RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-223	ENST00000560858	XP32	Q5T750	250 aa		5.62	□□□□□ -1.51
SPG11-223	ENST00000560858		Q6ZVU0	165 aa		5.62	□□□□□ -1.51
SPG11-223	ENST00000560858	TRMT44	Q8IYL2	757 aa	Known RBP	5.62	□□□□□ -1.51
SPG11-223	ENST00000560858	TSC1	Q92574	1164 aa		5.62	□□□□□ -1.51
SPG11-223	ENST00000560858	C1QTNF2	Q9BXJ5	285 aa		5.62	□□□□□ -1.51
SPG11-223	ENST00000560858	MAGEB6P1	A0A0J9YX57	407 aa		5.61	□□□□□ -1.51
SPG11-223	ENST00000560858	ADAMTS2	O95450	1211 aa		5.61	□□□□□ -1.51
SPG11-223	ENST00000560858	PPP1R26	Q5T8A7	1209 aa	Predicted RBP	5.61	□□□□□ -1.51
SPG11-223	ENST00000560858	SH3RF1	Q7Z6J0	888 aa		5.61	□□□□□ -1.51
SPG11-223	ENST00000560858	NUTM2B	A6NNL0	878 aa	Predicted RBP	5.6	□□□□□ -1.51
SPG11-223	ENST00000560858	PHF20L1	A8MW92	1017 aa		5.6	□□□□□ -1.51
SPG11-223	ENST00000560858	NUTM2E	B1AL46	878 aa	Predicted RBP	5.6	□□□□□ -1.51
SPG11-223	ENST00000560858	PER1	O15534	1290 aa	Predicted RBP	5.6	□□□□□ -1.51
SPG11-223	ENST00000560858	ADAM23	O75077	832 aa		5.6	□□□□□ -1.51
SPG11-223	ENST00000560858	SRSF11	Q05519	484 aa	Known RBP	5.6	□□□□□ -1.51
SPG11-223	ENST00000560858	AMHR2	Q16671	573 aa		5.6	□□□□□ -1.51
SPG11-223	ENST00000560858	NUTM2D	Q5VT03	806 aa	Predicted RBP	5.6	□□□□□ -1.51
SPG11-223	ENST00000560858	GIGYF2	Q6Y7W6	1299 aa	Known RBP	5.6	□□□□□ -1.51
SPG11-223	ENST00000560858	RIC3	Q7Z5B4	369 aa		5.6	□□□□□ -1.51
SPG11-223	ENST00000560858	NUTM2A	Q8IVF1	878 aa	Predicted RBP	5.6	□□□□□ -1.51
SPG11-223	ENST00000560858	BEND7	Q8N7W2	519 aa	Predicted RBP	5.6	□□□□□ -1.51
SPG11-223	ENST00000560858	DHX9	Q08211	1270 aa	Known RBP	5.59	□□□□□ -1.51
SPG11-223	ENST00000560858	CBLB	Q13191	982 aa		5.59	□□□□□ -1.51
SPG11-223	ENST00000560858	LYPD4	Q6UWN0	246 aa		5.59	□□□□□ -1.51
SPG11-223	ENST00000560858	SH3BP5L	Q7L8J4	393 aa		5.59	□□□□□ -1.51
SPG11-223	ENST00000560858	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	5.59	□□□□□ -1.51
SPG11-223	ENST00000560858	CSPP1	Q1MSJ5	1256 aa		5.58	□□□□□ -1.52
SPG11-223	ENST00000560858	CARD14	Q9BXL6	1004 aa		5.58	□□□□□ -1.52
SPG11-223	ENST00000560858	CDV3	Q9UKY7	258 aa	Known RBP	5.58	□□□□□ -1.52
SPG11-223	ENST00000560858	CELA2B	P08218	269 aa	Predicted RBP	5.57	□□□□□ -1.52
SPG11-223	ENST00000560858	CTSO	P43234	321 aa	Predicted RBP	5.57	□□□□□ -1.52
SPG11-223	ENST00000560858	PLA2G4E	Q3MJ16	856 aa		5.57	□□□□□ -1.52
SPG11-223	ENST00000560858	PODN	Q7Z5L7	613 aa		5.57	□□□□□ -1.52
SPG11-223	ENST00000560858	GALNT6	Q8NCL4	622 aa		5.57	□□□□□ -1.52
SPG11-223	ENST00000560858	HELB	Q8NG08	1087 aa	Predicted RBP	5.57	□□□□□ -1.52
SPG11-223	ENST00000560858	CABLES1	Q8TDN4	633 aa		5.57	□□□□□ -1.52
SPG11-223	ENST00000560858	SPOCK3	Q9BQ16	436 aa		5.57	□□□□□ -1.52
SPG11-223	ENST00000560858	POLM	Q9NP87	494 aa	Predicted RBP	5.57	□□□□□ -1.52
SPG11-223	ENST00000560858	RELB	Q01201	579 aa		5.56	□□□□□ -1.52
SPG11-223	ENST00000560858	DCAF5	Q96JK2	942 aa		5.56	□□□□□ -1.52
SPG11-223	ENST00000560858	KCTD15	Q96SI1	283 aa	Predicted RBP	5.56	□□□□□ -1.52
SPG11-223	ENST00000560858	INSM2	Q96T92	566 aa	Predicted RBP	5.56	□□□□□ -1.52
SPG11-223	ENST00000560858	ERFE	Q4G0M1	354 aa		5.55	□□□□□ -1.52
SPG11-223	ENST00000560858	FOXR1	Q6PIV2	292 aa		5.55	□□□□□ -1.52
SPG11-223	ENST00000560858	NEDD1	Q8NHV4	660 aa		5.55	□□□□□ -1.52
SPG11-223	ENST00000560858	AGBL1	Q96MI9	1066 aa		5.55	□□□□□ -1.52
SPG11-223	ENST00000560858	KDM2A	Q9Y2K7	1162 aa		5.55	□□□□□ -1.52
SPG11-223	ENST00000560858	CNTNAP5	Q8WYK1	1306 aa		5.54	□□□□□ -1.52
SPG11-223	ENST00000560858	HAP1	P54257	671 aa	Predicted RBP	5.54	□□□□□ -1.52
SPG11-223	ENST00000560858	BARGIN	Q6ZT62	677 aa		5.54	□□□□□ -1.52
SPG11-223	ENST00000560858	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	5.54	□□□□□ -1.52
SPG11-223	ENST00000560858	ZBTB33	Q86T24	672 aa		5.54	□□□□□ -1.52
SPG11-223	ENST00000560858	RNF217	Q8TC41	542 aa		5.54	□□□□□ -1.52
SPG11-223	ENST00000560858	SLC10A4	Q96EP9	437 aa		5.54	□□□□□ -1.52
SPG11-223	ENST00000560858	GMCL1	Q96IK5	515 aa		5.54	□□□□□ -1.52
SPG11-223	ENST00000560858	ARHGAP9	Q9BRR9	750 aa		5.54	□□□□□ -1.52
SPG11-223	ENST00000560858	SENP3-EIF4A1	A0A087X0R7	540 aa		5.53	□□□□□ -1.52
SPG11-223	ENST00000560858	PDXDC2P	Q6P474	469 aa		5.53	□□□□□ -1.52
SPG11-223	ENST00000560858	ZNF395	Q9H8N7	513 aa	Predicted RBP	5.53	□□□□□ -1.52
SPG11-223	ENST00000560858		K7ELQ4	463 aa	Predicted RBP	5.52	□□□□□ -1.53
SPG11-223	ENST00000560858	ZMYND10	O75800	440 aa		5.52	□□□□□ -1.53
SPG11-223	ENST00000560858	BCR	P11274	1271 aa		5.52	□□□□□ -1.53
SPG11-223	ENST00000560858	TUSC1	Q2TAM9	212 aa		5.52	□□□□□ -1.53
SPG11-223	ENST00000560858	LYSMD3	Q7Z3D4	306 aa		5.52	□□□□□ -1.53
SPG11-223	ENST00000560858	TRIM52	Q96A61	297 aa		5.52	□□□□□ -1.53
SPG11-223	ENST00000560858	MBIP	Q9NS73	344 aa		5.52	□□□□□ -1.53
SPG11-223	ENST00000560858	LILRB3	O75022	631 aa		5.51	□□□□□ -1.53
SPG11-223	ENST00000560858	GAS6	Q14393	721 aa		5.51	□□□□□ -1.53
SPG11-223	ENST00000560858	QPCT	Q16769	361 aa		5.51	□□□□□ -1.53
SPG11-223	ENST00000560858	LRRC4B	Q9NT99	713 aa		5.51	□□□□□ -1.53
SPG11-223	ENST00000560858	PROC	P04070	461 aa		5.5	□□□□□ -1.53
SPG11-223	ENST00000560858	PARP9	Q8IXQ6	854 aa		5.5	□□□□□ -1.53
SPG11-223	ENST00000560858	NSFL1C	Q9UNZ2	370 aa	Known RBP	5.5	□□□□□ -1.53
SPG11-223	ENST00000560858	PTK2	Q05397	1052 aa		5.49	□□□□□ -1.53
SPG11-223	ENST00000560858	NBPF20	Q3BBV1	942 aa		5.49	□□□□□ -1.53
SPG11-223	ENST00000560858	INTS6L	Q5JSJ4	861 aa	Known RBP	5.49	□□□□□ -1.53
SPG11-223	ENST00000560858	MYSM1	Q5VVJ2	828 aa		5.49	□□□□□ -1.53
SPG11-223	ENST00000560858	TRIM22	Q8IYM9	498 aa		5.49	□□□□□ -1.53
SPG11-223	ENST00000560858	LIMD1	Q9UGP4	676 aa		5.49	□□□□□ -1.53
SPG11-223	ENST00000560858	FKBPL	Q9UIM3	349 aa		5.49	□□□□□ -1.53
SPG11-223	ENST00000560858	IGF1R	P08069	1367 aa		5.49	□□□□□ -1.53
SPG11-223	ENST00000560858		H7C1W4	665 aa		5.48	□□□□□ -1.53
SPG11-223	ENST00000560858	ITGB2	P05107	769 aa		5.48	□□□□□ -1.53
SPG11-223	ENST00000560858	ADH1A	P07327	375 aa		5.48	□□□□□ -1.53
SPG11-223	ENST00000560858	PTGIR	P43119	386 aa		5.48	□□□□□ -1.53
SPG11-223	ENST00000560858	RTL5	Q5HYW3	569 aa	Predicted RBP	5.48	□□□□□ -1.53
SPG11-223	ENST00000560858	RIPOR1	Q6ZS17	1223 aa		5.48	□□□□□ -1.53
SPG11-223	ENST00000560858	PRICKLE2	Q7Z3G6	844 aa		5.48	□□□□□ -1.53
SPG11-223	ENST00000560858		Q8N3U1	123 aa		5.48	□□□□□ -1.53
SPG11-223	ENST00000560858	TRERF1	Q96PN7	1200 aa		5.48	□□□□□ -1.53
SPG11-223	ENST00000560858	CUEDC1	Q9NWM3	386 aa	Predicted RBP	5.48	□□□□□ -1.53
SPG11-223	ENST00000560858	ALYREF	Q86V81	257 aa	Known RBP	5.47	□□□□□ -1.53
SPG11-223	ENST00000560858	ZNF784	Q8NCA9	323 aa	Predicted RBP	5.47	□□□□□ -1.53
SPG11-223	ENST00000560858	KRTAP4-8	Q9BYQ9	185 aa		5.47	□□□□□ -1.53
SPG11-223	ENST00000560858	GPR25	O00155	361 aa		5.46	□□□□□ -1.54
SPG11-223	ENST00000560858	BAG6	P46379	1132 aa		5.46	□□□□□ -1.54
SPG11-223	ENST00000560858	RNF144A	P50876	292 aa	Predicted RBP	5.46	□□□□□ -1.54
SPG11-223	ENST00000560858	CTDSPL2	Q05D32	466 aa		5.46	□□□□□ -1.54
SPG11-223	ENST00000560858	FOXD4L5	Q5VV16	416 aa	Predicted RBP	5.46	□□□□□ -1.54
SPG11-223	ENST00000560858	ZNF837	Q96EG3	531 aa	Predicted RBP	5.46	□□□□□ -1.54

Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms