RNA–Protein interactions for RNA: ENST00000555773.5

SHMT2-221, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 600 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-221ENST00000555773 NGLY1Q96IV0 654 aa16.73■□□□□ 0.27
SHMT2-221ENST00000555773 BLMP54132 1417 aaPredicted RBP16.72■□□□□ 0.27
SHMT2-221ENST00000555773 DIAPH1O60610 1272 aaKnown RBP16.72■□□□□ 0.27
SHMT2-221ENST00000555773 NUDCQ9Y266 331 aa16.72■□□□□ 0.27
SHMT2-221ENST00000555773 EVA1CP58658 441 aa16.71■□□□□ 0.27
SHMT2-221ENST00000555773 FNBP4Q8N3X1 1017 aaPredicted RBP16.71■□□□□ 0.27
SHMT2-221ENST00000555773 BTG4Q9NY30 223 aa16.71■□□□□ 0.27
SHMT2-221ENST00000555773 PHRF1Q9P1Y6 1649 aaKnown RBP16.7■□□□□ 0.26
SHMT2-221ENST00000555773 CDK12Q9NYV4 1490 aaPredicted RBP16.7■□□□□ 0.26
SHMT2-221ENST00000555773 IL13P35225 146 aa16.7■□□□□ 0.26
SHMT2-221ENST00000555773 ANKRD24Q8TF21 1146 aa16.7■□□□□ 0.26
SHMT2-221ENST00000555773 C8orf37Q96NL8 207 aa16.7■□□□□ 0.26
SHMT2-221ENST00000555773 MRS2Q9HD23 443 aa16.7■□□□□ 0.26
SHMT2-221ENST00000555773 CRYBG1Q9Y4K1 1723 aa16.7■□□□□ 0.26
SHMT2-221ENST00000555773 ABCC6O95255 1503 aa16.7■□□□□ 0.26
SHMT2-221ENST00000555773 EIF4A2Q14240 407 aaKnown RBP16.69■□□□□ 0.26
SHMT2-221ENST00000555773 CCDC184Q52MB2 194 aa16.68■□□□□ 0.26
SHMT2-221ENST00000555773 LTV1Q96GA3 475 aaPredicted RBP16.68■□□□□ 0.26
SHMT2-221ENST00000555773 ERBB3P21860 1342 aa16.68■□□□□ 0.26
SHMT2-221ENST00000555773 LRP6O75581 1613 aa16.67■□□□□ 0.26
SHMT2-221ENST00000555773 CSB-PGBD3P0DP91 1061 aa16.67■□□□□ 0.26
SHMT2-221ENST00000555773 UNC5CLQ8IV45 518 aa16.67■□□□□ 0.26
SHMT2-221ENST00000555773 MAP2P11137 1827 aaKnown RBP16.66■□□□□ 0.26
SHMT2-221ENST00000555773 PNISRQ8TF01 805 aaKnown RBP16.66■□□□□ 0.26
SHMT2-221ENST00000555773 WDR17Q8IZU2 1322 aa16.66■□□□□ 0.26
SHMT2-221ENST00000555773 ABCA3Q99758 1704 aa16.65■□□□□ 0.26
SHMT2-221ENST00000555773 EYA1Q99502 592 aa16.65■□□□□ 0.26
SHMT2-221ENST00000555773 STRN4Q9NRL3 753 aa16.65■□□□□ 0.26
SHMT2-221ENST00000555773 CAMTA1Q9Y6Y1 1673 aa16.65■□□□□ 0.26
SHMT2-221ENST00000555773 SLIT2O94813 1529 aa16.65■□□□□ 0.26
SHMT2-221ENST00000555773 U2SURPO15042 1029 aaKnown RBP16.64■□□□□ 0.25
SHMT2-221ENST00000555773 WDR43Q15061 677 aaKnown RBP eCLIP16.64■□□□□ 0.25
SHMT2-221ENST00000555773 CARD10Q9BWT7 1032 aa16.64■□□□□ 0.25
SHMT2-221ENST00000555773 NLRP2Q9NX02 1062 aa16.64■□□□□ 0.25
SHMT2-221ENST00000555773 USP21Q9UK80 565 aa16.64■□□□□ 0.25
SHMT2-221ENST00000555773 COL3A1P02461 1466 aaPredicted RBP16.63■□□□□ 0.25
SHMT2-221ENST00000555773 U2AF1L5P0DN76 240 aaPredicted RBP16.63■□□□□ 0.25
SHMT2-221ENST00000555773 U2AF1Q01081 240 aaKnown RBP eCLIP16.63■□□□□ 0.25
SHMT2-221ENST00000555773 NBPF6Q5VWK0 638 aa16.63■□□□□ 0.25
SHMT2-221ENST00000555773 LARP1Q6PKG0 1096 aaKnown RBP16.63■□□□□ 0.25
SHMT2-221ENST00000555773 TOM1L2Q6ZVM7 507 aa16.63■□□□□ 0.25
SHMT2-221ENST00000555773 NBPF4Q96M43 638 aa16.63■□□□□ 0.25
SHMT2-221ENST00000555773 COL14A1Q05707 1796 aaKnown RBP16.63■□□□□ 0.25
SHMT2-221ENST00000555773 AFF2P51816 1311 aa16.63■□□□□ 0.25
SHMT2-221ENST00000555773 PEAK1Q9H792 1746 aa16.62■□□□□ 0.25
SHMT2-221ENST00000555773 COL5A2P05997 1499 aaPredicted RBP16.62■□□□□ 0.25
SHMT2-221ENST00000555773 COL18A1P39060 1754 aa16.62■□□□□ 0.25
SHMT2-221ENST00000555773 FCHSD2O94868 740 aa16.62■□□□□ 0.25
SHMT2-221ENST00000555773 VPS72Q15906 364 aa16.62■□□□□ 0.25
SHMT2-221ENST00000555773 PNNQ9H307 717 aaKnown RBP16.62■□□□□ 0.25
SHMT2-221ENST00000555773 IGSF1Q8N6C5 1336 aa16.62■□□□□ 0.25
SHMT2-221ENST00000555773 ZNF772Q68DY9 489 aaPredicted RBP16.61■□□□□ 0.25
SHMT2-221ENST00000555773 BCL9LQ86UU0 1499 aa16.61■□□□□ 0.25
SHMT2-221ENST00000555773 LMO7Q8WWI1 1683 aa16.6■□□□□ 0.25
SHMT2-221ENST00000555773 LTN1O94822 1766 aa16.6■□□□□ 0.25
SHMT2-221ENST00000555773 SULT6B1Q6IMI4 303 aa16.6■□□□□ 0.25
SHMT2-221ENST00000555773 TRPC5Q9UL62 973 aaPredicted RBP16.6■□□□□ 0.25
SHMT2-221ENST00000555773 ADAMTS8Q9UP79 889 aa16.6■□□□□ 0.25
SHMT2-221ENST00000555773 THRAP3Q9Y2W1 955 aaKnown RBP16.6■□□□□ 0.25
SHMT2-221ENST00000555773 CRB1P82279 1406 aa16.59■□□□□ 0.25
SHMT2-221ENST00000555773 TCP11L2Q8N4U5 519 aa16.58■□□□□ 0.24
SHMT2-221ENST00000555773 SPATA31A5Q5VU36 1347 aa16.58■□□□□ 0.24
SHMT2-221ENST00000555773 SPATA31A7Q8IWB4 1347 aa16.58■□□□□ 0.24
SHMT2-221ENST00000555773 SPATA31A1Q5TZJ5 1347 aa16.57■□□□□ 0.24
SHMT2-221ENST00000555773 FAM9BQ8IZU0 186 aa16.57■□□□□ 0.24
SHMT2-221ENST00000555773 QTRT2Q9H974 415 aaKnown RBP16.57■□□□□ 0.24
SHMT2-221ENST00000555773 CCDC9Q9Y3X0 531 aaKnown RBP16.57■□□□□ 0.24
SHMT2-221ENST00000555773 KDRP35968 1356 aa16.56■□□□□ 0.24
SHMT2-221ENST00000555773 HMOX1P09601 288 aa16.56■□□□□ 0.24
SHMT2-221ENST00000555773 USHBP1Q8N6Y0 703 aa16.56■□□□□ 0.24
SHMT2-221ENST00000555773 RAPGEF4Q8WZA2 1011 aa16.56■□□□□ 0.24
SHMT2-221ENST00000555773 CDCA7Q9BWT1 371 aaPredicted RBP16.56■□□□□ 0.24
SHMT2-221ENST00000555773 NCAPD2Q15021 1401 aa16.55■□□□□ 0.24
SHMT2-221ENST00000555773 NEFMP07197 916 aa16.55■□□□□ 0.24
SHMT2-221ENST00000555773 BARGINQ6ZT62 677 aa16.55■□□□□ 0.24
SHMT2-221ENST00000555773 AEBP1Q8IUX7 1158 aa16.55■□□□□ 0.24
SHMT2-221ENST00000555773 GJD4Q96KN9 370 aaPredicted RBP16.55■□□□□ 0.24
SHMT2-221ENST00000555773 RSPH6AQ9H0K4 717 aa16.55■□□□□ 0.24
SHMT2-221ENST00000555773 NWD2Q9ULI1 1742 aa16.54■□□□□ 0.24
SHMT2-221ENST00000555773 PHF23Q9BUL5 403 aaPredicted RBP16.54■□□□□ 0.24
SHMT2-221ENST00000555773 USP35Q9P2H5 1018 aa16.54■□□□□ 0.24
SHMT2-221ENST00000555773 IL2RBP14784 551 aa16.53■□□□□ 0.24
SHMT2-221ENST00000555773 TATP17735 454 aaPredicted RBP16.53■□□□□ 0.24
SHMT2-221ENST00000555773 PRKAR2BP31323 418 aa16.53■□□□□ 0.24
SHMT2-221ENST00000555773 PLEKHF1Q96S99 279 aa16.53■□□□□ 0.24
SHMT2-221ENST00000555773 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.53■□□□□ 0.24
SHMT2-221ENST00000555773 ATRNO75882 1429 aa16.53■□□□□ 0.24
SHMT2-221ENST00000555773 PLEKHG2Q9H7P9 1386 aa16.52■□□□□ 0.24
SHMT2-221ENST00000555773 ONECUT3O60422 494 aaPredicted RBP16.52■□□□□ 0.24
SHMT2-221ENST00000555773 AMOTQ4VCS5 1084 aa16.52■□□□□ 0.24
SHMT2-221ENST00000555773 RUNDC1Q96C34 613 aa16.52■□□□□ 0.24
SHMT2-221ENST00000555773 PLCH1Q4KWH8 1693 aa16.51■□□□□ 0.23
SHMT2-221ENST00000555773 PLEKHO1Q53GL0 409 aaPredicted RBP16.51■□□□□ 0.23
SHMT2-221ENST00000555773 RBM6P78332 1123 aaKnown RBP16.5■□□□□ 0.23
SHMT2-221ENST00000555773 RGS17Q9UGC6 210 aaPredicted RBP16.5■□□□□ 0.23
SHMT2-221ENST00000555773 MAPK8IP3Q9UPT6 1336 aa16.49■□□□□ 0.23
SHMT2-221ENST00000555773 RGPD5Q99666 1765 aa16.49■□□□□ 0.23
SHMT2-221ENST00000555773 PHACTR3Q96KR7 559 aa16.49■□□□□ 0.23
SHMT2-221ENST00000555773 SPG7Q9UQ90 795 aa16.49■□□□□ 0.23
SHMT2-221ENST00000555773 EXOC5O00471 708 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms