RNA–Protein interactions for RNA: ENST00000600320.5

SHKBP1-222, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 913 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-222ENST00000600320 AMPHP49418 695 aa27.13■■□□□ 1.93
SHKBP1-222ENST00000600320 NGLY1Q96IV0 654 aa27.13■■□□□ 1.93
SHKBP1-222ENST00000600320 PHF23Q9BUL5 403 aaPredicted RBP27.13■■□□□ 1.93
SHKBP1-222ENST00000600320 HOXC9P31274 260 aa27.12■■□□□ 1.93
SHKBP1-222ENST00000600320 IP6K1Q92551 441 aa27.12■■□□□ 1.93
SHKBP1-222ENST00000600320 ABCC6O95255 1503 aa27.11■■□□□ 1.93
SHKBP1-222ENST00000600320 PPM1GO15355 546 aaPredicted RBP27.11■■□□□ 1.93
SHKBP1-222ENST00000600320 MTHFSP49914 203 aa27.11■■□□□ 1.93
SHKBP1-222ENST00000600320 RGPD5Q99666 1765 aa27.11■■□□□ 1.93
SHKBP1-222ENST00000600320 RTL1A6NKG5 1358 aa27.1■■□□□ 1.93
SHKBP1-222ENST00000600320 FNBP4Q8N3X1 1017 aaPredicted RBP27.1■■□□□ 1.93
SHKBP1-222ENST00000600320 BTG4Q9NY30 223 aa27.1■■□□□ 1.93
SHKBP1-222ENST00000600320 FLT4P35916 1363 aa27.09■■□□□ 1.93
SHKBP1-222ENST00000600320 HSP90AB2PQ58FF8 381 aa27.09■■□□□ 1.93
SHKBP1-222ENST00000600320 DIEXFQ68CQ4 756 aaKnown RBP27.09■■□□□ 1.93
SHKBP1-222ENST00000600320 AFF2P51816 1311 aa27.09■■□□□ 1.93
SHKBP1-222ENST00000600320 KIF24Q5T7B8 1368 aa27.09■■□□□ 1.93
SHKBP1-222ENST00000600320 NRAPQ86VF7 1730 aa27.08■■□□□ 1.93
SHKBP1-222ENST00000600320 ANP32CO43423 234 aa27.08■■□□□ 1.93
SHKBP1-222ENST00000600320 CDK12Q9NYV4 1490 aaPredicted RBP27.07■■□□□ 1.92
SHKBP1-222ENST00000600320 NWD2Q9ULI1 1742 aa27.07■■□□□ 1.92
SHKBP1-222ENST00000600320 COL5A2P05997 1499 aaPredicted RBP27.06■■□□□ 1.92
SHKBP1-222ENST00000600320 BCL9LQ86UU0 1499 aa27.06■■□□□ 1.92
SHKBP1-222ENST00000600320 MYBBP1AQ9BQG0 1328 aaKnown RBP27.06■■□□□ 1.92
SHKBP1-222ENST00000600320 BLMP54132 1417 aaPredicted RBP27.06■■□□□ 1.92
SHKBP1-222ENST00000600320 INSRP06213 1382 aa27.05■■□□□ 1.92
SHKBP1-222ENST00000600320 LTV1Q96GA3 475 aaPredicted RBP27.04■■□□□ 1.92
SHKBP1-222ENST00000600320 USP21Q9UK80 565 aa27.04■■□□□ 1.92
SHKBP1-222ENST00000600320 STRN4Q9NRL3 753 aa27.03■■□□□ 1.92
SHKBP1-222ENST00000600320 UNC5CLQ8IV45 518 aa27.02■■□□□ 1.92
SHKBP1-222ENST00000600320 ANKRD24Q8TF21 1146 aa27.02■■□□□ 1.92
SHKBP1-222ENST00000600320 COL3A1P02461 1466 aaPredicted RBP27.01■■□□□ 1.91
SHKBP1-222ENST00000600320 ERBB3P21860 1342 aa27.01■■□□□ 1.91
SHKBP1-222ENST00000600320 TNKS1BP1Q9C0C2 1729 aaKnown RBP27■■□□□ 1.91
SHKBP1-222ENST00000600320 EVA1CP58658 441 aa27■■□□□ 1.91
SHKBP1-222ENST00000600320 LARP1Q6PKG0 1096 aaKnown RBP27■■□□□ 1.91
SHKBP1-222ENST00000600320 RGS17Q9UGC6 210 aaPredicted RBP26.99■■□□□ 1.91
SHKBP1-222ENST00000600320 EIF4A2Q14240 407 aaKnown RBP26.98■■□□□ 1.91
SHKBP1-222ENST00000600320 WDR17Q8IZU2 1322 aa26.97■■□□□ 1.91
SHKBP1-222ENST00000600320 CSB-PGBD3P0DP91 1061 aa26.97■■□□□ 1.91
SHKBP1-222ENST00000600320 ATRNO75882 1429 aa26.96■■□□□ 1.91
SHKBP1-222ENST00000600320 IL13P35225 146 aa26.95■■□□□ 1.9
SHKBP1-222ENST00000600320 RGPD2P0DJD1 1756 aa26.94■■□□□ 1.9
SHKBP1-222ENST00000600320 VPS72Q15906 364 aa26.94■■□□□ 1.9
SHKBP1-222ENST00000600320 CCDC184Q52MB2 194 aa26.94■■□□□ 1.9
SHKBP1-222ENST00000600320 CFAP53Q96M91 514 aa26.94■■□□□ 1.9
SHKBP1-222ENST00000600320 ZNF772Q68DY9 489 aaPredicted RBP26.93■■□□□ 1.9
SHKBP1-222ENST00000600320 TOM1L2Q6ZVM7 507 aa26.93■■□□□ 1.9
SHKBP1-222ENST00000600320 CRB1P82279 1406 aa26.92■■□□□ 1.9
SHKBP1-222ENST00000600320 TRPC5Q9UL62 973 aaPredicted RBP26.92■■□□□ 1.9
SHKBP1-222ENST00000600320 DIAPH1O60610 1272 aaKnown RBP26.91■■□□□ 1.9
SHKBP1-222ENST00000600320 NBPF6Q5VWK0 638 aa26.91■■□□□ 1.9
SHKBP1-222ENST00000600320 NBPF4Q96M43 638 aa26.91■■□□□ 1.9
SHKBP1-222ENST00000600320 NLRP2Q9NX02 1062 aa26.91■■□□□ 1.9
SHKBP1-222ENST00000600320 FAM208AQ9UK61 1670 aaKnown RBP26.91■■□□□ 1.9
SHKBP1-222ENST00000600320 SPATA31A5Q5VU36 1347 aa26.9■■□□□ 1.9
SHKBP1-222ENST00000600320 SPATA31A7Q8IWB4 1347 aa26.9■■□□□ 1.9
SHKBP1-222ENST00000600320 EYA1Q99502 592 aa26.9■■□□□ 1.9
SHKBP1-222ENST00000600320 QTRT2Q9H974 415 aaKnown RBP26.9■■□□□ 1.9
SHKBP1-222ENST00000600320 CCDC9Q9Y3X0 531 aaKnown RBP26.9■■□□□ 1.9
SHKBP1-222ENST00000600320 SPATA31A1Q5TZJ5 1347 aa26.9■■□□□ 1.9
SHKBP1-222ENST00000600320 MIER1Q8N108 512 aa26.89■■□□□ 1.9
SHKBP1-222ENST00000600320 USHBP1Q8N6Y0 703 aa26.89■■□□□ 1.9
SHKBP1-222ENST00000600320 CARD10Q9BWT7 1032 aa26.89■■□□□ 1.9
SHKBP1-222ENST00000600320 GLI3P10071 1580 aa26.88■■□□□ 1.89
SHKBP1-222ENST00000600320 RGPD1P0DJD0 1748 aa26.88■■□□□ 1.89
SHKBP1-222ENST00000600320 POTEAQ6S8J7 498 aa26.88■■□□□ 1.89
SHKBP1-222ENST00000600320 USP35Q9P2H5 1018 aa26.88■■□□□ 1.89
SHKBP1-222ENST00000600320 GJD4Q96KN9 370 aaPredicted RBP26.86■■□□□ 1.89
SHKBP1-222ENST00000600320 IGSF1Q8N6C5 1336 aa26.86■■□□□ 1.89
SHKBP1-222ENST00000600320 NCAPD2Q15021 1401 aa26.85■■□□□ 1.89
SHKBP1-222ENST00000600320 U2SURPO15042 1029 aaKnown RBP26.83■■□□□ 1.89
SHKBP1-222ENST00000600320 TCP11L2Q8N4U5 519 aa26.83■■□□□ 1.89
SHKBP1-222ENST00000600320 AEBP1Q8IUX7 1158 aa26.82■■□□□ 1.88
SHKBP1-222ENST00000600320 MRS2Q9HD23 443 aa26.81■■□□□ 1.88
SHKBP1-222ENST00000600320 NUDCQ9Y266 331 aa26.8■■□□□ 1.88
SHKBP1-222ENST00000600320 HMOX1P09601 288 aa26.79■■□□□ 1.88
SHKBP1-222ENST00000600320 RBM6P78332 1123 aaKnown RBP26.79■■□□□ 1.88
SHKBP1-222ENST00000600320 SULT6B1Q6IMI4 303 aa26.79■■□□□ 1.88
SHKBP1-222ENST00000600320 THRAP3Q9Y2W1 955 aaKnown RBP26.79■■□□□ 1.88
SHKBP1-222ENST00000600320 DISP2A7MBM2 1401 aa26.79■■□□□ 1.88
SHKBP1-222ENST00000600320 WNK3Q9BYP7 1800 aa26.79■■□□□ 1.88
SHKBP1-222ENST00000600320 FAM98CQ17RN3 349 aaKnown RBP26.78■■□□□ 1.88
SHKBP1-222ENST00000600320 BARGINQ6ZT62 677 aa26.78■■□□□ 1.88
SHKBP1-222ENST00000600320 MEGF6O75095 1541 aa26.77■■□□□ 1.88
SHKBP1-222ENST00000600320 U2AF1L5P0DN76 240 aaPredicted RBP26.77■■□□□ 1.88
SHKBP1-222ENST00000600320 U2AF1Q01081 240 aaKnown RBP eCLIP26.77■■□□□ 1.88
SHKBP1-222ENST00000600320 KDRP35968 1356 aa26.76■■□□□ 1.87
SHKBP1-222ENST00000600320 CCER2I3L3R5 266 aa26.76■■□□□ 1.87
SHKBP1-222ENST00000600320 RXRBP28702 533 aa26.75■■□□□ 1.87
SHKBP1-222ENST00000600320 THSD7AQ9UPZ6 1657 aa26.74■■□□□ 1.87
SHKBP1-222ENST00000600320 IL2RBP14784 551 aa26.74■■□□□ 1.87
SHKBP1-222ENST00000600320 ONECUT3O60422 494 aaPredicted RBP26.73■■□□□ 1.87
SHKBP1-222ENST00000600320 PNISRQ8TF01 805 aaKnown RBP26.73■■□□□ 1.87
SHKBP1-222ENST00000600320 RSPH6AQ9H0K4 717 aa26.72■■□□□ 1.87
SHKBP1-222ENST00000600320 RAPGEF4Q8WZA2 1011 aa26.71■■□□□ 1.87
SHKBP1-222ENST00000600320 TATP17735 454 aaPredicted RBP26.7■■□□□ 1.86
SHKBP1-222ENST00000600320 WDR43Q15061 677 aaKnown RBP eCLIP26.7■■□□□ 1.86
SHKBP1-222ENST00000600320 OVOS2A0A0G2JMS6 1433 aa26.69■■□□□ 1.86
SHKBP1-222ENST00000600320 RGS12O14924 1447 aa26.69■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms