RNA–Protein interactions for RNA: ENST00000476391.5

HDAC1-206, Transcript of histone deacetylase 1, humanhuman

TSL 1 (best)

Gene HDAC1, Length 2,409 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-206ENST00000476391 SMC4Q9NTJ3 1288 aa16.81■□□□□ 0.28
HDAC1-206ENST00000476391 RRP7AQ9Y3A4 280 aaKnown RBP16.81■□□□□ 0.28
HDAC1-206ENST00000476391 NCBP1Q09161 790 aaKnown RBP16.8■□□□□ 0.28
HDAC1-206ENST00000476391 SCAF11Q99590 1463 aaKnown RBP16.8■□□□□ 0.28
HDAC1-206ENST00000476391 ADCY5O95622 1261 aa16.8■□□□□ 0.28
HDAC1-206ENST00000476391 CEP152O94986 1710 aa16.8■□□□□ 0.28
HDAC1-206ENST00000476391 ST18O60284 1047 aa16.79■□□□□ 0.28
HDAC1-206ENST00000476391 USP25Q9UHP3 1055 aa16.79■□□□□ 0.28
HDAC1-206ENST00000476391 TARBP1Q13395 1621 aaKnown RBP16.79■□□□□ 0.28
HDAC1-206ENST00000476391 CHRM1P11229 460 aaPredicted RBP16.79■□□□□ 0.28
HDAC1-206ENST00000476391 ATP10AO60312 1499 aa16.78■□□□□ 0.28
HDAC1-206ENST00000476391 KIAA0556O60303 1618 aa16.78■□□□□ 0.28
HDAC1-206ENST00000476391 ZGPATQ8N5A5 531 aaKnown RBP16.78■□□□□ 0.28
HDAC1-206ENST00000476391 PLB1Q6P1J6 1458 aa16.77■□□□□ 0.28
HDAC1-206ENST00000476391 KLHL34Q8N239 644 aa16.77■□□□□ 0.27
HDAC1-206ENST00000476391 TMEM57Q8N5G2 664 aa16.77■□□□□ 0.27
HDAC1-206ENST00000476391 KRT222Q8N1A0 295 aa16.76■□□□□ 0.27
HDAC1-206ENST00000476391 MADDQ8WXG6 1647 aa16.76■□□□□ 0.27
HDAC1-206ENST00000476391 UNC13BO14795 1591 aa16.76■□□□□ 0.27
HDAC1-206ENST00000476391 ARHGEF5Q12774 1597 aa16.76■□□□□ 0.27
HDAC1-206ENST00000476391 ANKRD45Q5TZF3 282 aa16.76■□□□□ 0.27
HDAC1-206ENST00000476391 CAPN2P17655 700 aa16.75■□□□□ 0.27
HDAC1-206ENST00000476391 MPNDQ8N594 471 aa16.75■□□□□ 0.27
HDAC1-206ENST00000476391 ADGRL1O94910 1474 aa16.75■□□□□ 0.27
HDAC1-206ENST00000476391 NOS1P29475 1434 aa16.75■□□□□ 0.27
HDAC1-206ENST00000476391 IPO8O15397 1037 aaKnown RBP16.75■□□□□ 0.27
HDAC1-206ENST00000476391 KIF18AQ8NI77 898 aa16.75■□□□□ 0.27
HDAC1-206ENST00000476391 USP26Q9BXU7 913 aa16.75■□□□□ 0.27
HDAC1-206ENST00000476391 RGS22Q8NE09 1264 aa16.74■□□□□ 0.27
HDAC1-206ENST00000476391 SSH1Q8WYL5 1049 aa16.74■□□□□ 0.27
HDAC1-206ENST00000476391 ZFP91Q96JP5 570 aaPredicted RBP16.74■□□□□ 0.27
HDAC1-206ENST00000476391 KDM4AO75164 1064 aa16.74■□□□□ 0.27
HDAC1-206ENST00000476391 NOB1Q9ULX3 412 aaKnown RBP16.74■□□□□ 0.27
HDAC1-206ENST00000476391 TTC37Q6PGP7 1564 aa16.73■□□□□ 0.27
HDAC1-206ENST00000476391 SMTNL1A8MU46 457 aa16.73■□□□□ 0.27
HDAC1-206ENST00000476391 BRD1O95696 1058 aa16.73■□□□□ 0.27
HDAC1-206ENST00000476391 ABCC11Q96J66 1382 aa16.73■□□□□ 0.27
HDAC1-206ENST00000476391 GOLGA6L6A8MZA4 724 aa16.72■□□□□ 0.27
HDAC1-206ENST00000476391 ADGRB2O60241 1585 aa16.72■□□□□ 0.27
HDAC1-206ENST00000476391 PYCARDQ9ULZ3 195 aa16.71■□□□□ 0.27
HDAC1-206ENST00000476391 DISP1Q96F81 1524 aa16.71■□□□□ 0.27
HDAC1-206ENST00000476391 MED14O60244 1454 aa16.71■□□□□ 0.27
HDAC1-206ENST00000476391 TRIM6-TRIM34B2RNG4 842 aa16.71■□□□□ 0.27
HDAC1-206ENST00000476391 CHAMP1Q96JM3 812 aa16.71■□□□□ 0.27
HDAC1-206ENST00000476391 CARD14Q9BXL6 1004 aa16.71■□□□□ 0.27
HDAC1-206ENST00000476391 TRIM34Q9BYJ4 488 aa16.71■□□□□ 0.27
HDAC1-206ENST00000476391 KCNF1Q9H3M0 494 aa16.71■□□□□ 0.27
HDAC1-206ENST00000476391 FAM53CQ9NYF3 392 aa16.71■□□□□ 0.27
HDAC1-206ENST00000476391 PPIP5K1Q6PFW1 1433 aa16.7■□□□□ 0.26
HDAC1-206ENST00000476391 IQGAP3Q86VI3 1631 aa16.7■□□□□ 0.26
HDAC1-206ENST00000476391 PPRC1Q5VV67 1664 aaKnown RBP16.7■□□□□ 0.26
HDAC1-206ENST00000476391 EXOSC9Q06265 439 aaKnown RBP16.7■□□□□ 0.26
HDAC1-206ENST00000476391 YY1AP1Q9H869 796 aa16.7■□□□□ 0.26
HDAC1-206ENST00000476391 PAXBP1Q9Y5B6 917 aa16.7■□□□□ 0.26
HDAC1-206ENST00000476391 CCDC183Q5T5S1 534 aa16.69■□□□□ 0.26
HDAC1-206ENST00000476391 CHMP4AQ9BY43 222 aa16.69■□□□□ 0.26
HDAC1-206ENST00000476391 IFT140Q96RY7 1462 aa16.69■□□□□ 0.26
HDAC1-206ENST00000476391 INTS3Q68E01 1043 aaKnown RBP16.69■□□□□ 0.26
HDAC1-206ENST00000476391 EFCC1Q9HA90 598 aa16.69■□□□□ 0.26
HDAC1-206ENST00000476391 DUOX2Q9NRD8 1548 aa16.69■□□□□ 0.26
HDAC1-206ENST00000476391 MAPK8IP2Q13387 824 aaPredicted RBP16.68■□□□□ 0.26
HDAC1-206ENST00000476391 ADAMTS12P58397 1594 aa16.68■□□□□ 0.26
HDAC1-206ENST00000476391 ZNF518AQ6AHZ1 1483 aa16.67■□□□□ 0.26
HDAC1-206ENST00000476391 GSPT1P15170 499 aaKnown RBP16.67■□□□□ 0.26
HDAC1-206ENST00000476391 ZNF397Q8NF99 534 aaPredicted RBP16.67■□□□□ 0.26
HDAC1-206ENST00000476391 HCLS1P14317 486 aaPredicted RBP16.67■□□□□ 0.26
HDAC1-206ENST00000476391 MCM2P49736 904 aa16.67■□□□□ 0.26
HDAC1-206ENST00000476391 TSR2Q969E8 191 aaKnown RBP16.67■□□□□ 0.26
HDAC1-206ENST00000476391 FEZ2Q9UHY8 353 aaPredicted RBP16.66■□□□□ 0.26
HDAC1-206ENST00000476391 MX1P20591 662 aa16.66■□□□□ 0.26
HDAC1-206ENST00000476391 SPHKAPQ2M3C7 1700 aa16.66■□□□□ 0.26
HDAC1-206ENST00000476391 ERICH4A6NGS2 130 aa16.65■□□□□ 0.26
HDAC1-206ENST00000476391 ALDH1L2Q3SY69 923 aa16.65■□□□□ 0.26
HDAC1-206ENST00000476391 TMEM87AQ8NBN3 555 aa16.65■□□□□ 0.26
HDAC1-206ENST00000476391 CCDC112Q8NEF3 446 aa16.65■□□□□ 0.26
HDAC1-206ENST00000476391 ERVK-7P63135 1459 aa16.65■□□□□ 0.26
HDAC1-206ENST00000476391 MORC1Q86VD1 984 aa16.65■□□□□ 0.26
HDAC1-206ENST00000476391 INTS4Q96HW7 963 aaKnown RBP16.65■□□□□ 0.26
HDAC1-206ENST00000476391 CFAP53Q96M91 514 aa16.65■□□□□ 0.26
HDAC1-206ENST00000476391 CYP2C19P33261 490 aa16.64■□□□□ 0.25
HDAC1-206ENST00000476391 FOXD4L5Q5VV16 416 aaPredicted RBP16.64■□□□□ 0.25
HDAC1-206ENST00000476391 CASC1Q6TDU7 716 aa16.64■□□□□ 0.25
HDAC1-206ENST00000476391 FOXD4L4Q8WXT5 416 aaPredicted RBP16.64■□□□□ 0.25
HDAC1-206ENST00000476391 IL16Q14005 1332 aa16.64■□□□□ 0.25
HDAC1-206ENST00000476391 KIAA1210Q9ULL0 1709 aa16.64■□□□□ 0.25
HDAC1-206ENST00000476391 ZBTB7BO15156 539 aaPredicted RBP16.64■□□□□ 0.25
HDAC1-206ENST00000476391 CUL4AQ13619 759 aa16.64■□□□□ 0.25
HDAC1-206ENST00000476391 TTC22Q5TAA0 569 aa16.64■□□□□ 0.25
HDAC1-206ENST00000476391 GEMIN8Q9NWZ8 242 aaKnown RBP16.63■□□□□ 0.25
HDAC1-206ENST00000476391 GADD45BO75293 160 aaPredicted RBP16.62■□□□□ 0.25
HDAC1-206ENST00000476391 REC8O95072 547 aa16.62■□□□□ 0.25
HDAC1-206ENST00000476391 USP48Q86UV5 1035 aa16.62■□□□□ 0.25
HDAC1-206ENST00000476391 PLEKHM2Q8IWE5 1019 aa16.62■□□□□ 0.25
HDAC1-206ENST00000476391 SECISBP2LQ93073 1101 aaKnown RBP16.62■□□□□ 0.25
HDAC1-206ENST00000476391 TMX3Q96JJ7 454 aa16.62■□□□□ 0.25
HDAC1-206ENST00000476391 BRPF1P55201 1214 aaPredicted RBP16.62■□□□□ 0.25
HDAC1-206ENST00000476391 SLFNL1Q499Z3 407 aa16.62■□□□□ 0.25
HDAC1-206ENST00000476391 MYOM2P54296 1465 aa16.62■□□□□ 0.25
HDAC1-206ENST00000476391 KIF1BPQ96EK5 621 aa16.61■□□□□ 0.25
HDAC1-206ENST00000476391 TNNT1P13805 278 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms