RNA–Protein interactions for RNA: ENST00000565990.2

SF3B3-206, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 967 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-206ENST00000565990 HOXC9P31274 260 aa17.08■□□□□ 0.32
SF3B3-206ENST00000565990 CNGB1Q14028 1251 aaPredicted RBP17.08■□□□□ 0.32
SF3B3-206ENST00000565990 CHRNA2Q15822 529 aa17.08■□□□□ 0.32
SF3B3-206ENST00000565990 NGLY1Q96IV0 654 aa17.08■□□□□ 0.32
SF3B3-206ENST00000565990 EMILIN1Q9Y6C2 1016 aa17.08■□□□□ 0.32
SF3B3-206ENST00000565990 INSRP06213 1382 aa17.07■□□□□ 0.32
SF3B3-206ENST00000565990 MTHFSP49914 203 aa17.07■□□□□ 0.32
SF3B3-206ENST00000565990 C8orf37Q96NL8 207 aa17.07■□□□□ 0.32
SF3B3-206ENST00000565990 BCL9LQ86UU0 1499 aa17.06■□□□□ 0.32
SF3B3-206ENST00000565990 RTL1A6NKG5 1358 aa17.06■□□□□ 0.32
SF3B3-206ENST00000565990 AMPHP49418 695 aa17.06■□□□□ 0.32
SF3B3-206ENST00000565990 MEX3CQ5U5Q3 659 aaKnown RBP17.06■□□□□ 0.32
SF3B3-206ENST00000565990 BTG4Q9NY30 223 aa17.06■□□□□ 0.32
SF3B3-206ENST00000565990 PLCH1Q4KWH8 1693 aa17.06■□□□□ 0.32
SF3B3-206ENST00000565990 FLT4P35916 1363 aa17.05■□□□□ 0.32
SF3B3-206ENST00000565990 HSP90AB2PQ58FF8 381 aa17.05■□□□□ 0.32
SF3B3-206ENST00000565990 BLMP54132 1417 aaPredicted RBP17.04■□□□□ 0.32
SF3B3-206ENST00000565990 ANP32CO43423 234 aa17.04■□□□□ 0.32
SF3B3-206ENST00000565990 MYBBP1AQ9BQG0 1328 aaKnown RBP17.03■□□□□ 0.32
SF3B3-206ENST00000565990 UNC5CLQ8IV45 518 aa17.03■□□□□ 0.32
SF3B3-206ENST00000565990 NRAPQ86VF7 1730 aa17.03■□□□□ 0.32
SF3B3-206ENST00000565990 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.03■□□□□ 0.32
SF3B3-206ENST00000565990 AFF2P51816 1311 aa17.02■□□□□ 0.32
SF3B3-206ENST00000565990 COL5A2P05997 1499 aaPredicted RBP17.02■□□□□ 0.32
SF3B3-206ENST00000565990 PPM1GO15355 546 aaPredicted RBP17.02■□□□□ 0.32
SF3B3-206ENST00000565990 USP21Q9UK80 565 aa17.02■□□□□ 0.32
SF3B3-206ENST00000565990 CDK12Q9NYV4 1490 aaPredicted RBP17.01■□□□□ 0.31
SF3B3-206ENST00000565990 ZBTB7CA1YPR0 619 aa17.01■□□□□ 0.31
SF3B3-206ENST00000565990 RGS17Q9UGC6 210 aaPredicted RBP17.01■□□□□ 0.31
SF3B3-206ENST00000565990 EVA1CP58658 441 aa17■□□□□ 0.31
SF3B3-206ENST00000565990 ANKRD24Q8TF21 1146 aa17■□□□□ 0.31
SF3B3-206ENST00000565990 ERBB3P21860 1342 aa16.99■□□□□ 0.31
SF3B3-206ENST00000565990 WDR17Q8IZU2 1322 aa16.99■□□□□ 0.31
SF3B3-206ENST00000565990 IL13P35225 146 aa16.99■□□□□ 0.31
SF3B3-206ENST00000565990 ZNF772Q68DY9 489 aaPredicted RBP16.99■□□□□ 0.31
SF3B3-206ENST00000565990 EIF4A2Q14240 407 aaKnown RBP16.98■□□□□ 0.31
SF3B3-206ENST00000565990 VPS72Q15906 364 aa16.98■□□□□ 0.31
SF3B3-206ENST00000565990 LARP1Q6PKG0 1096 aaKnown RBP16.98■□□□□ 0.31
SF3B3-206ENST00000565990 RGPD2P0DJD1 1756 aa16.97■□□□□ 0.31
SF3B3-206ENST00000565990 MIER1Q8N108 512 aa16.97■□□□□ 0.31
SF3B3-206ENST00000565990 QTRT2Q9H974 415 aaKnown RBP16.97■□□□□ 0.31
SF3B3-206ENST00000565990 TRPC5Q9UL62 973 aaPredicted RBP16.97■□□□□ 0.31
SF3B3-206ENST00000565990 COL3A1P02461 1466 aaPredicted RBP16.97■□□□□ 0.31
SF3B3-206ENST00000565990 FAM208AQ9UK61 1670 aaKnown RBP16.97■□□□□ 0.31
SF3B3-206ENST00000565990 DIAPH1O60610 1272 aaKnown RBP16.96■□□□□ 0.31
SF3B3-206ENST00000565990 NBPF6Q5VWK0 638 aa16.96■□□□□ 0.31
SF3B3-206ENST00000565990 NBPF4Q96M43 638 aa16.96■□□□□ 0.31
SF3B3-206ENST00000565990 CFAP53Q96M91 514 aa16.96■□□□□ 0.31
SF3B3-206ENST00000565990 CARD10Q9BWT7 1032 aa16.96■□□□□ 0.31
SF3B3-206ENST00000565990 STRN4Q9NRL3 753 aa16.96■□□□□ 0.31
SF3B3-206ENST00000565990 ATRNO75882 1429 aa16.96■□□□□ 0.3
SF3B3-206ENST00000565990 SPATA31A5Q5VU36 1347 aa16.96■□□□□ 0.3
SF3B3-206ENST00000565990 SPATA31A7Q8IWB4 1347 aa16.96■□□□□ 0.3
SF3B3-206ENST00000565990 LTV1Q96GA3 475 aaPredicted RBP16.95■□□□□ 0.3
SF3B3-206ENST00000565990 CRB1P82279 1406 aa16.95■□□□□ 0.3
SF3B3-206ENST00000565990 SPATA31A1Q5TZJ5 1347 aa16.95■□□□□ 0.3
SF3B3-206ENST00000565990 RGPD1P0DJD0 1748 aa16.94■□□□□ 0.3
SF3B3-206ENST00000565990 ONECUT3O60422 494 aaPredicted RBP16.94■□□□□ 0.3
SF3B3-206ENST00000565990 GJD4Q96KN9 370 aaPredicted RBP16.94■□□□□ 0.3
SF3B3-206ENST00000565990 EYA1Q99502 592 aa16.94■□□□□ 0.3
SF3B3-206ENST00000565990 CSB-PGBD3P0DP91 1061 aa16.93■□□□□ 0.3
SF3B3-206ENST00000565990 TOM1L2Q6ZVM7 507 aa16.93■□□□□ 0.3
SF3B3-206ENST00000565990 THRAP3Q9Y2W1 955 aaKnown RBP16.93■□□□□ 0.3
SF3B3-206ENST00000565990 GTF3C3Q9Y5Q9 886 aa16.93■□□□□ 0.3
SF3B3-206ENST00000565990 NCAPD2Q15021 1401 aa16.93■□□□□ 0.3
SF3B3-206ENST00000565990 CCDC184Q52MB2 194 aa16.92■□□□□ 0.3
SF3B3-206ENST00000565990 NLRP2Q9NX02 1062 aa16.92■□□□□ 0.3
SF3B3-206ENST00000565990 IGSF1Q8N6C5 1336 aa16.92■□□□□ 0.3
SF3B3-206ENST00000565990 POTEAQ6S8J7 498 aa16.91■□□□□ 0.3
SF3B3-206ENST00000565990 BARGINQ6ZT62 677 aa16.91■□□□□ 0.3
SF3B3-206ENST00000565990 TCP11L2Q8N4U5 519 aa16.9■□□□□ 0.3
SF3B3-206ENST00000565990 PHF23Q9BUL5 403 aaPredicted RBP16.9■□□□□ 0.3
SF3B3-206ENST00000565990 GLI3P10071 1580 aa16.89■□□□□ 0.3
SF3B3-206ENST00000565990 CCER2I3L3R5 266 aa16.89■□□□□ 0.29
SF3B3-206ENST00000565990 RBM6P78332 1123 aaKnown RBP16.89■□□□□ 0.29
SF3B3-206ENST00000565990 NUDCQ9Y266 331 aa16.89■□□□□ 0.29
SF3B3-206ENST00000565990 KDRP35968 1356 aa16.88■□□□□ 0.29
SF3B3-206ENST00000565990 PNISRQ8TF01 805 aaKnown RBP16.87■□□□□ 0.29
SF3B3-206ENST00000565990 CDCA7Q9BWT1 371 aaPredicted RBP16.87■□□□□ 0.29
SF3B3-206ENST00000565990 USP35Q9P2H5 1018 aa16.87■□□□□ 0.29
SF3B3-206ENST00000565990 FCHSD2O94868 740 aa16.86■□□□□ 0.29
SF3B3-206ENST00000565990 RXRBP28702 533 aa16.86■□□□□ 0.29
SF3B3-206ENST00000565990 SULT6B1Q6IMI4 303 aa16.86■□□□□ 0.29
SF3B3-206ENST00000565990 CCDC9Q9Y3X0 531 aaKnown RBP16.86■□□□□ 0.29
SF3B3-206ENST00000565990 WNK3Q9BYP7 1800 aa16.86■□□□□ 0.29
SF3B3-206ENST00000565990 USHBP1Q8N6Y0 703 aa16.85■□□□□ 0.29
SF3B3-206ENST00000565990 DISP2A7MBM2 1401 aa16.85■□□□□ 0.29
SF3B3-206ENST00000565990 U2SURPO15042 1029 aaKnown RBP16.84■□□□□ 0.29
SF3B3-206ENST00000565990 IL2RBP14784 551 aa16.84■□□□□ 0.29
SF3B3-206ENST00000565990 MRS2Q9HD23 443 aa16.84■□□□□ 0.29
SF3B3-206ENST00000565990 PLEKHG2Q9H7P9 1386 aa16.84■□□□□ 0.29
SF3B3-206ENST00000565990 U2AF1L5P0DN76 240 aaPredicted RBP16.83■□□□□ 0.28
SF3B3-206ENST00000565990 U2AF1Q01081 240 aaKnown RBP eCLIP16.83■□□□□ 0.28
SF3B3-206ENST00000565990 FAM98CQ17RN3 349 aaKnown RBP16.83■□□□□ 0.28
SF3B3-206ENST00000565990 AEBP1Q8IUX7 1158 aa16.83■□□□□ 0.28
SF3B3-206ENST00000565990 ADAMTS8Q9UP79 889 aa16.83■□□□□ 0.28
SF3B3-206ENST00000565990 THSD7AQ9UPZ6 1657 aa16.82■□□□□ 0.28
SF3B3-206ENST00000565990 RSPH6AQ9H0K4 717 aa16.82■□□□□ 0.28
SF3B3-206ENST00000565990 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.82■□□□□ 0.28
SF3B3-206ENST00000565990 PARP4Q9UKK3 1724 aaKnown RBP16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms