RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 CDK12Q9NYV4 1490 aaPredicted RBP21.93■■□□□ 1.1
LSM1-204ENST00000522515 AXIN2Q9Y2T1 843 aa21.93■■□□□ 1.1
LSM1-204ENST00000522515 RTL1A6NKG5 1358 aa21.93■■□□□ 1.1
LSM1-204ENST00000522515 CCDC184Q52MB2 194 aa21.92■■□□□ 1.1
LSM1-204ENST00000522515 HSP90AB2PQ58FF8 381 aa21.92■■□□□ 1.1
LSM1-204ENST00000522515 ILDR1Q86SU0 546 aaPredicted RBP21.92■■□□□ 1.1
LSM1-204ENST00000522515 LMO7Q8WWI1 1683 aa21.91■■□□□ 1.1
LSM1-204ENST00000522515 COL14A1Q05707 1796 aaKnown RBP21.9■■□□□ 1.1
LSM1-204ENST00000522515 RGPD5Q99666 1765 aa21.9■■□□□ 1.1
LSM1-204ENST00000522515 ABCC6O95255 1503 aa21.9■■□□□ 1.1
LSM1-204ENST00000522515 INSRP06213 1382 aa21.89■■□□□ 1.09
LSM1-204ENST00000522515 CAMTA1Q9Y6Y1 1673 aa21.89■■□□□ 1.09
LSM1-204ENST00000522515 COL3A1P02461 1466 aaPredicted RBP21.88■■□□□ 1.09
LSM1-204ENST00000522515 BLMP54132 1417 aaPredicted RBP21.88■■□□□ 1.09
LSM1-204ENST00000522515 CFAP53Q96M91 514 aa21.88■■□□□ 1.09
LSM1-204ENST00000522515 C8orf37Q96NL8 207 aa21.87■■□□□ 1.09
LSM1-204ENST00000522515 MEX3CQ5U5Q3 659 aaKnown RBP21.87■■□□□ 1.09
LSM1-204ENST00000522515 BTG4Q9NY30 223 aa21.87■■□□□ 1.09
LSM1-204ENST00000522515 PLCH1Q4KWH8 1693 aa21.86■■□□□ 1.09
LSM1-204ENST00000522515 LTV1Q96GA3 475 aaPredicted RBP21.86■■□□□ 1.09
LSM1-204ENST00000522515 MRS2Q9HD23 443 aa21.86■■□□□ 1.09
LSM1-204ENST00000522515 CCER2I3L3R5 266 aa21.85■■□□□ 1.09
LSM1-204ENST00000522515 EIF4A2Q14240 407 aaKnown RBP21.85■■□□□ 1.09
LSM1-204ENST00000522515 NGLY1Q96IV0 654 aa21.85■■□□□ 1.09
LSM1-204ENST00000522515 DIAPH1O60610 1272 aaKnown RBP21.84■■□□□ 1.09
LSM1-204ENST00000522515 ANKRD24Q8TF21 1146 aa21.84■■□□□ 1.09
LSM1-204ENST00000522515 SLIT2O94813 1529 aa21.84■■□□□ 1.09
LSM1-204ENST00000522515 COL5A2P05997 1499 aaPredicted RBP21.84■■□□□ 1.09
LSM1-204ENST00000522515 ERBB3P21860 1342 aa21.83■■□□□ 1.09
LSM1-204ENST00000522515 IL13P35225 146 aa21.82■■□□□ 1.08
LSM1-204ENST00000522515 FNBP4Q8N3X1 1017 aaPredicted RBP21.82■■□□□ 1.08
LSM1-204ENST00000522515 NWD2Q9ULI1 1742 aa21.81■■□□□ 1.08
LSM1-204ENST00000522515 STRN4Q9NRL3 753 aa21.81■■□□□ 1.08
LSM1-204ENST00000522515 NRAPQ86VF7 1730 aa21.8■■□□□ 1.08
LSM1-204ENST00000522515 EVA1CP58658 441 aa21.8■■□□□ 1.08
LSM1-204ENST00000522515 BCL9LQ86UU0 1499 aa21.79■■□□□ 1.08
LSM1-204ENST00000522515 WDR17Q8IZU2 1322 aa21.79■■□□□ 1.08
LSM1-204ENST00000522515 CSB-PGBD3P0DP91 1061 aa21.78■■□□□ 1.08
LSM1-204ENST00000522515 RGPD2P0DJD1 1756 aa21.78■■□□□ 1.08
LSM1-204ENST00000522515 AFF2P51816 1311 aa21.78■■□□□ 1.08
LSM1-204ENST00000522515 U2SURPO15042 1029 aaKnown RBP21.78■■□□□ 1.08
LSM1-204ENST00000522515 LARP1Q6PKG0 1096 aaKnown RBP21.78■■□□□ 1.08
LSM1-204ENST00000522515 NBPF6Q5VWK0 638 aa21.77■■□□□ 1.08
LSM1-204ENST00000522515 NBPF4Q96M43 638 aa21.77■■□□□ 1.08
LSM1-204ENST00000522515 EYA1Q99502 592 aa21.77■■□□□ 1.08
LSM1-204ENST00000522515 USP21Q9UK80 565 aa21.77■■□□□ 1.08
LSM1-204ENST00000522515 NUDCQ9Y266 331 aa21.77■■□□□ 1.08
LSM1-204ENST00000522515 RGPD1P0DJD0 1748 aa21.76■■□□□ 1.07
LSM1-204ENST00000522515 UNC5CLQ8IV45 518 aa21.76■■□□□ 1.07
LSM1-204ENST00000522515 PNISRQ8TF01 805 aaKnown RBP21.76■■□□□ 1.07
LSM1-204ENST00000522515 FAM208AQ9UK61 1670 aaKnown RBP21.75■■□□□ 1.07
LSM1-204ENST00000522515 TOM1L2Q6ZVM7 507 aa21.75■■□□□ 1.07
LSM1-204ENST00000522515 NLRP2Q9NX02 1062 aa21.75■■□□□ 1.07
LSM1-204ENST00000522515 USHBP1Q8N6Y0 703 aa21.74■■□□□ 1.07
LSM1-204ENST00000522515 IGSF1Q8N6C5 1336 aa21.74■■□□□ 1.07
LSM1-204ENST00000522515 U2AF1L5P0DN76 240 aaPredicted RBP21.74■■□□□ 1.07
LSM1-204ENST00000522515 U2AF1Q01081 240 aaKnown RBP eCLIP21.74■■□□□ 1.07
LSM1-204ENST00000522515 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.73■■□□□ 1.07
LSM1-204ENST00000522515 CRB1P82279 1406 aa21.73■■□□□ 1.07
LSM1-204ENST00000522515 WDR43Q15061 677 aaKnown RBP eCLIP21.73■■□□□ 1.07
LSM1-204ENST00000522515 HMOX1P09601 288 aa21.71■■□□□ 1.07
LSM1-204ENST00000522515 AEBP1Q8IUX7 1158 aa21.71■■□□□ 1.07
LSM1-204ENST00000522515 ADAMTS8Q9UP79 889 aa21.71■■□□□ 1.07
LSM1-204ENST00000522515 SULT6B1Q6IMI4 303 aa21.7■■□□□ 1.06
LSM1-204ENST00000522515 FAM9BQ8IZU0 186 aa21.7■■□□□ 1.06
LSM1-204ENST00000522515 CARD10Q9BWT7 1032 aa21.7■■□□□ 1.06
LSM1-204ENST00000522515 NCAPD2Q15021 1401 aa21.7■■□□□ 1.06
LSM1-204ENST00000522515 VPS72Q15906 364 aa21.7■■□□□ 1.06
LSM1-204ENST00000522515 USP35Q9P2H5 1018 aa21.7■■□□□ 1.06
LSM1-204ENST00000522515 CCDC9Q9Y3X0 531 aaKnown RBP21.69■■□□□ 1.06
LSM1-204ENST00000522515 KDRP35968 1356 aa21.69■■□□□ 1.06
LSM1-204ENST00000522515 SPATA31A5Q5VU36 1347 aa21.68■■□□□ 1.06
LSM1-204ENST00000522515 SPATA31A7Q8IWB4 1347 aa21.68■■□□□ 1.06
LSM1-204ENST00000522515 SPATA31A1Q5TZJ5 1347 aa21.67■■□□□ 1.06
LSM1-204ENST00000522515 ATRNO75882 1429 aa21.66■■□□□ 1.06
LSM1-204ENST00000522515 RSPH6AQ9H0K4 717 aa21.66■■□□□ 1.06
LSM1-204ENST00000522515 FCHSD2O94868 740 aa21.65■■□□□ 1.06
LSM1-204ENST00000522515 QTRT2Q9H974 415 aaKnown RBP21.65■■□□□ 1.06
LSM1-204ENST00000522515 TRPC5Q9UL62 973 aaPredicted RBP21.65■■□□□ 1.06
LSM1-204ENST00000522515 ZNF772Q68DY9 489 aaPredicted RBP21.65■■□□□ 1.06
LSM1-204ENST00000522515 PRKAR2BP31323 418 aa21.64■■□□□ 1.05
LSM1-204ENST00000522515 TCP11L2Q8N4U5 519 aa21.64■■□□□ 1.05
LSM1-204ENST00000522515 RGS17Q9UGC6 210 aaPredicted RBP21.63■■□□□ 1.05
LSM1-204ENST00000522515 CCDC146Q8IYE0 955 aa21.62■■□□□ 1.05
LSM1-204ENST00000522515 GJD4Q96KN9 370 aaPredicted RBP21.62■■□□□ 1.05
LSM1-204ENST00000522515 GLI3P10071 1580 aa21.62■■□□□ 1.05
LSM1-204ENST00000522515 MEGF6O75095 1541 aa21.62■■□□□ 1.05
LSM1-204ENST00000522515 PLEKHF1Q96S99 279 aa21.61■■□□□ 1.05
LSM1-204ENST00000522515 PHF23Q9BUL5 403 aaPredicted RBP21.61■■□□□ 1.05
LSM1-204ENST00000522515 THRAP3Q9Y2W1 955 aaKnown RBP21.61■■□□□ 1.05
LSM1-204ENST00000522515 RAPGEF4Q8WZA2 1011 aa21.61■■□□□ 1.05
LSM1-204ENST00000522515 IL2RBP14784 551 aa21.6■■□□□ 1.05
LSM1-204ENST00000522515 WNK3Q9BYP7 1800 aa21.59■■□□□ 1.05
LSM1-204ENST00000522515 DISP2A7MBM2 1401 aa21.59■■□□□ 1.05
LSM1-204ENST00000522515 BARGINQ6ZT62 677 aa21.59■■□□□ 1.05
LSM1-204ENST00000522515 PHACTR3Q96KR7 559 aa21.59■■□□□ 1.05
LSM1-204ENST00000522515 PNNQ9H307 717 aaKnown RBP21.59■■□□□ 1.05
LSM1-204ENST00000522515 TATP17735 454 aaPredicted RBP21.58■■□□□ 1.05
LSM1-204ENST00000522515 FAM98CQ17RN3 349 aaKnown RBP21.58■■□□□ 1.05
LSM1-204ENST00000522515 RUNDC1Q96C34 613 aa21.57■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms