RNA–Protein interactions for RNA: ENST00000602784.1

RNF40-212, Transcript of ring finger protein 40, humanhuman

TSL 3

Gene RNF40, Length 991 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-212ENST00000602784 KIF24Q5T7B8 1368 aa18.95■□□□□ 0.62
RNF40-212ENST00000602784 RXRBP28702 533 aa18.95■□□□□ 0.62
RNF40-212ENST00000602784 EVA1CP58658 441 aa18.95■□□□□ 0.62
RNF40-212ENST00000602784 MORC1Q86VD1 984 aa18.95■□□□□ 0.62
RNF40-212ENST00000602784 IP6K1Q92551 441 aa18.95■□□□□ 0.62
RNF40-212ENST00000602784 GJD4Q96KN9 370 aaPredicted RBP18.95■□□□□ 0.62
RNF40-212ENST00000602784 LTN1O94822 1766 aa18.95■□□□□ 0.62
RNF40-212ENST00000602784 ZNF316A6NFI3 1004 aaPredicted RBP18.94■□□□□ 0.62
RNF40-212ENST00000602784 FBLN1P23142 703 aa18.94■□□□□ 0.62
RNF40-212ENST00000602784 COL5A2P05997 1499 aaPredicted RBP18.94■□□□□ 0.62
RNF40-212ENST00000602784 RTL1A6NKG5 1358 aa18.93■□□□□ 0.62
RNF40-212ENST00000602784 BLMP54132 1417 aaPredicted RBP18.93■□□□□ 0.62
RNF40-212ENST00000602784 AMPHP49418 695 aa18.92■□□□□ 0.62
RNF40-212ENST00000602784 RRS1Q15050 365 aaKnown RBP18.92■□□□□ 0.62
RNF40-212ENST00000602784 STRN4Q9NRL3 753 aa18.92■□□□□ 0.62
RNF40-212ENST00000602784 SPATA31A5Q5VU36 1347 aa18.92■□□□□ 0.62
RNF40-212ENST00000602784 SPATA31A7Q8IWB4 1347 aa18.92■□□□□ 0.62
RNF40-212ENST00000602784 CDK12Q9NYV4 1490 aaPredicted RBP18.91■□□□□ 0.62
RNF40-212ENST00000602784 DDX10Q13206 875 aaKnown RBP18.91■□□□□ 0.62
RNF40-212ENST00000602784 HOXC9P31274 260 aa18.9■□□□□ 0.62
RNF40-212ENST00000602784 LARP1Q6PKG0 1096 aaKnown RBP18.9■□□□□ 0.62
RNF40-212ENST00000602784 POLKQ9UBT6 870 aa18.9■□□□□ 0.62
RNF40-212ENST00000602784 CCDC9Q9Y3X0 531 aaKnown RBP18.9■□□□□ 0.62
RNF40-212ENST00000602784 WDR17Q8IZU2 1322 aa18.9■□□□□ 0.62
RNF40-212ENST00000602784 RGPD5Q99666 1765 aa18.89■□□□□ 0.61
RNF40-212ENST00000602784 ONECUT3O60422 494 aaPredicted RBP18.89■□□□□ 0.61
RNF40-212ENST00000602784 CC2D1BQ5T0F9 858 aaKnown RBP18.89■□□□□ 0.61
RNF40-212ENST00000602784 ERBB3P21860 1342 aa18.89■□□□□ 0.61
RNF40-212ENST00000602784 SPATA31A1Q5TZJ5 1347 aa18.89■□□□□ 0.61
RNF40-212ENST00000602784 FLT4P35916 1363 aa18.89■□□□□ 0.61
RNF40-212ENST00000602784 CRB1P82279 1406 aa18.89■□□□□ 0.61
RNF40-212ENST00000602784 TNNT2P45379 298 aaPredicted RBP18.88■□□□□ 0.61
RNF40-212ENST00000602784 EMILIN1Q9Y6C2 1016 aa18.88■□□□□ 0.61
RNF40-212ENST00000602784 INSRP06213 1382 aa18.88■□□□□ 0.61
RNF40-212ENST00000602784 GLI3P10071 1580 aa18.88■□□□□ 0.61
RNF40-212ENST00000602784 MAP2P11137 1827 aaKnown RBP18.88■□□□□ 0.61
RNF40-212ENST00000602784 ANKRD24Q8TF21 1146 aa18.87■□□□□ 0.61
RNF40-212ENST00000602784 THRAP3Q9Y2W1 955 aaKnown RBP18.87■□□□□ 0.61
RNF40-212ENST00000602784 SMG6Q86US8 1419 aaKnown RBP18.86■□□□□ 0.61
RNF40-212ENST00000602784 CSB-PGBD3P0DP91 1061 aa18.86■□□□□ 0.61
RNF40-212ENST00000602784 TOM1L2Q6ZVM7 507 aa18.86■□□□□ 0.61
RNF40-212ENST00000602784 CARD10Q9BWT7 1032 aa18.86■□□□□ 0.61
RNF40-212ENST00000602784 BARGINQ6ZT62 677 aa18.85■□□□□ 0.61
RNF40-212ENST00000602784 ILDR2Q71H61 639 aa18.85■□□□□ 0.61
RNF40-212ENST00000602784 TCP11L2Q8N4U5 519 aa18.85■□□□□ 0.61
RNF40-212ENST00000602784 PEAK1Q9H792 1746 aa18.85■□□□□ 0.61
RNF40-212ENST00000602784 PPM1GO15355 546 aaPredicted RBP18.84■□□□□ 0.61
RNF40-212ENST00000602784 HSP90AB2PQ58FF8 381 aa18.84■□□□□ 0.61
RNF40-212ENST00000602784 FAM98CQ17RN3 349 aaKnown RBP18.82■□□□□ 0.6
RNF40-212ENST00000602784 FAM208AQ9UK61 1670 aaKnown RBP18.82■□□□□ 0.6
RNF40-212ENST00000602784 NLRP2Q9NX02 1062 aa18.81■□□□□ 0.6
RNF40-212ENST00000602784 USP35Q9P2H5 1018 aa18.81■□□□□ 0.6
RNF40-212ENST00000602784 RGS12O14924 1447 aa18.81■□□□□ 0.6
RNF40-212ENST00000602784 MTHFSP49914 203 aa18.8■□□□□ 0.6
RNF40-212ENST00000602784 SEPT12Q8IYM1 358 aa18.8■□□□□ 0.6
RNF40-212ENST00000602784 LTV1Q96GA3 475 aaPredicted RBP18.8■□□□□ 0.6
RNF40-212ENST00000602784 CDCA7Q9BWT1 371 aaPredicted RBP18.8■□□□□ 0.6
RNF40-212ENST00000602784 PARD3Q8TEW0 1356 aa18.79■□□□□ 0.6
RNF40-212ENST00000602784 CNGB1Q14028 1251 aaPredicted RBP18.78■□□□□ 0.6
RNF40-212ENST00000602784 THSD7AQ9UPZ6 1657 aa18.78■□□□□ 0.6
RNF40-212ENST00000602784 RALBP1Q15311 655 aa18.77■□□□□ 0.6
RNF40-212ENST00000602784 NBPF6Q5VWK0 638 aa18.76■□□□□ 0.59
RNF40-212ENST00000602784 NBPF4Q96M43 638 aa18.76■□□□□ 0.59
RNF40-212ENST00000602784 DISP2A7MBM2 1401 aa18.75■□□□□ 0.59
RNF40-212ENST00000602784 PPP2R1AP30153 589 aa18.75■□□□□ 0.59
RNF40-212ENST00000602784 EIF4A2Q14240 407 aaKnown RBP18.75■□□□□ 0.59
RNF40-212ENST00000602784 A0A0G2JS52 829 aa18.74■□□□□ 0.59
RNF40-212ENST00000602784 MYT1Q01538 1121 aa18.74■□□□□ 0.59
RNF40-212ENST00000602784 IL2RBP14784 551 aa18.73■□□□□ 0.59
RNF40-212ENST00000602784 NCAPD2Q15021 1401 aa18.73■□□□□ 0.59
RNF40-212ENST00000602784 PARP4Q9UKK3 1724 aaKnown RBP18.72■□□□□ 0.59
RNF40-212ENST00000602784 IL13P35225 146 aa18.72■□□□□ 0.59
RNF40-212ENST00000602784 KRT27Q7Z3Y8 459 aa18.72■□□□□ 0.59
RNF40-212ENST00000602784 EYA1Q99502 592 aa18.72■□□□□ 0.59
RNF40-212ENST00000602784 RGPD2P0DJD1 1756 aa18.71■□□□□ 0.59
RNF40-212ENST00000602784 WNK3Q9BYP7 1800 aa18.71■□□□□ 0.59
RNF40-212ENST00000602784 BRWD3Q6RI45 1802 aa18.7■□□□□ 0.58
RNF40-212ENST00000602784 DIAPH1O60610 1272 aaKnown RBP18.7■□□□□ 0.58
RNF40-212ENST00000602784 PDE3BQ13370 1112 aa18.7■□□□□ 0.58
RNF40-212ENST00000602784 DDB1Q16531 1140 aa18.7■□□□□ 0.58
RNF40-212ENST00000602784 CFAP53Q96M91 514 aa18.7■□□□□ 0.58
RNF40-212ENST00000602784 IGSF1Q8N6C5 1336 aa18.7■□□□□ 0.58
RNF40-212ENST00000602784 EXOC5O00471 708 aa18.69■□□□□ 0.58
RNF40-212ENST00000602784 PRKRIP1Q9H875 184 aaPredicted RBP18.69■□□□□ 0.58
RNF40-212ENST00000602784 USHBP1Q8N6Y0 703 aa18.68■□□□□ 0.58
RNF40-212ENST00000602784 RAPGEF4Q8WZA2 1011 aa18.68■□□□□ 0.58
RNF40-212ENST00000602784 COL3A1P02461 1466 aaPredicted RBP18.68■□□□□ 0.58
RNF40-212ENST00000602784 PLEKHG2Q9H7P9 1386 aa18.68■□□□□ 0.58
RNF40-212ENST00000602784 MYBBP1AQ9BQG0 1328 aaKnown RBP18.67■□□□□ 0.58
RNF40-212ENST00000602784 LRRC37A3O60309 1634 aa18.67■□□□□ 0.58
RNF40-212ENST00000602784 RGPD1P0DJD0 1748 aa18.66■□□□□ 0.58
RNF40-212ENST00000602784 OVOS2A0A0G2JMS6 1433 aa18.66■□□□□ 0.58
RNF40-212ENST00000602784 TNS2Q63HR2 1409 aa18.66■□□□□ 0.58
RNF40-212ENST00000602784 TATP17735 454 aaPredicted RBP18.65■□□□□ 0.58
RNF40-212ENST00000602784 KDRP35968 1356 aa18.65■□□□□ 0.58
RNF40-212ENST00000602784 MEGF6O75095 1541 aa18.64■□□□□ 0.58
RNF40-212ENST00000602784 SOCS7O14512 581 aa18.64■□□□□ 0.57
RNF40-212ENST00000602784 FAM196AQ6ZSG2 479 aa18.64■□□□□ 0.57
RNF40-212ENST00000602784 ZCRB1Q8TBF4 217 aaKnown RBP18.64■□□□□ 0.57
RNF40-212ENST00000602784 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms