RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 SKIV2LQ15477 1246 aaKnown RBP6.99□□□□□ -1.29
VPS13C-205ENST00000558088 PDXDC2PQ6P474 469 aa6.99□□□□□ -1.29
VPS13C-205ENST00000558088 ZBTB33Q86T24 672 aa6.99□□□□□ -1.29
VPS13C-205ENST00000558088 FKBPLQ9UIM3 349 aa6.99□□□□□ -1.29
VPS13C-205ENST00000558088 VSIG8P0DPA2 414 aa6.98□□□□□ -1.29
VPS13C-205ENST00000558088 SH3D19Q5HYK7 790 aa6.98□□□□□ -1.29
VPS13C-205ENST00000558088 TTLL8A6PVC2 850 aa6.97□□□□□ -1.29
VPS13C-205ENST00000558088 PTK2Q05397 1052 aa6.97□□□□□ -1.29
VPS13C-205ENST00000558088 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.97□□□□□ -1.29
VPS13C-205ENST00000558088 PPP1R26Q5T8A7 1209 aaPredicted RBP6.97□□□□□ -1.29
VPS13C-205ENST00000558088 SOS2Q07890 1332 aaPredicted RBP6.97□□□□□ -1.29
VPS13C-205ENST00000558088 PPFIA3O75145 1194 aa6.96□□□□□ -1.3
VPS13C-205ENST00000558088 AP1G2O75843 785 aa6.96□□□□□ -1.3
VPS13C-205ENST00000558088 LRRN4Q8WUT4 740 aa6.96□□□□□ -1.3
VPS13C-205ENST00000558088 KCTD15Q96SI1 283 aaPredicted RBP6.96□□□□□ -1.3
VPS13C-205ENST00000558088 KDM4CQ9H3R0 1056 aa6.96□□□□□ -1.3
VPS13C-205ENST00000558088 NR6A1Q15406 480 aa6.95□□□□□ -1.3
VPS13C-205ENST00000558088 NBPF20Q3BBV1 942 aa6.95□□□□□ -1.3
VPS13C-205ENST00000558088 DNMT3LQ9UJW3 386 aa6.95□□□□□ -1.3
VPS13C-205ENST00000558088 GPSM3Q9Y4H4 160 aa6.95□□□□□ -1.3
VPS13C-205ENST00000558088 PPP2R2DQ66LE6 453 aa6.93□□□□□ -1.3
VPS13C-205ENST00000558088 TRIM52Q96A61 297 aa6.93□□□□□ -1.3
VPS13C-205ENST00000558088 GPBP1L1Q9HC44 474 aaPredicted RBP6.93□□□□□ -1.3
VPS13C-205ENST00000558088 CBLBQ13191 982 aa6.92□□□□□ -1.3
VPS13C-205ENST00000558088 Q6ZVU0 165 aa6.92□□□□□ -1.3
VPS13C-205ENST00000558088 PROCA1Q8NCQ7 364 aaPredicted RBP6.92□□□□□ -1.3
VPS13C-205ENST00000558088 BCANQ96GW7 911 aa6.92□□□□□ -1.3
VPS13C-205ENST00000558088 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.92□□□□□ -1.3
VPS13C-205ENST00000558088 FAM117AQ9C073 453 aa6.92□□□□□ -1.3
VPS13C-205ENST00000558088 FIGNL2A6NMB9 653 aa6.91□□□□□ -1.3
VPS13C-205ENST00000558088 SPINT1O43278 529 aa6.91□□□□□ -1.3
VPS13C-205ENST00000558088 LORP23490 312 aaPredicted RBP6.91□□□□□ -1.3
VPS13C-205ENST00000558088 PTSQ03393 145 aa6.91□□□□□ -1.3
VPS13C-205ENST00000558088 ADAM32Q8TC27 787 aa6.91□□□□□ -1.3
VPS13C-205ENST00000558088 RELBQ01201 579 aa6.9□□□□□ -1.3
VPS13C-205ENST00000558088 INTS6LQ5JSJ4 861 aaKnown RBP6.9□□□□□ -1.3
VPS13C-205ENST00000558088 DZIP3Q86Y13 1208 aaKnown RBP6.9□□□□□ -1.3
VPS13C-205ENST00000558088 USP17L8P0C7I0 530 aa6.89□□□□□ -1.31
VPS13C-205ENST00000558088 RAB15P59190 212 aa6.89□□□□□ -1.31
VPS13C-205ENST00000558088 POLMQ9NP87 494 aaPredicted RBP6.89□□□□□ -1.31
VPS13C-205ENST00000558088 LOC100996750A0A140TA64 210 aa6.88□□□□□ -1.31
VPS13C-205ENST00000558088 AGBL1Q96MI9 1066 aa6.88□□□□□ -1.31
VPS13C-205ENST00000558088 KRTAP4-6Q9BYQ5 205 aa6.88□□□□□ -1.31
VPS13C-205ENST00000558088 CCDC155Q8N6L0 562 aa6.87□□□□□ -1.31
VPS13C-205ENST00000558088 PCMTD1Q96MG8 357 aaPredicted RBP6.87□□□□□ -1.31
VPS13C-205ENST00000558088 INSM2Q96T92 566 aaPredicted RBP6.87□□□□□ -1.31
VPS13C-205ENST00000558088 CNTNAP3BQ96NU0 1288 aa6.86□□□□□ -1.31
VPS13C-205ENST00000558088 CNTNAP3Q9BZ76 1288 aa6.86□□□□□ -1.31
VPS13C-205ENST00000558088 CDC14CA4D256 554 aa6.85□□□□□ -1.31
VPS13C-205ENST00000558088 ADH1AP07327 375 aa6.85□□□□□ -1.31
VPS13C-205ENST00000558088 RFC5P40937 340 aa6.85□□□□□ -1.31
VPS13C-205ENST00000558088 CTSOP43234 321 aaPredicted RBP6.85□□□□□ -1.31
VPS13C-205ENST00000558088 FBXO31Q5XUX0 539 aaPredicted RBP6.85□□□□□ -1.31
VPS13C-205ENST00000558088 ZNF784Q8NCA9 323 aaPredicted RBP6.85□□□□□ -1.31
VPS13C-205ENST00000558088 NANOS1Q8WY41 292 aaKnown RBP6.85□□□□□ -1.31
VPS13C-205ENST00000558088 OCSTAMPQ9BR26 566 aa6.85□□□□□ -1.31
VPS13C-205ENST00000558088 ZNF395Q9H8N7 513 aaPredicted RBP6.85□□□□□ -1.31
VPS13C-205ENST00000558088 HMX1Q9NP08 348 aaPredicted RBP6.85□□□□□ -1.31
VPS13C-205ENST00000558088 RNF225M0QZC1 329 aaPredicted RBP6.84□□□□□ -1.31
VPS13C-205ENST00000558088 ITGA6P23229 1130 aa6.84□□□□□ -1.31
VPS13C-205ENST00000558088 TMEM259Q4ZIN3 620 aa6.84□□□□□ -1.31
VPS13C-205ENST00000558088 SV2AQ7L0J3 742 aa6.84□□□□□ -1.31
VPS13C-205ENST00000558088 SEPT12Q8IYM1 358 aa6.84□□□□□ -1.31
VPS13C-205ENST00000558088 EPS8L1Q8TE68 723 aa6.84□□□□□ -1.31
VPS13C-205ENST00000558088 COL25A1Q9BXS0 654 aaPredicted RBP6.84□□□□□ -1.31
VPS13C-205ENST00000558088 TMPRSS4Q9NRS4 437 aa6.84□□□□□ -1.31
VPS13C-205ENST00000558088 SLC35F4A4IF30 521 aa6.83□□□□□ -1.32
VPS13C-205ENST00000558088 ERVH48-1M5A8F1 160 aa6.83□□□□□ -1.32
VPS13C-205ENST00000558088 RNF217Q8TC41 542 aa6.83□□□□□ -1.32
VPS13C-205ENST00000558088 GOPCQ9HD26 462 aa6.83□□□□□ -1.32
VPS13C-205ENST00000558088 PTGIRP43119 386 aa6.82□□□□□ -1.32
VPS13C-205ENST00000558088 VWA5B2Q8N398 1253 aa6.82□□□□□ -1.32
VPS13C-205ENST00000558088 SVOPQ8N4V2 548 aa6.82□□□□□ -1.32
VPS13C-205ENST00000558088 GPR161Q8N6U8 529 aaKnown RBP6.82□□□□□ -1.32
VPS13C-205ENST00000558088 ZNF592Q92610 1267 aa6.82□□□□□ -1.32
VPS13C-205ENST00000558088 ESPNB1AK53 854 aa6.81□□□□□ -1.32
VPS13C-205ENST00000558088 KRT76Q01546 638 aa6.81□□□□□ -1.32
VPS13C-205ENST00000558088 LYSMD3Q7Z3D4 306 aa6.81□□□□□ -1.32
VPS13C-205ENST00000558088 CCDC125Q86Z20 511 aa6.81□□□□□ -1.32
VPS13C-205ENST00000558088 CYLDQ9NQC7 956 aa6.81□□□□□ -1.32
VPS13C-205ENST00000558088 PCDHB9Q9Y5E1 797 aa6.81□□□□□ -1.32
VPS13C-205ENST00000558088 ZBBXA8MT70 800 aa6.8□□□□□ -1.32
VPS13C-205ENST00000558088 KCNMA1Q12791 1236 aa6.8□□□□□ -1.32
VPS13C-205ENST00000558088 LILRA1O75019 489 aa6.79□□□□□ -1.32
VPS13C-205ENST00000558088 NEUROD2Q15784 382 aa6.79□□□□□ -1.32
VPS13C-205ENST00000558088 RNF20Q5VTR2 975 aa6.79□□□□□ -1.32
VPS13C-205ENST00000558088 ESF1Q9H501 851 aaKnown RBP6.79□□□□□ -1.32
VPS13C-205ENST00000558088 ZNF330Q9Y3S2 320 aaPredicted RBP6.79□□□□□ -1.32
VPS13C-205ENST00000558088 ATP5J2-PTCD1G3V325 749 aa6.78□□□□□ -1.32
VPS13C-205ENST00000558088 ADD1P35611 737 aaKnown RBP6.78□□□□□ -1.32
VPS13C-205ENST00000558088 RNFT1Q5M7Z0 435 aa6.78□□□□□ -1.32
VPS13C-205ENST00000558088 FOXD4L5Q5VV16 416 aaPredicted RBP6.78□□□□□ -1.32
VPS13C-205ENST00000558088 TMEM151AQ8N4L1 468 aa6.78□□□□□ -1.32
VPS13C-205ENST00000558088 TRIM34Q9BYJ4 488 aa6.78□□□□□ -1.32
VPS13C-205ENST00000558088 ADAMTS8Q9UP79 889 aa6.78□□□□□ -1.32
VPS13C-205ENST00000558088 APBB1O00213 710 aa6.77□□□□□ -1.33
VPS13C-205ENST00000558088 MEN1O00255 615 aa6.77□□□□□ -1.33
VPS13C-205ENST00000558088 MCCD1P59942 119 aaPredicted RBP6.77□□□□□ -1.33
VPS13C-205ENST00000558088 FOXR1Q6PIV2 292 aa6.77□□□□□ -1.33
VPS13C-205ENST00000558088 GIGYF1O75420 1035 aaPredicted RBP6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms