RNA–Protein interactions for RNA: ENST00000469778.1

SPTLC1-204, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 2

Gene SPTLC1, Length 490 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-204ENST00000469778 FLT4P35916 1363 aa17.1■□□□□ 0.33
SPTLC1-204ENST00000469778 ZBTB7CA1YPR0 619 aa17.09■□□□□ 0.33
SPTLC1-204ENST00000469778 HOXC9P31274 260 aa17.09■□□□□ 0.33
SPTLC1-204ENST00000469778 RRS1Q15050 365 aaKnown RBP17.09■□□□□ 0.33
SPTLC1-204ENST00000469778 RGS17Q9UGC6 210 aaPredicted RBP17.09■□□□□ 0.33
SPTLC1-204ENST00000469778 AXIN2Q9Y2T1 843 aa17.09■□□□□ 0.33
SPTLC1-204ENST00000469778 INSRP06213 1382 aa17.09■□□□□ 0.33
SPTLC1-204ENST00000469778 WDR17Q8IZU2 1322 aa17.08■□□□□ 0.32
SPTLC1-204ENST00000469778 TNNT2P45379 298 aaPredicted RBP17.08■□□□□ 0.32
SPTLC1-204ENST00000469778 RBM6P78332 1123 aaKnown RBP17.08■□□□□ 0.32
SPTLC1-204ENST00000469778 GJD4Q96KN9 370 aaPredicted RBP17.08■□□□□ 0.32
SPTLC1-204ENST00000469778 THRAP3Q9Y2W1 955 aaKnown RBP17.08■□□□□ 0.32
SPTLC1-204ENST00000469778 CAMTA1Q9Y6Y1 1673 aa17.07■□□□□ 0.32
SPTLC1-204ENST00000469778 LMO7Q8WWI1 1683 aa17.07■□□□□ 0.32
SPTLC1-204ENST00000469778 COL5A2P05997 1499 aaPredicted RBP17.06■□□□□ 0.32
SPTLC1-204ENST00000469778 ATRNO75882 1429 aa17.06■□□□□ 0.32
SPTLC1-204ENST00000469778 SMG6Q86US8 1419 aaKnown RBP17.06■□□□□ 0.32
SPTLC1-204ENST00000469778 PARD3Q8TEW0 1356 aa17.06■□□□□ 0.32
SPTLC1-204ENST00000469778 ERBB3P21860 1342 aa17.06■□□□□ 0.32
SPTLC1-204ENST00000469778 FBLN1P23142 703 aa17.06■□□□□ 0.32
SPTLC1-204ENST00000469778 RXRBP28702 533 aa17.06■□□□□ 0.32
SPTLC1-204ENST00000469778 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.06■□□□□ 0.32
SPTLC1-204ENST00000469778 COL18A1P39060 1754 aa17.05■□□□□ 0.32
SPTLC1-204ENST00000469778 SPATA31A5Q5VU36 1347 aa17.05■□□□□ 0.32
SPTLC1-204ENST00000469778 SPATA31A7Q8IWB4 1347 aa17.05■□□□□ 0.32
SPTLC1-204ENST00000469778 PPM1GO15355 546 aaPredicted RBP17.05■□□□□ 0.32
SPTLC1-204ENST00000469778 CSB-PGBD3P0DP91 1061 aa17.05■□□□□ 0.32
SPTLC1-204ENST00000469778 MTHFSP49914 203 aa17.05■□□□□ 0.32
SPTLC1-204ENST00000469778 ANKRD24Q8TF21 1146 aa17.05■□□□□ 0.32
SPTLC1-204ENST00000469778 CARD10Q9BWT7 1032 aa17.05■□□□□ 0.32
SPTLC1-204ENST00000469778 STRN4Q9NRL3 753 aa17.05■□□□□ 0.32
SPTLC1-204ENST00000469778 EMILIN1Q9Y6C2 1016 aa17.05■□□□□ 0.32
SPTLC1-204ENST00000469778 ONECUT3O60422 494 aaPredicted RBP17.04■□□□□ 0.32
SPTLC1-204ENST00000469778 HSP90AB2PQ58FF8 381 aa17.04■□□□□ 0.32
SPTLC1-204ENST00000469778 TOM1L2Q6ZVM7 507 aa17.04■□□□□ 0.32
SPTLC1-204ENST00000469778 CDCA7Q9BWT1 371 aaPredicted RBP17.04■□□□□ 0.32
SPTLC1-204ENST00000469778 CRB1P82279 1406 aa17.04■□□□□ 0.32
SPTLC1-204ENST00000469778 PLCH1Q4KWH8 1693 aa17.04■□□□□ 0.32
SPTLC1-204ENST00000469778 SPATA31A1Q5TZJ5 1347 aa17.03■□□□□ 0.32
SPTLC1-204ENST00000469778 LARP1Q6PKG0 1096 aaKnown RBP17.03■□□□□ 0.32
SPTLC1-204ENST00000469778 BARGINQ6ZT62 677 aa17.03■□□□□ 0.32
SPTLC1-204ENST00000469778 CFAP53Q96M91 514 aa17.03■□□□□ 0.32
SPTLC1-204ENST00000469778 CCDC9Q9Y3X0 531 aaKnown RBP17.03■□□□□ 0.32
SPTLC1-204ENST00000469778 LTN1O94822 1766 aa17.02■□□□□ 0.32
SPTLC1-204ENST00000469778 CDK12Q9NYV4 1490 aaPredicted RBP17.02■□□□□ 0.32
SPTLC1-204ENST00000469778 PPP2R1AP30153 589 aa17.02■□□□□ 0.32
SPTLC1-204ENST00000469778 POTEAQ6S8J7 498 aa17.02■□□□□ 0.32
SPTLC1-204ENST00000469778 TCP11L2Q8N4U5 519 aa17.02■□□□□ 0.32
SPTLC1-204ENST00000469778 MAP2P11137 1827 aaKnown RBP17.01■□□□□ 0.31
SPTLC1-204ENST00000469778 PRKRIP1Q9H875 184 aaPredicted RBP17.01■□□□□ 0.31
SPTLC1-204ENST00000469778 NLRP2Q9NX02 1062 aa17■□□□□ 0.31
SPTLC1-204ENST00000469778 MYBBP1AQ9BQG0 1328 aaKnown RBP16.99■□□□□ 0.31
SPTLC1-204ENST00000469778 NRAPQ86VF7 1730 aa16.99■□□□□ 0.31
SPTLC1-204ENST00000469778 ANP32CO43423 234 aa16.99■□□□□ 0.31
SPTLC1-204ENST00000469778 CNGB1Q14028 1251 aaPredicted RBP16.99■□□□□ 0.31
SPTLC1-204ENST00000469778 DIAPH1O60610 1272 aaKnown RBP16.98■□□□□ 0.31
SPTLC1-204ENST00000469778 LTV1Q96GA3 475 aaPredicted RBP16.98■□□□□ 0.31
SPTLC1-204ENST00000469778 EIF4A2Q14240 407 aaKnown RBP16.97■□□□□ 0.31
SPTLC1-204ENST00000469778 NUDCQ9Y266 331 aa16.97■□□□□ 0.31
SPTLC1-204ENST00000469778 PLEKHG2Q9H7P9 1386 aa16.97■□□□□ 0.31
SPTLC1-204ENST00000469778 IL13P35225 146 aa16.96■□□□□ 0.31
SPTLC1-204ENST00000469778 FAM208AQ9UK61 1670 aaKnown RBP16.95■□□□□ 0.3
SPTLC1-204ENST00000469778 NBPF6Q5VWK0 638 aa16.95■□□□□ 0.3
SPTLC1-204ENST00000469778 NBPF4Q96M43 638 aa16.95■□□□□ 0.3
SPTLC1-204ENST00000469778 USP35Q9P2H5 1018 aa16.95■□□□□ 0.3
SPTLC1-204ENST00000469778 PEAK1Q9H792 1746 aa16.95■□□□□ 0.3
SPTLC1-204ENST00000469778 IL2RBP14784 551 aa16.94■□□□□ 0.3
SPTLC1-204ENST00000469778 RGPD5Q99666 1765 aa16.93■□□□□ 0.3
SPTLC1-204ENST00000469778 FAM98CQ17RN3 349 aaKnown RBP16.93■□□□□ 0.3
SPTLC1-204ENST00000469778 RAPGEF4Q8WZA2 1011 aa16.93■□□□□ 0.3
SPTLC1-204ENST00000469778 EYA1Q99502 592 aa16.93■□□□□ 0.3
SPTLC1-204ENST00000469778 IGSF1Q8N6C5 1336 aa16.93■□□□□ 0.3
SPTLC1-204ENST00000469778 SEPT12Q8IYM1 358 aa16.92■□□□□ 0.3
SPTLC1-204ENST00000469778 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.92■□□□□ 0.3
SPTLC1-204ENST00000469778 GLI3P10071 1580 aa16.91■□□□□ 0.3
SPTLC1-204ENST00000469778 NCAPD2Q15021 1401 aa16.91■□□□□ 0.3
SPTLC1-204ENST00000469778 EXOC5O00471 708 aa16.91■□□□□ 0.3
SPTLC1-204ENST00000469778 TATP17735 454 aaPredicted RBP16.89■□□□□ 0.29
SPTLC1-204ENST00000469778 PDE3BQ13370 1112 aa16.89■□□□□ 0.29
SPTLC1-204ENST00000469778 DDB1Q16531 1140 aa16.89■□□□□ 0.29
SPTLC1-204ENST00000469778 PNNQ9H307 717 aaKnown RBP16.89■□□□□ 0.29
SPTLC1-204ENST00000469778 A0A0G2JS52 829 aa16.88■□□□□ 0.29
SPTLC1-204ENST00000469778 MYT1Q01538 1121 aa16.88■□□□□ 0.29
SPTLC1-204ENST00000469778 KDRP35968 1356 aa16.88■□□□□ 0.29
SPTLC1-204ENST00000469778 DISP2A7MBM2 1401 aa16.87■□□□□ 0.29
SPTLC1-204ENST00000469778 COL3A1P02461 1466 aaPredicted RBP16.87■□□□□ 0.29
SPTLC1-204ENST00000469778 FCHSD2O94868 740 aa16.87■□□□□ 0.29
SPTLC1-204ENST00000469778 AMOTQ4VCS5 1084 aa16.87■□□□□ 0.29
SPTLC1-204ENST00000469778 DIEXFQ68CQ4 756 aaKnown RBP16.87■□□□□ 0.29
SPTLC1-204ENST00000469778 SULT6B1Q6IMI4 303 aa16.87■□□□□ 0.29
SPTLC1-204ENST00000469778 KRT27Q7Z3Y8 459 aa16.86■□□□□ 0.29
SPTLC1-204ENST00000469778 SPG7Q9UQ90 795 aa16.86■□□□□ 0.29
SPTLC1-204ENST00000469778 U2SURPO15042 1029 aaKnown RBP16.85■□□□□ 0.29
SPTLC1-204ENST00000469778 ZCRB1Q8TBF4 217 aaKnown RBP16.85■□□□□ 0.29
SPTLC1-204ENST00000469778 RGS12O14924 1447 aa16.85■□□□□ 0.29
SPTLC1-204ENST00000469778 U2AF1L5P0DN76 240 aaPredicted RBP16.84■□□□□ 0.29
SPTLC1-204ENST00000469778 U2AF1Q01081 240 aaKnown RBP eCLIP16.84■□□□□ 0.29
SPTLC1-204ENST00000469778 PLEKHO1Q53GL0 409 aaPredicted RBP16.84■□□□□ 0.29
SPTLC1-204ENST00000469778 OVOS2A0A0G2JMS6 1433 aa16.84■□□□□ 0.29
SPTLC1-204ENST00000469778 THSD7AQ9UPZ6 1657 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms