 278 aa17.56■□□□□ 0.4
COL5A1-208ENST00000618395 CNTROBQ8N137 903 aa17.56■□□□□ 0.4
COL5A1-208ENST00000618395 CLIP2Q9UDT6 1046 aa17.56■□□□□ 0.4
COL5A1-208ENST00000618395 RRP7AQ9Y3A4 280 aaKnown RBP17.56■□□□□ 0.4
COL5A1-208ENST00000618395 HSF2BPO75031 334 aa17.56■□□□□ 0.4
COL5A1-208ENST00000618395 CDK5RAP3Q96JB5 506 aa17.56■□□□□ 0.4
COL5A1-208ENST00000618395 ANKRD1Q15327 319 aa17.55■□□□□ 0.4
COL5A1-208ENST00000618395 MAP2K2P36507 400 aa17.55■□□□□ 0.4
COL5A1-208ENST00000618395 AP1ARQ63HQ0 302 aa17.55■□□□□ 0.4
COL5A1-208ENST00000618395 TAOK3Q9H2K8 898 aa17.55■□□□□ 0.4
COL5A1-208ENST00000618395 C9orf78Q9NZ63 289 aaPredicted RBP17.55■□□□□ 0.4
COL5A1-208ENST00000618395 CCDC158Q5M9N0 1113 aa17.55■□□□□ 0.4
COL5A1-208ENST00000618395 CCDC171Q6TFL3 1326 aa17.55■□□□□ 0.4
COL5A1-208ENST00000618395 PAFAH1B1P43034 410 aa17.55■□□□□ 0.4
COL5A1-208ENST00000618395 ANKRD30AQ9BXX3 1397 aa17.55■□□□□ 0.4
COL5A1-208ENST00000618395 DRC1Q96MC2 740 aa17.54■□□□□ 0.4
COL5A1-208ENST00000618395 SNW1Q13573 536 aaKnown RBP17.54■□□□□ 0.4
COL5A1-208ENST00000618395 WDR63Q8IWG1 891 aa17.54■□□□□ 0.4
COL5A1-208ENST00000618395 CLNS1AP54105 237 aaKnown RBP17.54■□□□□ 0.4
COL5A1-208ENST00000618395 MSH5O43196 834 aa17.54■□□□□ 0.4
COL5A1-208ENST00000618395 SPA17Q15506 151 aa17.54■□□□□ 0.4
COL5A1-208ENST00000618395 OGFRQ9NZT2 677 aa17.54■□□□□ 0.4
COL5A1-208ENST00000618395 CCDC50Q8IVM0 306 aa17.54■□□□□ 0.4
COL5A1-208ENST00000618395 SPATA32Q96LK8 384 aa17.54■□□□□ 0.4
COL5A1-208ENST00000618395 FEZ2Q9UHY8 353 aaPredicted RBP17.53■□□□□ 0.4
COL5A1-208ENST00000618395 SRRTQ9BXP5 876 aaKnown RBP17.53■□□□□ 0.4
COL5A1-208ENST00000618395 ZBTB17Q13105 803 aa17.53■□□□□ 0.4
COL5A1-208ENST00000618395 PSMD1Q99460 953 aa17.53■□□□□ 0.4
COL5A1-208ENST00000618395 LUC7L2Q9Y383 392 aaKnown RBP17.52■□□□□ 0.4
COL5A1-208ENST00000618395 CEP120Q8N960 986 aa17.52■□□□□ 0.4
COL5A1-208ENST00000618395 HSP90AB4PQ58FF6 505 aa17.52■□□□□ 0.39
COL5A1-208ENST00000618395 VGFO15240 615 aaPredicted RBP17.52■□□□□ 0.39
COL5A1-208ENST00000618395 ZWINTO95229 277 aa17.52■□□□□ 0.39
COL5A1-208ENST00000618395 API5Q9BZZ5 524 aaKnown RBP17.52■□□□□ 0.39
COL5A1-208ENST00000618395 GSTTP1A0A1W2PQM5 241 aa17.51■□□□□ 0.39
COL5A1-208ENST00000618395 CCDC114Q96M63 670 aa17.51■□□□□ 0.39
COL5A1-208ENST00000618395 ZMAT2Q96NC0 199 aaKnown RBP17.51■□□□□ 0.39
COL5A1-208ENST00000618395 KRBA2Q6ZNG9 492 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms