RNA–Protein interactions for RNA: ENST00000341060.3

TDP2-201, Transcript of tyrosyl-DNA phosphodiesterase 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TDP2, Length 2,120 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP2-201ENST00000341060 CALD1Q05682 793 aaKnown RBP18.45■□□□□ 0.54
TDP2-201ENST00000341060 NME9Q86XW9 330 aa18.45■□□□□ 0.54
TDP2-201ENST00000341060 PHACTR3Q96KR7 559 aa18.45■□□□□ 0.54
TDP2-201ENST00000341060 RIMS1Q86UR5 1692 aaKnown RBP18.45■□□□□ 0.54
TDP2-201ENST00000341060 HMOX1P09601 288 aa18.44■□□□□ 0.54
TDP2-201ENST00000341060 GSE1Q14687 1217 aa18.44■□□□□ 0.54
TDP2-201ENST00000341060 TOPAZ1Q8N9V7 1692 aa18.44■□□□□ 0.54
TDP2-201ENST00000341060 TXNDC2Q86VQ3 553 aa18.43■□□□□ 0.54
TDP2-201ENST00000341060 NUDT16Q96DE0 195 aaKnown RBP18.43■□□□□ 0.54
TDP2-201ENST00000341060 CCDC61Q9Y6R9 512 aa18.43■□□□□ 0.54
TDP2-201ENST00000341060 PTCH1Q13635 1447 aa18.42■□□□□ 0.54
TDP2-201ENST00000341060 FRAT2O75474 233 aaPredicted RBP18.42■□□□□ 0.54
TDP2-201ENST00000341060 IFT57Q9NWB7 429 aa18.42■□□□□ 0.54
TDP2-201ENST00000341060 GNAI1P63096 354 aa18.41■□□□□ 0.54
TDP2-201ENST00000341060 COG3Q96JB2 828 aa18.41■□□□□ 0.54
TDP2-201ENST00000341060 PIK3R4Q99570 1358 aa18.41■□□□□ 0.54
TDP2-201ENST00000341060 HDGFP51858 240 aaKnown RBP18.41■□□□□ 0.54
TDP2-201ENST00000341060 ADAMTSL3P82987 1691 aa18.41■□□□□ 0.54
TDP2-201ENST00000341060 VAMP4O75379 141 aa18.4■□□□□ 0.54
TDP2-201ENST00000341060 ZNF853P0CG23 659 aa18.4■□□□□ 0.54
TDP2-201ENST00000341060 ARHGAP45Q92619 1136 aa18.4■□□□□ 0.54
TDP2-201ENST00000341060 NALCNQ8IZF0 1738 aa18.4■□□□□ 0.54
TDP2-201ENST00000341060 ZRANB1Q9UGI0 708 aa18.4■□□□□ 0.54
TDP2-201ENST00000341060 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.39■□□□□ 0.53
TDP2-201ENST00000341060 THUMPD2Q9BTF0 503 aaKnown RBP18.39■□□□□ 0.53
TDP2-201ENST00000341060 LMOD3Q0VAK6 560 aa18.38■□□□□ 0.53
TDP2-201ENST00000341060 NCKAP5LQ9HCH0 1330 aa18.38■□□□□ 0.53
TDP2-201ENST00000341060 TMEM2Q9UHN6 1383 aa18.38■□□□□ 0.53
TDP2-201ENST00000341060 NUCB1Q02818 461 aa18.38■□□□□ 0.53
TDP2-201ENST00000341060 MRPL50Q8N5N7 158 aaKnown RBP18.38■□□□□ 0.53
TDP2-201ENST00000341060 ZNF692Q9BU19 519 aaPredicted RBP18.38■□□□□ 0.53
TDP2-201ENST00000341060 MBIPQ9NS73 344 aa18.38■□□□□ 0.53
TDP2-201ENST00000341060 CHMP4BQ9H444 224 aaKnown RBP18.37■□□□□ 0.53
TDP2-201ENST00000341060 RRS1Q15050 365 aaKnown RBP18.37■□□□□ 0.53
TDP2-201ENST00000341060 TSPYL6Q8N831 410 aa18.37■□□□□ 0.53
TDP2-201ENST00000341060 TBC1D2Q9BYX2 928 aa18.37■□□□□ 0.53
TDP2-201ENST00000341060 ANTXR1Q9H6X2 564 aa18.37■□□□□ 0.53
TDP2-201ENST00000341060 PRR36Q9H6K5 1346 aa18.37■□□□□ 0.53
TDP2-201ENST00000341060 ADAMTS13Q76LX8 1427 aa18.36■□□□□ 0.53
TDP2-201ENST00000341060 CFAP44Q96MT7 982 aa18.36■□□□□ 0.53
TDP2-201ENST00000341060 RGPD1P0DJD0 1748 aa18.35■□□□□ 0.53
TDP2-201ENST00000341060 ROBO2Q9HCK4 1378 aa18.35■□□□□ 0.53
TDP2-201ENST00000341060 ABCC4O15439 1325 aa18.35■□□□□ 0.53
TDP2-201ENST00000341060 ZBTB7BO15156 539 aaPredicted RBP18.35■□□□□ 0.53
TDP2-201ENST00000341060 LTKP29376 864 aa18.35■□□□□ 0.53
TDP2-201ENST00000341060 SLKQ9H2G2 1235 aaPredicted RBP18.35■□□□□ 0.53
TDP2-201ENST00000341060 C22orf23Q9BZE7 217 aa18.34■□□□□ 0.53
TDP2-201ENST00000341060 FMN2Q9NZ56 1722 aa18.34■□□□□ 0.53
TDP2-201ENST00000341060 TWISTNBQ3B726 338 aaPredicted RBP18.34■□□□□ 0.53
TDP2-201ENST00000341060 CHD1LQ86WJ1 897 aa18.33■□□□□ 0.52
TDP2-201ENST00000341060 OVOS2A0A0J9YW53 1432 aa18.33■□□□□ 0.52
TDP2-201ENST00000341060 OVOS2Q6IE36 1432 aa18.33■□□□□ 0.52
TDP2-201ENST00000341060 PEAK1Q9H792 1746 aa18.32■□□□□ 0.52
TDP2-201ENST00000341060 MFAP1P55081 439 aaKnown RBP18.32■□□□□ 0.52
TDP2-201ENST00000341060 THEMISQ8N1K5 641 aaPredicted RBP18.32■□□□□ 0.52
TDP2-201ENST00000341060 GCC1Q96CN9 775 aa18.31■□□□□ 0.52
TDP2-201ENST00000341060 LNPKQ9C0E8 428 aa18.31■□□□□ 0.52
TDP2-201ENST00000341060 PLEKHG1Q9ULL1 1385 aa18.3■□□□□ 0.52
TDP2-201ENST00000341060 FAM83GA6ND36 823 aa18.3■□□□□ 0.52
TDP2-201ENST00000341060 EID1Q9Y6B2 187 aa18.3■□□□□ 0.52
TDP2-201ENST00000341060 ELL2O00472 640 aaPredicted RBP18.29■□□□□ 0.52
TDP2-201ENST00000341060 C8orf58Q8NAV2 365 aa18.29■□□□□ 0.52
TDP2-201ENST00000341060 TTC21BQ7Z4L5 1316 aa18.29■□□□□ 0.52
TDP2-201ENST00000341060 USP6P35125 1406 aa18.29■□□□□ 0.52
TDP2-201ENST00000341060 KIF24Q5T7B8 1368 aa18.28■□□□□ 0.52
TDP2-201ENST00000341060 EIF4A2Q14240 407 aaKnown RBP18.28■□□□□ 0.52
TDP2-201ENST00000341060 BMP2KLQ5H9B9 411 aa18.28■□□□□ 0.52
TDP2-201ENST00000341060 API5Q9BZZ5 524 aaKnown RBP18.28■□□□□ 0.52
TDP2-201ENST00000341060 ACEP12821 1306 aa18.27■□□□□ 0.52
TDP2-201ENST00000341060 CEP170BQ9Y4F5 1589 aaPredicted RBP18.27■□□□□ 0.52
TDP2-201ENST00000341060 PLEKHG3A1L390 1219 aa18.27■□□□□ 0.52
TDP2-201ENST00000341060 C1orf115Q9H7X2 142 aa18.26■□□□□ 0.51
TDP2-201ENST00000341060 RGPD8O14715 1765 aaPredicted RBP18.26■□□□□ 0.51
TDP2-201ENST00000341060 RBM25P49756 843 aaKnown RBP18.26■□□□□ 0.51
TDP2-201ENST00000341060 DCTN1Q14203 1278 aa18.26■□□□□ 0.51
TDP2-201ENST00000341060 IL27Q8NEV9 243 aa18.26■□□□□ 0.51
TDP2-201ENST00000341060 SLC26A8Q96RN1 970 aa18.26■□□□□ 0.51
TDP2-201ENST00000341060 USP31Q70CQ4 1352 aa18.25■□□□□ 0.51
TDP2-201ENST00000341060 AEBP1Q8IUX7 1158 aa18.25■□□□□ 0.51
TDP2-201ENST00000341060 SIRT2Q8IXJ6 389 aa18.25■□□□□ 0.51
TDP2-201ENST00000341060 SLIT1O75093 1534 aa18.25■□□□□ 0.51
TDP2-201ENST00000341060 ANKRD45Q5TZF3 282 aa18.25■□□□□ 0.51
TDP2-201ENST00000341060 SULT6B1Q6IMI4 303 aa18.25■□□□□ 0.51
TDP2-201ENST00000341060 SSH2Q76I76 1423 aa18.24■□□□□ 0.51
TDP2-201ENST00000341060 ARHGAP23Q9P227 1491 aa18.24■□□□□ 0.51
TDP2-201ENST00000341060 SETD1BQ9UPS6 1966 aaKnown RBP18.24■□□□□ 0.51
TDP2-201ENST00000341060 HAP1P54257 671 aaPredicted RBP18.23■□□□□ 0.51
TDP2-201ENST00000341060 PTPRUQ92729 1446 aa18.23■□□□□ 0.51
TDP2-201ENST00000341060 KIAA0232Q92628 1395 aa18.23■□□□□ 0.51
TDP2-201ENST00000341060 RGS12O14924 1447 aa18.22■□□□□ 0.51
TDP2-201ENST00000341060 NCOA3Q9Y6Q9 1424 aa18.22■□□□□ 0.51
TDP2-201ENST00000341060 CHL1O00533 1208 aa18.21■□□□□ 0.51
TDP2-201ENST00000341060 INTS3Q68E01 1043 aaKnown RBP18.2■□□□□ 0.5
TDP2-201ENST00000341060 HSCBQ8IWL3 235 aa18.2■□□□□ 0.5
TDP2-201ENST00000341060 ARHGEF10O15013 1369 aa18.19■□□□□ 0.5
TDP2-201ENST00000341060 TTC21AQ8NDW8 1320 aa18.19■□□□□ 0.5
TDP2-201ENST00000341060 HSP90AB2PQ58FF8 381 aa18.19■□□□□ 0.5
TDP2-201ENST00000341060 CHMP5Q9NZZ3 219 aa18.19■□□□□ 0.5
TDP2-201ENST00000341060 PIK3C2AO00443 1686 aa18.19■□□□□ 0.5
TDP2-201ENST00000341060 SPRYD3Q8NCJ5 442 aa18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms