RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 RGS17Q9UGC6 210 aaPredicted RBP29.56■■■□□ 2.32
SNX1-206ENST00000559389 USP21Q9UK80 565 aa29.56■■■□□ 2.32
SNX1-206ENST00000559389 KIF24Q5T7B8 1368 aa29.55■■■□□ 2.32
SNX1-206ENST00000559389 RRS1Q15050 365 aaKnown RBP29.55■■■□□ 2.32
SNX1-206ENST00000559389 MAP2P11137 1827 aaKnown RBP29.55■■■□□ 2.32
SNX1-206ENST00000559389 ATRNO75882 1429 aa29.54■■■□□ 2.32
SNX1-206ENST00000559389 BLMP54132 1417 aaPredicted RBP29.54■■■□□ 2.32
SNX1-206ENST00000559389 ZNF772Q68DY9 489 aaPredicted RBP29.54■■■□□ 2.32
SNX1-206ENST00000559389 UNC5CLQ8IV45 518 aa29.53■■■□□ 2.32
SNX1-206ENST00000559389 TNNT2P45379 298 aaPredicted RBP29.52■■■□□ 2.32
SNX1-206ENST00000559389 AXIN2Q9Y2T1 843 aa29.51■■■□□ 2.31
SNX1-206ENST00000559389 FLT4P35916 1363 aa29.51■■■□□ 2.31
SNX1-206ENST00000559389 EMILIN1Q9Y6C2 1016 aa29.5■■■□□ 2.31
SNX1-206ENST00000559389 CDK12Q9NYV4 1490 aaPredicted RBP29.49■■■□□ 2.31
SNX1-206ENST00000559389 CNGB1Q14028 1251 aaPredicted RBP29.49■■■□□ 2.31
SNX1-206ENST00000559389 IP6K1Q92551 441 aa29.49■■■□□ 2.31
SNX1-206ENST00000559389 POLKQ9UBT6 870 aa29.49■■■□□ 2.31
SNX1-206ENST00000559389 FAM208AQ9UK61 1670 aaKnown RBP29.49■■■□□ 2.31
SNX1-206ENST00000559389 PARD3Q8TEW0 1356 aa29.49■■■□□ 2.31
SNX1-206ENST00000559389 HOXC9P31274 260 aa29.48■■■□□ 2.31
SNX1-206ENST00000559389 AMPHP49418 695 aa29.48■■■□□ 2.31
SNX1-206ENST00000559389 TRPC5Q9UL62 973 aaPredicted RBP29.47■■■□□ 2.31
SNX1-206ENST00000559389 GLI3P10071 1580 aa29.46■■■□□ 2.31
SNX1-206ENST00000559389 ERBB3P21860 1342 aa29.45■■■□□ 2.31
SNX1-206ENST00000559389 INSRP06213 1382 aa29.45■■■□□ 2.31
SNX1-206ENST00000559389 VPS72Q15906 364 aa29.45■■■□□ 2.31
SNX1-206ENST00000559389 STRN4Q9NRL3 753 aa29.45■■■□□ 2.31
SNX1-206ENST00000559389 POTEAQ6S8J7 498 aa29.43■■■□□ 2.3
SNX1-206ENST00000559389 CRB1P82279 1406 aa29.43■■■□□ 2.3
SNX1-206ENST00000559389 WDR17Q8IZU2 1322 aa29.43■■■□□ 2.3
SNX1-206ENST00000559389 EVA1CP58658 441 aa29.41■■■□□ 2.3
SNX1-206ENST00000559389 LARP1Q6PKG0 1096 aaKnown RBP29.41■■■□□ 2.3
SNX1-206ENST00000559389 QTRT2Q9H974 415 aaKnown RBP29.41■■■□□ 2.3
SNX1-206ENST00000559389 PPM1GO15355 546 aaPredicted RBP29.4■■■□□ 2.3
SNX1-206ENST00000559389 ANKRD24Q8TF21 1146 aa29.4■■■□□ 2.3
SNX1-206ENST00000559389 HSP90AB2PQ58FF8 381 aa29.39■■■□□ 2.3
SNX1-206ENST00000559389 SPATA31A5Q5VU36 1347 aa29.39■■■□□ 2.3
SNX1-206ENST00000559389 SPATA31A7Q8IWB4 1347 aa29.39■■■□□ 2.3
SNX1-206ENST00000559389 WNK3Q9BYP7 1800 aa29.38■■■□□ 2.29
SNX1-206ENST00000559389 GJD4Q96KN9 370 aaPredicted RBP29.37■■■□□ 2.29
SNX1-206ENST00000559389 SPATA31A1Q5TZJ5 1347 aa29.37■■■□□ 2.29
SNX1-206ENST00000559389 CSB-PGBD3P0DP91 1061 aa29.36■■■□□ 2.29
SNX1-206ENST00000559389 RGPD2P0DJD1 1756 aa29.36■■■□□ 2.29
SNX1-206ENST00000559389 COL3A1P02461 1466 aaPredicted RBP29.36■■■□□ 2.29
SNX1-206ENST00000559389 PPP2R1AP30153 589 aa29.35■■■□□ 2.29
SNX1-206ENST00000559389 MTHFSP49914 203 aa29.35■■■□□ 2.29
SNX1-206ENST00000559389 RALBP1Q15311 655 aa29.35■■■□□ 2.29
SNX1-206ENST00000559389 CCDC9Q9Y3X0 531 aaKnown RBP29.35■■■□□ 2.29
SNX1-206ENST00000559389 RBM6P78332 1123 aaKnown RBP29.34■■■□□ 2.29
SNX1-206ENST00000559389 LTV1Q96GA3 475 aaPredicted RBP29.34■■■□□ 2.29
SNX1-206ENST00000559389 THSD7AQ9UPZ6 1657 aa29.34■■■□□ 2.29
SNX1-206ENST00000559389 TOM1L2Q6ZVM7 507 aa29.33■■■□□ 2.29
SNX1-206ENST00000559389 RXRBP28702 533 aa29.31■■■□□ 2.28
SNX1-206ENST00000559389 CARD10Q9BWT7 1032 aa29.31■■■□□ 2.28
SNX1-206ENST00000559389 PRKRIP1Q9H875 184 aaPredicted RBP29.3■■■□□ 2.28
SNX1-206ENST00000559389 RGPD1P0DJD0 1748 aa29.3■■■□□ 2.28
SNX1-206ENST00000559389 RGS12O14924 1447 aa29.29■■■□□ 2.28
SNX1-206ENST00000559389 NCAPD2Q15021 1401 aa29.29■■■□□ 2.28
SNX1-206ENST00000559389 EIF4A2Q14240 407 aaKnown RBP29.29■■■□□ 2.28
SNX1-206ENST00000559389 TCP11L2Q8N4U5 519 aa29.28■■■□□ 2.28
SNX1-206ENST00000559389 NLRP2Q9NX02 1062 aa29.28■■■□□ 2.28
SNX1-206ENST00000559389 MYBBP1AQ9BQG0 1328 aaKnown RBP29.27■■■□□ 2.28
SNX1-206ENST00000559389 USP35Q9P2H5 1018 aa29.27■■■□□ 2.28
SNX1-206ENST00000559389 THRAP3Q9Y2W1 955 aaKnown RBP29.27■■■□□ 2.28
SNX1-206ENST00000559389 DISP2A7MBM2 1401 aa29.27■■■□□ 2.28
SNX1-206ENST00000559389 BARGINQ6ZT62 677 aa29.26■■■□□ 2.27
SNX1-206ENST00000559389 PARP4Q9UKK3 1724 aaKnown RBP29.25■■■□□ 2.27
SNX1-206ENST00000559389 LRRC37A3O60309 1634 aa29.25■■■□□ 2.27
SNX1-206ENST00000559389 FAM98CQ17RN3 349 aaKnown RBP29.23■■■□□ 2.27
SNX1-206ENST00000559389 NBPF6Q5VWK0 638 aa29.23■■■□□ 2.27
SNX1-206ENST00000559389 NBPF4Q96M43 638 aa29.23■■■□□ 2.27
SNX1-206ENST00000559389 ONECUT3O60422 494 aaPredicted RBP29.22■■■□□ 2.27
SNX1-206ENST00000559389 IL13P35225 146 aa29.21■■■□□ 2.27
SNX1-206ENST00000559389 CFAP53Q96M91 514 aa29.21■■■□□ 2.27
SNX1-206ENST00000559389 IGSF1Q8N6C5 1336 aa29.2■■■□□ 2.27
SNX1-206ENST00000559389 EYA1Q99502 592 aa29.2■■■□□ 2.26
SNX1-206ENST00000559389 MEGF6O75095 1541 aa29.19■■■□□ 2.26
SNX1-206ENST00000559389 ANP32CO43423 234 aa29.18■■■□□ 2.26
SNX1-206ENST00000559389 DIAPH1O60610 1272 aaKnown RBP29.18■■■□□ 2.26
SNX1-206ENST00000559389 USHBP1Q8N6Y0 703 aa29.18■■■□□ 2.26
SNX1-206ENST00000559389 BRWD3Q6RI45 1802 aa29.17■■■□□ 2.26
SNX1-206ENST00000559389 SEPT12Q8IYM1 358 aa29.16■■■□□ 2.26
SNX1-206ENST00000559389 TNS2Q63HR2 1409 aa29.15■■■□□ 2.26
SNX1-206ENST00000559389 CDCA7Q9BWT1 371 aaPredicted RBP29.15■■■□□ 2.26
SNX1-206ENST00000559389 OVOS2A0A0G2JMS6 1433 aa29.14■■■□□ 2.26
SNX1-206ENST00000559389 IL2RBP14784 551 aa29.14■■■□□ 2.26
SNX1-206ENST00000559389 KDRP35968 1356 aa29.13■■■□□ 2.25
SNX1-206ENST00000559389 A0A0G2JS52 829 aa29.13■■■□□ 2.25
SNX1-206ENST00000559389 MYT1Q01538 1121 aa29.13■■■□□ 2.25
SNX1-206ENST00000559389 PKD1L3Q7Z443 1732 aa29.12■■■□□ 2.25
SNX1-206ENST00000559389 SHANK3Q9BYB0 1731 aa29.11■■■□□ 2.25
SNX1-206ENST00000559389 PLEKHG2Q9H7P9 1386 aa29.1■■■□□ 2.25
SNX1-206ENST00000559389 ILDR2Q71H61 639 aa29.08■■■□□ 2.25
SNX1-206ENST00000559389 RAPGEF4Q8WZA2 1011 aa29.08■■■□□ 2.25
SNX1-206ENST00000559389 AEBP1Q8IUX7 1158 aa29.07■■■□□ 2.24
SNX1-206ENST00000559389 U2SURPO15042 1029 aaKnown RBP29.06■■■□□ 2.24
SNX1-206ENST00000559389 SULT6B1Q6IMI4 303 aa29.06■■■□□ 2.24
SNX1-206ENST00000559389 NUDCQ9Y266 331 aa29.06■■■□□ 2.24
SNX1-206ENST00000559389 TATP17735 454 aaPredicted RBP29.05■■■□□ 2.24
SNX1-206ENST00000559389 DDB1Q16531 1140 aa29.05■■■□□ 2.24
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms