RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 CC2D1BQ5T0F9 858 aaKnown RBP22.49■■□□□ 1.19
SHKBP1-219ENST00000599575 QTRT2Q9H974 415 aaKnown RBP22.49■■□□□ 1.19
SHKBP1-219ENST00000599575 FLT4P35916 1363 aa22.49■■□□□ 1.19
SHKBP1-219ENST00000599575 CAMTA1Q9Y6Y1 1673 aa22.49■■□□□ 1.19
SHKBP1-219ENST00000599575 ATRNO75882 1429 aa22.48■■□□□ 1.19
SHKBP1-219ENST00000599575 ZBTB7CA1YPR0 619 aa22.48■■□□□ 1.19
SHKBP1-219ENST00000599575 COL5A2P05997 1499 aaPredicted RBP22.47■■□□□ 1.19
SHKBP1-219ENST00000599575 HOXC9P31274 260 aa22.47■■□□□ 1.19
SHKBP1-219ENST00000599575 POLKQ9UBT6 870 aa22.47■■□□□ 1.19
SHKBP1-219ENST00000599575 AXIN2Q9Y2T1 843 aa22.47■■□□□ 1.19
SHKBP1-219ENST00000599575 COL18A1P39060 1754 aa22.46■■□□□ 1.19
SHKBP1-219ENST00000599575 RBM6P78332 1123 aaKnown RBP22.46■■□□□ 1.19
SHKBP1-219ENST00000599575 RRS1Q15050 365 aaKnown RBP22.46■■□□□ 1.19
SHKBP1-219ENST00000599575 WDR17Q8IZU2 1322 aa22.46■■□□□ 1.19
SHKBP1-219ENST00000599575 INSRP06213 1382 aa22.46■■□□□ 1.19
SHKBP1-219ENST00000599575 SMG6Q86US8 1419 aaKnown RBP22.46■■□□□ 1.19
SHKBP1-219ENST00000599575 GJD4Q96KN9 370 aaPredicted RBP22.45■■□□□ 1.18
SHKBP1-219ENST00000599575 ERBB3P21860 1342 aa22.44■■□□□ 1.18
SHKBP1-219ENST00000599575 TNNT2P45379 298 aaPredicted RBP22.44■■□□□ 1.18
SHKBP1-219ENST00000599575 NRAPQ86VF7 1730 aa22.43■■□□□ 1.18
SHKBP1-219ENST00000599575 FBLN1P23142 703 aa22.43■■□□□ 1.18
SHKBP1-219ENST00000599575 RXRBP28702 533 aa22.43■■□□□ 1.18
SHKBP1-219ENST00000599575 RALBP1Q15311 655 aa22.43■■□□□ 1.18
SHKBP1-219ENST00000599575 STRN4Q9NRL3 753 aa22.43■■□□□ 1.18
SHKBP1-219ENST00000599575 THRAP3Q9Y2W1 955 aaKnown RBP22.43■■□□□ 1.18
SHKBP1-219ENST00000599575 LTN1O94822 1766 aa22.43■■□□□ 1.18
SHKBP1-219ENST00000599575 CRB1P82279 1406 aa22.42■■□□□ 1.18
SHKBP1-219ENST00000599575 SPATA31A5Q5VU36 1347 aa22.42■■□□□ 1.18
SHKBP1-219ENST00000599575 SPATA31A7Q8IWB4 1347 aa22.42■■□□□ 1.18
SHKBP1-219ENST00000599575 POTEAQ6S8J7 498 aa22.42■■□□□ 1.18
SHKBP1-219ENST00000599575 EMILIN1Q9Y6C2 1016 aa22.42■■□□□ 1.18
SHKBP1-219ENST00000599575 PARD3Q8TEW0 1356 aa22.41■■□□□ 1.18
SHKBP1-219ENST00000599575 ANKRD24Q8TF21 1146 aa22.41■■□□□ 1.18
SHKBP1-219ENST00000599575 SPATA31A1Q5TZJ5 1347 aa22.4■■□□□ 1.18
SHKBP1-219ENST00000599575 CSB-PGBD3P0DP91 1061 aa22.4■■□□□ 1.18
SHKBP1-219ENST00000599575 CARD10Q9BWT7 1032 aa22.4■■□□□ 1.18
SHKBP1-219ENST00000599575 CCDC9Q9Y3X0 531 aaKnown RBP22.4■■□□□ 1.18
SHKBP1-219ENST00000599575 CDK12Q9NYV4 1490 aaPredicted RBP22.4■■□□□ 1.18
SHKBP1-219ENST00000599575 PPM1GO15355 546 aaPredicted RBP22.39■■□□□ 1.17
SHKBP1-219ENST00000599575 ONECUT3O60422 494 aaPredicted RBP22.39■■□□□ 1.17
SHKBP1-219ENST00000599575 LARP1Q6PKG0 1096 aaKnown RBP22.39■■□□□ 1.17
SHKBP1-219ENST00000599575 TOM1L2Q6ZVM7 507 aa22.39■■□□□ 1.17
SHKBP1-219ENST00000599575 HSP90AB2PQ58FF8 381 aa22.38■■□□□ 1.17
SHKBP1-219ENST00000599575 MTHFSP49914 203 aa22.37■■□□□ 1.17
SHKBP1-219ENST00000599575 BARGINQ6ZT62 677 aa22.37■■□□□ 1.17
SHKBP1-219ENST00000599575 TCP11L2Q8N4U5 519 aa22.37■■□□□ 1.17
SHKBP1-219ENST00000599575 CDCA7Q9BWT1 371 aaPredicted RBP22.37■■□□□ 1.17
SHKBP1-219ENST00000599575 FAM208AQ9UK61 1670 aaKnown RBP22.34■■□□□ 1.17
SHKBP1-219ENST00000599575 PPP2R1AP30153 589 aa22.34■■□□□ 1.17
SHKBP1-219ENST00000599575 NLRP2Q9NX02 1062 aa22.34■■□□□ 1.17
SHKBP1-219ENST00000599575 PEAK1Q9H792 1746 aa22.34■■□□□ 1.17
SHKBP1-219ENST00000599575 MAP2P11137 1827 aaKnown RBP22.34■■□□□ 1.17
SHKBP1-219ENST00000599575 CFAP53Q96M91 514 aa22.33■■□□□ 1.17
SHKBP1-219ENST00000599575 CNGB1Q14028 1251 aaPredicted RBP22.32■■□□□ 1.16
SHKBP1-219ENST00000599575 GLI3P10071 1580 aa22.32■■□□□ 1.16
SHKBP1-219ENST00000599575 LTV1Q96GA3 475 aaPredicted RBP22.31■■□□□ 1.16
SHKBP1-219ENST00000599575 PRKRIP1Q9H875 184 aaPredicted RBP22.31■■□□□ 1.16
SHKBP1-219ENST00000599575 EIF4A2Q14240 407 aaKnown RBP22.3■■□□□ 1.16
SHKBP1-219ENST00000599575 MYBBP1AQ9BQG0 1328 aaKnown RBP22.3■■□□□ 1.16
SHKBP1-219ENST00000599575 PLEKHG2Q9H7P9 1386 aa22.29■■□□□ 1.16
SHKBP1-219ENST00000599575 USP35Q9P2H5 1018 aa22.29■■□□□ 1.16
SHKBP1-219ENST00000599575 RGPD5Q99666 1765 aa22.28■■□□□ 1.16
SHKBP1-219ENST00000599575 FAM98CQ17RN3 349 aaKnown RBP22.28■■□□□ 1.16
SHKBP1-219ENST00000599575 DIAPH1O60610 1272 aaKnown RBP22.27■■□□□ 1.16
SHKBP1-219ENST00000599575 NCAPD2Q15021 1401 aa22.27■■□□□ 1.16
SHKBP1-219ENST00000599575 NBPF6Q5VWK0 638 aa22.27■■□□□ 1.16
SHKBP1-219ENST00000599575 NBPF4Q96M43 638 aa22.27■■□□□ 1.16
SHKBP1-219ENST00000599575 ANP32CO43423 234 aa22.26■■□□□ 1.15
SHKBP1-219ENST00000599575 IL13P35225 146 aa22.26■■□□□ 1.15
SHKBP1-219ENST00000599575 SEPT12Q8IYM1 358 aa22.26■■□□□ 1.15
SHKBP1-219ENST00000599575 IL2RBP14784 551 aa22.25■■□□□ 1.15
SHKBP1-219ENST00000599575 IGSF1Q8N6C5 1336 aa22.25■■□□□ 1.15
SHKBP1-219ENST00000599575 DISP2A7MBM2 1401 aa22.24■■□□□ 1.15
SHKBP1-219ENST00000599575 RGS12O14924 1447 aa22.24■■□□□ 1.15
SHKBP1-219ENST00000599575 EYA1Q99502 592 aa22.24■■□□□ 1.15
SHKBP1-219ENST00000599575 NUDCQ9Y266 331 aa22.24■■□□□ 1.15
SHKBP1-219ENST00000599575 RAPGEF4Q8WZA2 1011 aa22.22■■□□□ 1.15
SHKBP1-219ENST00000599575 THSD7AQ9UPZ6 1657 aa22.22■■□□□ 1.15
SHKBP1-219ENST00000599575 COL3A1P02461 1466 aaPredicted RBP22.22■■□□□ 1.15
SHKBP1-219ENST00000599575 A0A0G2JS52 829 aa22.21■■□□□ 1.15
SHKBP1-219ENST00000599575 MYT1Q01538 1121 aa22.21■■□□□ 1.15
SHKBP1-219ENST00000599575 EXOC5O00471 708 aa22.2■■□□□ 1.14
SHKBP1-219ENST00000599575 DDB1Q16531 1140 aa22.2■■□□□ 1.14
SHKBP1-219ENST00000599575 KDRP35968 1356 aa22.2■■□□□ 1.14
SHKBP1-219ENST00000599575 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.19■■□□□ 1.14
SHKBP1-219ENST00000599575 TATP17735 454 aaPredicted RBP22.18■■□□□ 1.14
SHKBP1-219ENST00000599575 PDE3BQ13370 1112 aa22.18■■□□□ 1.14
SHKBP1-219ENST00000599575 KRT27Q7Z3Y8 459 aa22.18■■□□□ 1.14
SHKBP1-219ENST00000599575 PARP4Q9UKK3 1724 aaKnown RBP22.17■■□□□ 1.14
SHKBP1-219ENST00000599575 OVOS2A0A0G2JMS6 1433 aa22.16■■□□□ 1.14
SHKBP1-219ENST00000599575 TNS2Q63HR2 1409 aa22.15■■□□□ 1.14
SHKBP1-219ENST00000599575 USHBP1Q8N6Y0 703 aa22.15■■□□□ 1.14
SHKBP1-219ENST00000599575 RGPD1P0DJD0 1748 aa22.14■■□□□ 1.14
SHKBP1-219ENST00000599575 SULT6B1Q6IMI4 303 aa22.14■■□□□ 1.13
SHKBP1-219ENST00000599575 U2SURPO15042 1029 aaKnown RBP22.13■■□□□ 1.13
SHKBP1-219ENST00000599575 AMOTQ4VCS5 1084 aa22.13■■□□□ 1.13
SHKBP1-219ENST00000599575 ZCRB1Q8TBF4 217 aaKnown RBP22.13■■□□□ 1.13
SHKBP1-219ENST00000599575 SPG7Q9UQ90 795 aa22.13■■□□□ 1.13
SHKBP1-219ENST00000599575 WNK3Q9BYP7 1800 aa22.13■■□□□ 1.13
SHKBP1-219ENST00000599575 MEGF6O75095 1541 aa22.12■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms