RNA–Protein interactions for RNA: ENST00000309328.7

SSSCA1-201, Transcript of Sjogren syndrome/scleroderma autoantigen 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSSCA1, Length 698 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1-201ENST00000309328 RRS1Q15050 365 aaKnown RBP24.25■■□□□ 1.47
SSSCA1-201ENST00000309328 SMG6Q86US8 1419 aaKnown RBP24.25■■□□□ 1.47
SSSCA1-201ENST00000309328 HOXC9P31274 260 aa24.24■■□□□ 1.47
SSSCA1-201ENST00000309328 TNNT2P45379 298 aaPredicted RBP24.24■■□□□ 1.47
SSSCA1-201ENST00000309328 VPS72Q15906 364 aa24.24■■□□□ 1.47
SSSCA1-201ENST00000309328 POLKQ9UBT6 870 aa24.24■■□□□ 1.47
SSSCA1-201ENST00000309328 PLCH1Q4KWH8 1693 aa24.24■■□□□ 1.47
SSSCA1-201ENST00000309328 COL5A2P05997 1499 aaPredicted RBP24.23■■□□□ 1.47
SSSCA1-201ENST00000309328 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.23■■□□□ 1.47
SSSCA1-201ENST00000309328 CAMTA1Q9Y6Y1 1673 aa24.22■■□□□ 1.47
SSSCA1-201ENST00000309328 ATRNO75882 1429 aa24.22■■□□□ 1.47
SSSCA1-201ENST00000309328 INSRP06213 1382 aa24.22■■□□□ 1.47
SSSCA1-201ENST00000309328 PARD3Q8TEW0 1356 aa24.22■■□□□ 1.47
SSSCA1-201ENST00000309328 QTRT2Q9H974 415 aaKnown RBP24.21■■□□□ 1.47
SSSCA1-201ENST00000309328 AXIN2Q9Y2T1 843 aa24.21■■□□□ 1.47
SSSCA1-201ENST00000309328 ERBB3P21860 1342 aa24.2■■□□□ 1.46
SSSCA1-201ENST00000309328 WDR17Q8IZU2 1322 aa24.2■■□□□ 1.46
SSSCA1-201ENST00000309328 EMILIN1Q9Y6C2 1016 aa24.2■■□□□ 1.46
SSSCA1-201ENST00000309328 LTN1O94822 1766 aa24.2■■□□□ 1.46
SSSCA1-201ENST00000309328 CDK12Q9NYV4 1490 aaPredicted RBP24.19■■□□□ 1.46
SSSCA1-201ENST00000309328 COL18A1P39060 1754 aa24.19■■□□□ 1.46
SSSCA1-201ENST00000309328 STRN4Q9NRL3 753 aa24.19■■□□□ 1.46
SSSCA1-201ENST00000309328 PPM1GO15355 546 aaPredicted RBP24.18■■□□□ 1.46
SSSCA1-201ENST00000309328 CSB-PGBD3P0DP91 1061 aa24.18■■□□□ 1.46
SSSCA1-201ENST00000309328 FBLN1P23142 703 aa24.18■■□□□ 1.46
SSSCA1-201ENST00000309328 RGS17Q9UGC6 210 aaPredicted RBP24.18■■□□□ 1.46
SSSCA1-201ENST00000309328 RBM6P78332 1123 aaKnown RBP24.17■■□□□ 1.46
SSSCA1-201ENST00000309328 ILDR2Q71H61 639 aa24.17■■□□□ 1.46
SSSCA1-201ENST00000309328 ANKRD24Q8TF21 1146 aa24.17■■□□□ 1.46
SSSCA1-201ENST00000309328 THRAP3Q9Y2W1 955 aaKnown RBP24.17■■□□□ 1.46
SSSCA1-201ENST00000309328 NRAPQ86VF7 1730 aa24.17■■□□□ 1.46
SSSCA1-201ENST00000309328 CRB1P82279 1406 aa24.17■■□□□ 1.46
SSSCA1-201ENST00000309328 GJD4Q96KN9 370 aaPredicted RBP24.16■■□□□ 1.46
SSSCA1-201ENST00000309328 CCDC9Q9Y3X0 531 aaKnown RBP24.16■■□□□ 1.46
SSSCA1-201ENST00000309328 SPATA31A5Q5VU36 1347 aa24.15■■□□□ 1.46
SSSCA1-201ENST00000309328 SPATA31A7Q8IWB4 1347 aa24.15■■□□□ 1.46
SSSCA1-201ENST00000309328 MTHFSP49914 203 aa24.15■■□□□ 1.46
SSSCA1-201ENST00000309328 TOM1L2Q6ZVM7 507 aa24.15■■□□□ 1.46
SSSCA1-201ENST00000309328 RXRBP28702 533 aa24.14■■□□□ 1.45
SSSCA1-201ENST00000309328 CNGB1Q14028 1251 aaPredicted RBP24.14■■□□□ 1.45
SSSCA1-201ENST00000309328 HSP90AB2PQ58FF8 381 aa24.14■■□□□ 1.45
SSSCA1-201ENST00000309328 LARP1Q6PKG0 1096 aaKnown RBP24.14■■□□□ 1.45
SSSCA1-201ENST00000309328 CFAP53Q96M91 514 aa24.14■■□□□ 1.45
SSSCA1-201ENST00000309328 CARD10Q9BWT7 1032 aa24.14■■□□□ 1.45
SSSCA1-201ENST00000309328 SPATA31A1Q5TZJ5 1347 aa24.13■■□□□ 1.45
SSSCA1-201ENST00000309328 PPP2R1AP30153 589 aa24.13■■□□□ 1.45
SSSCA1-201ENST00000309328 TCP11L2Q8N4U5 519 aa24.12■■□□□ 1.45
SSSCA1-201ENST00000309328 PRKRIP1Q9H875 184 aaPredicted RBP24.12■■□□□ 1.45
SSSCA1-201ENST00000309328 MYBBP1AQ9BQG0 1328 aaKnown RBP24.11■■□□□ 1.45
SSSCA1-201ENST00000309328 ANP32CO43423 234 aa24.11■■□□□ 1.45
SSSCA1-201ENST00000309328 CDCA7Q9BWT1 371 aaPredicted RBP24.11■■□□□ 1.45
SSSCA1-201ENST00000309328 PEAK1Q9H792 1746 aa24.1■■□□□ 1.45
SSSCA1-201ENST00000309328 POTEAQ6S8J7 498 aa24.1■■□□□ 1.45
SSSCA1-201ENST00000309328 BARGINQ6ZT62 677 aa24.1■■□□□ 1.45
SSSCA1-201ENST00000309328 NLRP2Q9NX02 1062 aa24.1■■□□□ 1.45
SSSCA1-201ENST00000309328 FAM208AQ9UK61 1670 aaKnown RBP24.1■■□□□ 1.45
SSSCA1-201ENST00000309328 MAP2P11137 1827 aaKnown RBP24.1■■□□□ 1.45
SSSCA1-201ENST00000309328 LTV1Q96GA3 475 aaPredicted RBP24.08■■□□□ 1.45
SSSCA1-201ENST00000309328 ONECUT3O60422 494 aaPredicted RBP24.07■■□□□ 1.44
SSSCA1-201ENST00000309328 EIF4A2Q14240 407 aaKnown RBP24.06■■□□□ 1.44
SSSCA1-201ENST00000309328 DIAPH1O60610 1272 aaKnown RBP24.05■■□□□ 1.44
SSSCA1-201ENST00000309328 PLEKHG2Q9H7P9 1386 aa24.04■■□□□ 1.44
SSSCA1-201ENST00000309328 USP35Q9P2H5 1018 aa24.04■■□□□ 1.44
SSSCA1-201ENST00000309328 NUDCQ9Y266 331 aa24.04■■□□□ 1.44
SSSCA1-201ENST00000309328 GLI3P10071 1580 aa24.03■■□□□ 1.44
SSSCA1-201ENST00000309328 IL13P35225 146 aa24.02■■□□□ 1.44
SSSCA1-201ENST00000309328 NCAPD2Q15021 1401 aa24.01■■□□□ 1.43
SSSCA1-201ENST00000309328 RGPD5Q99666 1765 aa24.01■■□□□ 1.43
SSSCA1-201ENST00000309328 FAM98CQ17RN3 349 aaKnown RBP24.01■■□□□ 1.43
SSSCA1-201ENST00000309328 NBPF6Q5VWK0 638 aa24.01■■□□□ 1.43
SSSCA1-201ENST00000309328 NBPF4Q96M43 638 aa24.01■■□□□ 1.43
SSSCA1-201ENST00000309328 SOCS7O14512 581 aa24■■□□□ 1.43
SSSCA1-201ENST00000309328 IL2RBP14784 551 aa24■■□□□ 1.43
SSSCA1-201ENST00000309328 IGSF1Q8N6C5 1336 aa24■■□□□ 1.43
SSSCA1-201ENST00000309328 EYA1Q99502 592 aa23.99■■□□□ 1.43
SSSCA1-201ENST00000309328 COL3A1P02461 1466 aaPredicted RBP23.99■■□□□ 1.43
SSSCA1-201ENST00000309328 RAPGEF4Q8WZA2 1011 aa23.98■■□□□ 1.43
SSSCA1-201ENST00000309328 A0A0G2JS52 829 aa23.97■■□□□ 1.43
SSSCA1-201ENST00000309328 DISP2A7MBM2 1401 aa23.97■■□□□ 1.43
SSSCA1-201ENST00000309328 MYT1Q01538 1121 aa23.97■■□□□ 1.43
SSSCA1-201ENST00000309328 SEPT12Q8IYM1 358 aa23.97■■□□□ 1.43
SSSCA1-201ENST00000309328 KDRP35968 1356 aa23.95■■□□□ 1.42
SSSCA1-201ENST00000309328 RGS12O14924 1447 aa23.94■■□□□ 1.42
SSSCA1-201ENST00000309328 TATP17735 454 aaPredicted RBP23.94■■□□□ 1.42
SSSCA1-201ENST00000309328 THSD7AQ9UPZ6 1657 aa23.94■■□□□ 1.42
SSSCA1-201ENST00000309328 DDB1Q16531 1140 aa23.93■■□□□ 1.42
SSSCA1-201ENST00000309328 DIEXFQ68CQ4 756 aaKnown RBP23.93■■□□□ 1.42
SSSCA1-201ENST00000309328 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.92■■□□□ 1.42
SSSCA1-201ENST00000309328 EXOC5O00471 708 aa23.91■■□□□ 1.42
SSSCA1-201ENST00000309328 U2SURPO15042 1029 aaKnown RBP23.91■■□□□ 1.42
SSSCA1-201ENST00000309328 USHBP1Q8N6Y0 703 aa23.91■■□□□ 1.42
SSSCA1-201ENST00000309328 OVOS2A0A0G2JMS6 1433 aa23.91■■□□□ 1.42
SSSCA1-201ENST00000309328 PDE3BQ13370 1112 aa23.9■■□□□ 1.42
SSSCA1-201ENST00000309328 SULT6B1Q6IMI4 303 aa23.9■■□□□ 1.42
SSSCA1-201ENST00000309328 PNNQ9H307 717 aaKnown RBP23.9■■□□□ 1.42
SSSCA1-201ENST00000309328 TNS2Q63HR2 1409 aa23.9■■□□□ 1.42
SSSCA1-201ENST00000309328 RGPD1P0DJD0 1748 aa23.89■■□□□ 1.41
SSSCA1-201ENST00000309328 PARP4Q9UKK3 1724 aaKnown RBP23.89■■□□□ 1.41
SSSCA1-201ENST00000309328 AMOTQ4VCS5 1084 aa23.88■■□□□ 1.41
SSSCA1-201ENST00000309328 KRT27Q7Z3Y8 459 aa23.88■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms