RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 SPATA31A5Q5VU36 1347 aa26.99■■□□□ 1.91
SHKBP1-221ENST00000599833 SPATA31A7Q8IWB4 1347 aa26.99■■□□□ 1.91
SHKBP1-221ENST00000599833 FBLN1P23142 703 aa26.99■■□□□ 1.91
SHKBP1-221ENST00000599833 COG3Q96JB2 828 aa26.98■■□□□ 1.91
SHKBP1-221ENST00000599833 THSD7AQ9UPZ6 1657 aa26.98■■□□□ 1.91
SHKBP1-221ENST00000599833 ONECUT3O60422 494 aaPredicted RBP26.97■■□□□ 1.91
SHKBP1-221ENST00000599833 BRWD3Q6RI45 1802 aa26.97■■□□□ 1.91
SHKBP1-221ENST00000599833 PEAK1Q9H792 1746 aa26.96■■□□□ 1.91
SHKBP1-221ENST00000599833 SPATA31A1Q5TZJ5 1347 aa26.95■■□□□ 1.91
SHKBP1-221ENST00000599833 LARP1Q6PKG0 1096 aaKnown RBP26.95■■□□□ 1.9
SHKBP1-221ENST00000599833 PER1O15534 1290 aaPredicted RBP26.94■■□□□ 1.9
SHKBP1-221ENST00000599833 CGNL1Q0VF96 1302 aa26.93■■□□□ 1.9
SHKBP1-221ENST00000599833 STRN4Q9NRL3 753 aa26.93■■□□□ 1.9
SHKBP1-221ENST00000599833 MAP3K19Q56UN5 1328 aa26.92■■□□□ 1.9
SHKBP1-221ENST00000599833 ZBTB7CA1YPR0 619 aa26.92■■□□□ 1.9
SHKBP1-221ENST00000599833 SOCS7O14512 581 aa26.92■■□□□ 1.9
SHKBP1-221ENST00000599833 WNK3Q9BYP7 1800 aa26.91■■□□□ 1.9
SHKBP1-221ENST00000599833 CRB1P82279 1406 aa26.9■■□□□ 1.9
SHKBP1-221ENST00000599833 AMER1Q5JTC6 1135 aaPredicted RBP26.89■■□□□ 1.9
SHKBP1-221ENST00000599833 WDR17Q8IZU2 1322 aa26.89■■□□□ 1.89
SHKBP1-221ENST00000599833 MAP2P11137 1827 aaKnown RBP26.88■■□□□ 1.89
SHKBP1-221ENST00000599833 BLMP54132 1417 aaPredicted RBP26.88■■□□□ 1.89
SHKBP1-221ENST00000599833 NSD2O96028 1365 aa26.87■■□□□ 1.89
SHKBP1-221ENST00000599833 ZEB1P37275 1124 aaPredicted RBP26.87■■□□□ 1.89
SHKBP1-221ENST00000599833 IP6K1Q92551 441 aa26.87■■□□□ 1.89
SHKBP1-221ENST00000599833 ERBB3P21860 1342 aa26.87■■□□□ 1.89
SHKBP1-221ENST00000599833 RRS1Q15050 365 aaKnown RBP26.86■■□□□ 1.89
SHKBP1-221ENST00000599833 CCDC9Q9Y3X0 531 aaKnown RBP26.86■■□□□ 1.89
SHKBP1-221ENST00000599833 RTL1A6NKG5 1358 aa26.85■■□□□ 1.89
SHKBP1-221ENST00000599833 EVA1CP58658 441 aa26.85■■□□□ 1.89
SHKBP1-221ENST00000599833 FAM98CQ17RN3 349 aaKnown RBP26.85■■□□□ 1.89
SHKBP1-221ENST00000599833 HOXC9P31274 260 aa26.84■■□□□ 1.89
SHKBP1-221ENST00000599833 SEPT12Q8IYM1 358 aa26.84■■□□□ 1.89
SHKBP1-221ENST00000599833 PARP4Q9UKK3 1724 aaKnown RBP26.84■■□□□ 1.89
SHKBP1-221ENST00000599833 RGPD2P0DJD1 1756 aa26.84■■□□□ 1.89
SHKBP1-221ENST00000599833 FAM208AQ9UK61 1670 aaKnown RBP26.83■■□□□ 1.89
SHKBP1-221ENST00000599833 BARGINQ6ZT62 677 aa26.83■■□□□ 1.89
SHKBP1-221ENST00000599833 DISP2A7MBM2 1401 aa26.82■■□□□ 1.88
SHKBP1-221ENST00000599833 KIF24Q5T7B8 1368 aa26.81■■□□□ 1.88
SHKBP1-221ENST00000599833 SMG6Q86US8 1419 aaKnown RBP26.81■■□□□ 1.88
SHKBP1-221ENST00000599833 TCP11L2Q8N4U5 519 aa26.8■■□□□ 1.88
SHKBP1-221ENST00000599833 ANKRD24Q8TF21 1146 aa26.8■■□□□ 1.88
SHKBP1-221ENST00000599833 THRAP3Q9Y2W1 955 aaKnown RBP26.8■■□□□ 1.88
SHKBP1-221ENST00000599833 KNSTRNQ9Y448 316 aa26.8■■□□□ 1.88
SHKBP1-221ENST00000599833 EMILIN1Q9Y6C2 1016 aa26.8■■□□□ 1.88
SHKBP1-221ENST00000599833 CARD10Q9BWT7 1032 aa26.79■■□□□ 1.88
SHKBP1-221ENST00000599833 USP35Q9P2H5 1018 aa26.79■■□□□ 1.88
SHKBP1-221ENST00000599833 LRRC37A3O60309 1634 aa26.79■■□□□ 1.88
SHKBP1-221ENST00000599833 NPC1L1Q9UHC9 1359 aa26.78■■□□□ 1.88
SHKBP1-221ENST00000599833 INSRP06213 1382 aa26.77■■□□□ 1.88
SHKBP1-221ENST00000599833 TOM1L2Q6ZVM7 507 aa26.77■■□□□ 1.88
SHKBP1-221ENST00000599833 POLKQ9UBT6 870 aa26.77■■□□□ 1.88
SHKBP1-221ENST00000599833 FLT4P35916 1363 aa26.76■■□□□ 1.87
SHKBP1-221ENST00000599833 AMPHP49418 695 aa26.75■■□□□ 1.87
SHKBP1-221ENST00000599833 HSP90AB2PQ58FF8 381 aa26.75■■□□□ 1.87
SHKBP1-221ENST00000599833 UPF1Q92900 1129 aaKnown RBP eCLIP26.72■■□□□ 1.87
SHKBP1-221ENST00000599833 CSB-PGBD3P0DP91 1061 aa26.71■■□□□ 1.87
SHKBP1-221ENST00000599833 TNNT2P45379 298 aaPredicted RBP26.71■■□□□ 1.87
SHKBP1-221ENST00000599833 KRT27Q7Z3Y8 459 aa26.71■■□□□ 1.87
SHKBP1-221ENST00000599833 NCAPD2Q15021 1401 aa26.7■■□□□ 1.86
SHKBP1-221ENST00000599833 MORC1Q86VD1 984 aa26.69■■□□□ 1.86
SHKBP1-221ENST00000599833 LTV1Q96GA3 475 aaPredicted RBP26.69■■□□□ 1.86
SHKBP1-221ENST00000599833 NLRP2Q9NX02 1062 aa26.67■■□□□ 1.86
SHKBP1-221ENST00000599833 CC2D1BQ5T0F9 858 aaKnown RBP26.66■■□□□ 1.86
SHKBP1-221ENST00000599833 NBPF6Q5VWK0 638 aa26.66■■□□□ 1.86
SHKBP1-221ENST00000599833 NBPF4Q96M43 638 aa26.66■■□□□ 1.86
SHKBP1-221ENST00000599833 SHANK3Q9BYB0 1731 aa26.65■■□□□ 1.86
SHKBP1-221ENST00000599833 A0A0G2JS52 829 aa26.64■■□□□ 1.86
SHKBP1-221ENST00000599833 MYT1Q01538 1121 aa26.64■■□□□ 1.86
SHKBP1-221ENST00000599833 FAM182BQ5T319 152 aa26.64■■□□□ 1.86
SHKBP1-221ENST00000599833 CDCA7Q9BWT1 371 aaPredicted RBP26.63■■□□□ 1.85
SHKBP1-221ENST00000599833 MEGF6O75095 1541 aa26.63■■□□□ 1.85
SHKBP1-221ENST00000599833 TNS2Q63HR2 1409 aa26.63■■□□□ 1.85
SHKBP1-221ENST00000599833 RGPD1P0DJD0 1748 aa26.62■■□□□ 1.85
SHKBP1-221ENST00000599833 PPM1GO15355 546 aaPredicted RBP26.61■■□□□ 1.85
SHKBP1-221ENST00000599833 SBF2Q86WG5 1849 aa26.6■■□□□ 1.85
SHKBP1-221ENST00000599833 TNS1Q9HBL0 1735 aaKnown RBP26.6■■□□□ 1.85
SHKBP1-221ENST00000599833 EIF4A2Q14240 407 aaKnown RBP26.6■■□□□ 1.85
SHKBP1-221ENST00000599833 IL2RBP14784 551 aa26.59■■□□□ 1.85
SHKBP1-221ENST00000599833 COL3A1P02461 1466 aaPredicted RBP26.58■■□□□ 1.85
SHKBP1-221ENST00000599833 DDB1Q16531 1140 aa26.58■■□□□ 1.85
SHKBP1-221ENST00000599833 USHBP1Q8N6Y0 703 aa26.58■■□□□ 1.85
SHKBP1-221ENST00000599833 MARCH10Q8NA82 808 aaPredicted RBP26.57■■□□□ 1.84
SHKBP1-221ENST00000599833 OVOS2A0A0G2JMS6 1433 aa26.56■■□□□ 1.84
SHKBP1-221ENST00000599833 EYA1Q99502 592 aa26.56■■□□□ 1.84
SHKBP1-221ENST00000599833 BCL9O00512 1426 aa26.56■■□□□ 1.84
SHKBP1-221ENST00000599833 MTHFSP49914 203 aa26.55■■□□□ 1.84
SHKBP1-221ENST00000599833 PKD1L3Q7Z443 1732 aa26.54■■□□□ 1.84
SHKBP1-221ENST00000599833 DDX10Q13206 875 aaKnown RBP26.54■■□□□ 1.84
SHKBP1-221ENST00000599833 PDE3BQ13370 1112 aa26.54■■□□□ 1.84
SHKBP1-221ENST00000599833 IGSF1Q8N6C5 1336 aa26.53■■□□□ 1.84
SHKBP1-221ENST00000599833 IL13P35225 146 aa26.52■■□□□ 1.84
SHKBP1-221ENST00000599833 PARD3Q8TEW0 1356 aa26.52■■□□□ 1.84
SHKBP1-221ENST00000599833 EXOC5O00471 708 aa26.51■■□□□ 1.83
SHKBP1-221ENST00000599833 CNGB1Q14028 1251 aaPredicted RBP26.51■■□□□ 1.83
SHKBP1-221ENST00000599833 FAM196AQ6ZSG2 479 aa26.5■■□□□ 1.83
SHKBP1-221ENST00000599833 CCDC125Q86Z20 511 aa26.48■■□□□ 1.83
SHKBP1-221ENST00000599833 PPP2R1AP30153 589 aa26.47■■□□□ 1.83
SHKBP1-221ENST00000599833 KDRP35968 1356 aa26.46■■□□□ 1.83
SHKBP1-221ENST00000599833 NHSQ6T4R5 1651 aa26.45■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms