RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 MAGEC2Q9UBF1 373 aaPredicted RBP12.71□□□□□ -0.38
CLIP1-209ENST00000537178 VIRMAQ69YN4 1812 aaKnown RBP12.7□□□□□ -0.38
CLIP1-209ENST00000537178 FSD1Q9BTV5 496 aa12.7□□□□□ -0.38
CLIP1-209ENST00000537178 GNAI3P08754 354 aa12.7□□□□□ -0.38
CLIP1-209ENST00000537178 TTLL5Q6EMB2 1281 aa12.7□□□□□ -0.38
CLIP1-209ENST00000537178 ERLIN2O94905 339 aa12.7□□□□□ -0.38
CLIP1-209ENST00000537178 SYCP1Q15431 976 aa12.7□□□□□ -0.38
CLIP1-209ENST00000537178 AXDND1Q5T1B0 1012 aaPredicted RBP12.7□□□□□ -0.38
CLIP1-209ENST00000537178 CAMSAP2Q08AD1 1489 aa12.7□□□□□ -0.38
CLIP1-209ENST00000537178 GPATCH8Q9UKJ3 1502 aaKnown RBP12.7□□□□□ -0.38
CLIP1-209ENST00000537178 SMC2O95347 1197 aa12.69□□□□□ -0.38
CLIP1-209ENST00000537178 LEKR1Q6ZMV7 388 aa12.69□□□□□ -0.38
CLIP1-209ENST00000537178 CCAR1Q8IX12 1150 aaKnown RBP12.69□□□□□ -0.38
CLIP1-209ENST00000537178 LUC7LQ9NQ29 371 aaKnown RBP12.69□□□□□ -0.38
CLIP1-209ENST00000537178 ABCC10Q5T3U5 1492 aa12.69□□□□□ -0.38
CLIP1-209ENST00000537178 IKQ13123 557 aaPredicted RBP12.69□□□□□ -0.38
CLIP1-209ENST00000537178 CDK5RAP3Q96JB5 506 aa12.69□□□□□ -0.38
CLIP1-209ENST00000537178 JMYQ8N9B5 988 aa12.69□□□□□ -0.38
CLIP1-209ENST00000537178 ZNHIT6Q9NWK9 470 aaKnown RBP12.69□□□□□ -0.38
CLIP1-209ENST00000537178 HIP1O00291 1037 aa12.69□□□□□ -0.38
CLIP1-209ENST00000537178 NEFHP12036 1026 aa12.69□□□□□ -0.38
CLIP1-209ENST00000537178 CT47B1P0C2W7 299 aaPredicted RBP12.68□□□□□ -0.38
CLIP1-209ENST00000537178 STAC3Q96MF2 364 aa12.68□□□□□ -0.38
CLIP1-209ENST00000537178 ZNF396Q96N95 335 aaPredicted RBP12.68□□□□□ -0.38
CLIP1-209ENST00000537178 FYB1O15117 783 aa12.68□□□□□ -0.38
CLIP1-209ENST00000537178 WWC2Q6AWC2 1192 aa12.68□□□□□ -0.38
CLIP1-209ENST00000537178 TRAK2O60296 914 aa12.68□□□□□ -0.38
CLIP1-209ENST00000537178 KIAA1107Q9UPP5 1409 aa12.68□□□□□ -0.38
CLIP1-209ENST00000537178 MYO5CQ9NQX4 1742 aa12.68□□□□□ -0.38
CLIP1-209ENST00000537178 ABCA8O94911 1581 aa12.68□□□□□ -0.38
CLIP1-209ENST00000537178 RNF17Q9BXT8 1623 aaKnown RBP12.67□□□□□ -0.38
CLIP1-209ENST00000537178 ATP2B1P20020 1258 aa12.67□□□□□ -0.38
CLIP1-209ENST00000537178 FMNL2Q96PY5 1086 aa12.67□□□□□ -0.38
CLIP1-209ENST00000537178 TSPY26PQ9H489 355 aa12.67□□□□□ -0.38
CLIP1-209ENST00000537178 SHANK2Q9UPX8 1470 aa12.67□□□□□ -0.38
CLIP1-209ENST00000537178 SLC3A2P08195 630 aaKnown RBP12.67□□□□□ -0.38
CLIP1-209ENST00000537178 GOLGA6L7A0A1B0GV03 622 aa12.67□□□□□ -0.38
CLIP1-209ENST00000537178 STK38Q15208 465 aa12.67□□□□□ -0.38
CLIP1-209ENST00000537178 CAVIN1Q6NZI2 390 aaKnown RBP12.67□□□□□ -0.38
CLIP1-209ENST00000537178 AIMP1Q12904 312 aaKnown RBP12.66□□□□□ -0.38
CLIP1-209ENST00000537178 ANKRD18AQ8IVF6 992 aa12.66□□□□□ -0.38
CLIP1-209ENST00000537178 INSRP06213 1382 aa12.66□□□□□ -0.38
CLIP1-209ENST00000537178 GOLGA6L10A6NI86 522 aa12.66□□□□□ -0.38
CLIP1-209ENST00000537178 NEK4P51957 841 aa12.66□□□□□ -0.38
CLIP1-209ENST00000537178 TXLNBQ8N3L3 684 aa12.66□□□□□ -0.38
CLIP1-209ENST00000537178 RABEP1Q15276 862 aa12.66□□□□□ -0.38
CLIP1-209ENST00000537178 TMEM132AQ24JP5 1023 aa12.66□□□□□ -0.38
CLIP1-209ENST00000537178 SURF6O75683 361 aaKnown RBP12.65□□□□□ -0.38
CLIP1-209ENST00000537178 KRT18P05783 430 aaKnown RBP12.65□□□□□ -0.38
CLIP1-209ENST00000537178 EIF4G3O43432 1585 aaKnown RBP12.65□□□□□ -0.38
CLIP1-209ENST00000537178 JPH4Q96JJ6 628 aa12.65□□□□□ -0.38
CLIP1-209ENST00000537178 MTMR7Q9Y216 660 aa12.65□□□□□ -0.38
CLIP1-209ENST00000537178 NLRP2Q9NX02 1062 aa12.64□□□□□ -0.39
CLIP1-209ENST00000537178 ZNF644Q9H582 1327 aaPredicted RBP12.64□□□□□ -0.39
CLIP1-209ENST00000537178 BRPF1P55201 1214 aaPredicted RBP12.64□□□□□ -0.39
CLIP1-209ENST00000537178 PANK1Q8TE04 598 aa12.64□□□□□ -0.39
CLIP1-209ENST00000537178 BCL11BQ9C0K0 894 aaPredicted RBP12.64□□□□□ -0.39
CLIP1-209ENST00000537178 PDCL3Q9H2J4 239 aa12.64□□□□□ -0.39
CLIP1-209ENST00000537178 KIAA0754O94854 1291 aa12.64□□□□□ -0.39
CLIP1-209ENST00000537178 SKIDA1Q1XH10 827 aa12.64□□□□□ -0.39
CLIP1-209ENST00000537178 HMOX1P09601 288 aa12.63□□□□□ -0.39
CLIP1-209ENST00000537178 STIM1Q13586 685 aa12.63□□□□□ -0.39
CLIP1-209ENST00000537178 ERC1Q8IUD2 1116 aa12.63□□□□□ -0.39
CLIP1-209ENST00000537178 DACH1Q9UI36 760 aa12.63□□□□□ -0.39
CLIP1-209ENST00000537178 PRDM15P57071 1507 aaPredicted RBP12.63□□□□□ -0.39
CLIP1-209ENST00000537178 CDC42BPBQ9Y5S2 1711 aa12.63□□□□□ -0.39
CLIP1-209ENST00000537178 ERLIN1O75477 346 aa12.63□□□□□ -0.39
CLIP1-209ENST00000537178 SEPT7Q16181 437 aaKnown RBP12.63□□□□□ -0.39
CLIP1-209ENST00000537178 CCDC30Q5VVM6 783 aa12.63□□□□□ -0.39
CLIP1-209ENST00000537178 FIBPO43427 364 aa12.63□□□□□ -0.39
CLIP1-209ENST00000537178 EZRP15311 586 aaKnown RBP12.63□□□□□ -0.39
CLIP1-209ENST00000537178 PPFIBP1Q86W92 1011 aa12.63□□□□□ -0.39
CLIP1-209ENST00000537178 PRPF40AO75400 957 aaKnown RBP12.63□□□□□ -0.39
CLIP1-209ENST00000537178 UNC13BO14795 1591 aa12.62□□□□□ -0.39
CLIP1-209ENST00000537178 ARHGEF5Q12774 1597 aa12.62□□□□□ -0.39
CLIP1-209ENST00000537178 PARD3Q8TEW0 1356 aa12.62□□□□□ -0.39
CLIP1-209ENST00000537178 CCDC192P0DO97 292 aa12.62□□□□□ -0.39
CLIP1-209ENST00000537178 BLMP54132 1417 aaPredicted RBP12.62□□□□□ -0.39
CLIP1-209ENST00000537178 SERPINC1P01008 464 aa12.62□□□□□ -0.39
CLIP1-209ENST00000537178 PLCD4Q9BRC7 762 aa12.62□□□□□ -0.39
CLIP1-209ENST00000537178 CCDC181Q5TID7 509 aa12.61□□□□□ -0.39
CLIP1-209ENST00000537178 MEX3CQ5U5Q3 659 aaKnown RBP12.61□□□□□ -0.39
CLIP1-209ENST00000537178 EIF3JO75822 258 aaKnown RBP12.61□□□□□ -0.39
CLIP1-209ENST00000537178 TRIM22Q8IYM9 498 aa12.61□□□□□ -0.39
CLIP1-209ENST00000537178 CCDC112Q8NEF3 446 aa12.61□□□□□ -0.39
CLIP1-209ENST00000537178 DNAJC2Q99543 621 aaKnown RBP12.61□□□□□ -0.39
CLIP1-209ENST00000537178 DEF6Q9H4E7 631 aa12.61□□□□□ -0.39
CLIP1-209ENST00000537178 AEBP1Q8IUX7 1158 aa12.61□□□□□ -0.39
CLIP1-209ENST00000537178 GAS2L2Q8NHY3 880 aa12.61□□□□□ -0.39
CLIP1-209ENST00000537178 PLA2R1Q13018 1463 aa12.61□□□□□ -0.39
CLIP1-209ENST00000537178 ANKRD1Q15327 319 aa12.6□□□□□ -0.39
CLIP1-209ENST00000537178 HSP90AB3PQ58FF7 597 aa12.6□□□□□ -0.39
CLIP1-209ENST00000537178 MYOM1P52179 1685 aa12.6□□□□□ -0.39
CLIP1-209ENST00000537178 ANKRD62A6NC57 917 aa12.6□□□□□ -0.39
CLIP1-209ENST00000537178 DNAJC5BQ9UF47 199 aa12.6□□□□□ -0.39
CLIP1-209ENST00000537178 TROQ12816 1431 aaPredicted RBP12.6□□□□□ -0.39
CLIP1-209ENST00000537178 GCC1Q96CN9 775 aa12.6□□□□□ -0.39
CLIP1-209ENST00000537178 GNL3LQ9NVN8 582 aaKnown RBP12.6□□□□□ -0.39
CLIP1-209ENST00000537178 GPRASP1Q5JY77 1395 aa12.59□□□□□ -0.39
CLIP1-209ENST00000537178 PER1O15534 1290 aaPredicted RBP12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 119.7 ms