RNA–Protein interactions for RNA: ENST00000567720.5

COMMD4-220, Transcript of COMM domain containing 4, humanhuman

TSL 4

Gene COMMD4, Length 544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-220ENST00000567720 FAM208AQ9UK61 1670 aaKnown RBP23.75■■□□□ 1.39
COMMD4-220ENST00000567720 CGNL1Q0VF96 1302 aa23.75■■□□□ 1.39
COMMD4-220ENST00000567720 ZBTB7CA1YPR0 619 aa23.74■■□□□ 1.39
COMMD4-220ENST00000567720 THSD7AQ9UPZ6 1657 aa23.73■■□□□ 1.39
COMMD4-220ENST00000567720 RGPD2P0DJD1 1756 aa23.71■■□□□ 1.39
COMMD4-220ENST00000567720 NSD2O96028 1365 aa23.71■■□□□ 1.39
COMMD4-220ENST00000567720 VPS72Q15906 364 aa23.71■■□□□ 1.39
COMMD4-220ENST00000567720 RBM6P78332 1123 aaKnown RBP23.7■■□□□ 1.38
COMMD4-220ENST00000567720 RXRBP28702 533 aa23.69■■□□□ 1.38
COMMD4-220ENST00000567720 FBLN1P23142 703 aa23.68■■□□□ 1.38
COMMD4-220ENST00000567720 GJD4Q96KN9 370 aaPredicted RBP23.68■■□□□ 1.38
COMMD4-220ENST00000567720 AXIN2Q9Y2T1 843 aa23.68■■□□□ 1.38
COMMD4-220ENST00000567720 MAP3K19Q56UN5 1328 aa23.67■■□□□ 1.38
COMMD4-220ENST00000567720 STRN4Q9NRL3 753 aa23.67■■□□□ 1.38
COMMD4-220ENST00000567720 BLMP54132 1417 aaPredicted RBP23.67■■□□□ 1.38
COMMD4-220ENST00000567720 RTL1A6NKG5 1358 aa23.66■■□□□ 1.38
COMMD4-220ENST00000567720 PARP4Q9UKK3 1724 aaKnown RBP23.66■■□□□ 1.38
COMMD4-220ENST00000567720 SPATA31A5Q5VU36 1347 aa23.65■■□□□ 1.38
COMMD4-220ENST00000567720 SPATA31A7Q8IWB4 1347 aa23.65■■□□□ 1.38
COMMD4-220ENST00000567720 CRB1P82279 1406 aa23.65■■□□□ 1.38
COMMD4-220ENST00000567720 EP400Q96L91 3159 aa23.64■■□□□ 1.38
COMMD4-220ENST00000567720 LRRC37A3O60309 1634 aa23.64■■□□□ 1.38
COMMD4-220ENST00000567720 PER1O15534 1290 aaPredicted RBP23.64■■□□□ 1.37
COMMD4-220ENST00000567720 AMER1Q5JTC6 1135 aaPredicted RBP23.64■■□□□ 1.37
COMMD4-220ENST00000567720 CCDC9Q9Y3X0 531 aaKnown RBP23.64■■□□□ 1.37
COMMD4-220ENST00000567720 KNSTRNQ9Y448 316 aa23.64■■□□□ 1.37
COMMD4-220ENST00000567720 RRS1Q15050 365 aaKnown RBP23.63■■□□□ 1.37
COMMD4-220ENST00000567720 LARP1Q6PKG0 1096 aaKnown RBP23.63■■□□□ 1.37
COMMD4-220ENST00000567720 SPATA31A1Q5TZJ5 1347 aa23.62■■□□□ 1.37
COMMD4-220ENST00000567720 SMG6Q86US8 1419 aaKnown RBP23.62■■□□□ 1.37
COMMD4-220ENST00000567720 ERBB3P21860 1342 aa23.61■■□□□ 1.37
COMMD4-220ENST00000567720 WDR17Q8IZU2 1322 aa23.61■■□□□ 1.37
COMMD4-220ENST00000567720 HOXC9P31274 260 aa23.59■■□□□ 1.37
COMMD4-220ENST00000567720 EVA1CP58658 441 aa23.59■■□□□ 1.37
COMMD4-220ENST00000567720 FLT4P35916 1363 aa23.59■■□□□ 1.37
COMMD4-220ENST00000567720 KIF24Q5T7B8 1368 aa23.59■■□□□ 1.37
COMMD4-220ENST00000567720 NPC1L1Q9UHC9 1359 aa23.58■■□□□ 1.37
COMMD4-220ENST00000567720 IP6K1Q92551 441 aa23.58■■□□□ 1.37
COMMD4-220ENST00000567720 EMILIN1Q9Y6C2 1016 aa23.58■■□□□ 1.37
COMMD4-220ENST00000567720 FAM98CQ17RN3 349 aaKnown RBP23.57■■□□□ 1.36
COMMD4-220ENST00000567720 TNNT2P45379 298 aaPredicted RBP23.55■■□□□ 1.36
COMMD4-220ENST00000567720 AMPHP49418 695 aa23.55■■□□□ 1.36
COMMD4-220ENST00000567720 ANKRD24Q8TF21 1146 aa23.55■■□□□ 1.36
COMMD4-220ENST00000567720 USP35Q9P2H5 1018 aa23.55■■□□□ 1.36
COMMD4-220ENST00000567720 DISP2A7MBM2 1401 aa23.54■■□□□ 1.36
COMMD4-220ENST00000567720 INSRP06213 1382 aa23.53■■□□□ 1.36
COMMD4-220ENST00000567720 ONECUT3O60422 494 aaPredicted RBP23.53■■□□□ 1.36
COMMD4-220ENST00000567720 CSB-PGBD3P0DP91 1061 aa23.53■■□□□ 1.36
COMMD4-220ENST00000567720 TOM1L2Q6ZVM7 507 aa23.53■■□□□ 1.36
COMMD4-220ENST00000567720 MORC1Q86VD1 984 aa23.53■■□□□ 1.36
COMMD4-220ENST00000567720 SHANK3Q9BYB0 1731 aa23.53■■□□□ 1.36
COMMD4-220ENST00000567720 CC2D1BQ5T0F9 858 aaKnown RBP23.52■■□□□ 1.36
COMMD4-220ENST00000567720 SEPT12Q8IYM1 358 aa23.52■■□□□ 1.36
COMMD4-220ENST00000567720 TCP11L2Q8N4U5 519 aa23.52■■□□□ 1.36
COMMD4-220ENST00000567720 BARGINQ6ZT62 677 aa23.51■■□□□ 1.35
COMMD4-220ENST00000567720 POLKQ9UBT6 870 aa23.51■■□□□ 1.35
COMMD4-220ENST00000567720 RGPD1P0DJD0 1748 aa23.5■■□□□ 1.35
COMMD4-220ENST00000567720 CARD10Q9BWT7 1032 aa23.5■■□□□ 1.35
COMMD4-220ENST00000567720 HSP90AB2PQ58FF8 381 aa23.49■■□□□ 1.35
COMMD4-220ENST00000567720 LTV1Q96GA3 475 aaPredicted RBP23.49■■□□□ 1.35
COMMD4-220ENST00000567720 THRAP3Q9Y2W1 955 aaKnown RBP23.49■■□□□ 1.35
COMMD4-220ENST00000567720 A0A0G2JS52 829 aa23.48■■□□□ 1.35
COMMD4-220ENST00000567720 MYT1Q01538 1121 aa23.48■■□□□ 1.35
COMMD4-220ENST00000567720 PPM1GO15355 546 aaPredicted RBP23.46■■□□□ 1.35
COMMD4-220ENST00000567720 CNGB1Q14028 1251 aaPredicted RBP23.46■■□□□ 1.35
COMMD4-220ENST00000567720 NCAPD2Q15021 1401 aa23.46■■□□□ 1.35
COMMD4-220ENST00000567720 NLRP2Q9NX02 1062 aa23.46■■□□□ 1.35
COMMD4-220ENST00000567720 TNS2Q63HR2 1409 aa23.45■■□□□ 1.34
COMMD4-220ENST00000567720 SBF2Q86WG5 1849 aa23.45■■□□□ 1.34
COMMD4-220ENST00000567720 PKD1L3Q7Z443 1732 aa23.45■■□□□ 1.34
COMMD4-220ENST00000567720 TNS1Q9HBL0 1735 aaKnown RBP23.45■■□□□ 1.34
COMMD4-220ENST00000567720 MEGF6O75095 1541 aa23.44■■□□□ 1.34
COMMD4-220ENST00000567720 SOCS7O14512 581 aa23.44■■□□□ 1.34
COMMD4-220ENST00000567720 COL3A1P02461 1466 aaPredicted RBP23.43■■□□□ 1.34
COMMD4-220ENST00000567720 DDX10Q13206 875 aaKnown RBP23.43■■□□□ 1.34
COMMD4-220ENST00000567720 KRT27Q7Z3Y8 459 aa23.41■■□□□ 1.34
COMMD4-220ENST00000567720 NBPF6Q5VWK0 638 aa23.4■■□□□ 1.34
COMMD4-220ENST00000567720 NBPF4Q96M43 638 aa23.4■■□□□ 1.34
COMMD4-220ENST00000567720 PARD3Q8TEW0 1356 aa23.4■■□□□ 1.34
COMMD4-220ENST00000567720 USHBP1Q8N6Y0 703 aa23.39■■□□□ 1.33
COMMD4-220ENST00000567720 EIF4A2Q14240 407 aaKnown RBP23.38■■□□□ 1.33
COMMD4-220ENST00000567720 OVOS2A0A0G2JMS6 1433 aa23.38■■□□□ 1.33
COMMD4-220ENST00000567720 ZNF316A6NFI3 1004 aaPredicted RBP23.37■■□□□ 1.33
COMMD4-220ENST00000567720 CDCA7Q9BWT1 371 aaPredicted RBP23.37■■□□□ 1.33
COMMD4-220ENST00000567720 IL2RBP14784 551 aa23.36■■□□□ 1.33
COMMD4-220ENST00000567720 MTHFSP49914 203 aa23.35■■□□□ 1.33
COMMD4-220ENST00000567720 FAM182BQ5T319 152 aa23.35■■□□□ 1.33
COMMD4-220ENST00000567720 DOT1LQ8TEK3 1739 aa23.35■■□□□ 1.33
COMMD4-220ENST00000567720 DDB1Q16531 1140 aa23.34■■□□□ 1.33
COMMD4-220ENST00000567720 NHSQ6T4R5 1651 aa23.34■■□□□ 1.33
COMMD4-220ENST00000567720 IGSF1Q8N6C5 1336 aa23.33■■□□□ 1.33
COMMD4-220ENST00000567720 UPF1Q92900 1129 aaKnown RBP eCLIP23.32■■□□□ 1.32
COMMD4-220ENST00000567720 EYA1Q99502 592 aa23.32■■□□□ 1.32
COMMD4-220ENST00000567720 PPP2R1AP30153 589 aa23.31■■□□□ 1.32
COMMD4-220ENST00000567720 PDE3BQ13370 1112 aa23.31■■□□□ 1.32
COMMD4-220ENST00000567720 TOGARAM1Q9Y4F4 1720 aa23.3■■□□□ 1.32
COMMD4-220ENST00000567720 IL13P35225 146 aa23.28■■□□□ 1.32
COMMD4-220ENST00000567720 MARCH10Q8NA82 808 aaPredicted RBP23.28■■□□□ 1.32
COMMD4-220ENST00000567720 VIRMAQ69YN4 1812 aaKnown RBP23.28■■□□□ 1.32
COMMD4-220ENST00000567720 KDRP35968 1356 aa23.27■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 194 ms