RNA–Protein interactions for RNA: ENST00000302303.5

RFX3-201, Transcript of regulatory factor X3, humanhuman

TSL 1 (best) BASIC

Gene RFX3, Length 1,522 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-201ENST00000302303 NUTM2BA6NNL0 878 aaPredicted RBP12.83□□□□□ -0.36
RFX3-201ENST00000302303 NUTM2EB1AL46 878 aaPredicted RBP12.83□□□□□ -0.36
RFX3-201ENST00000302303 NUTM2AQ8IVF1 878 aaPredicted RBP12.83□□□□□ -0.36
RFX3-201ENST00000302303 CDK12Q9NYV4 1490 aaPredicted RBP12.82□□□□□ -0.36
RFX3-201ENST00000302303 PPM1GO15355 546 aaPredicted RBP12.82□□□□□ -0.36
RFX3-201ENST00000302303 ADAMTS2O95450 1211 aa12.82□□□□□ -0.36
RFX3-201ENST00000302303 IL13P35225 146 aa12.82□□□□□ -0.36
RFX3-201ENST00000302303 FLT4P35916 1363 aa12.82□□□□□ -0.36
RFX3-201ENST00000302303 CCER2I3L3R5 266 aa12.81□□□□□ -0.36
RFX3-201ENST00000302303 ILDR1Q86SU0 546 aaPredicted RBP12.81□□□□□ -0.36
RFX3-201ENST00000302303 RTL1A6NKG5 1358 aa12.81□□□□□ -0.36
RFX3-201ENST00000302303 AMPHP49418 695 aa12.8□□□□□ -0.36
RFX3-201ENST00000302303 EIF4A2Q14240 407 aaKnown RBP12.8□□□□□ -0.36
RFX3-201ENST00000302303 PRDM11Q9NQV5 511 aa12.8□□□□□ -0.36
RFX3-201ENST00000302303 RGPD5Q99666 1765 aa12.8□□□□□ -0.36
RFX3-201ENST00000302303 SLIT2O94813 1529 aa12.79□□□□□ -0.36
RFX3-201ENST00000302303 ABCC6O95255 1503 aa12.79□□□□□ -0.36
RFX3-201ENST00000302303 PNISRQ8TF01 805 aaKnown RBP12.79□□□□□ -0.36
RFX3-201ENST00000302303 BLMP54132 1417 aaPredicted RBP12.78□□□□□ -0.36
RFX3-201ENST00000302303 ZBTB7CA1YPR0 619 aa12.78□□□□□ -0.36
RFX3-201ENST00000302303 HAP1P54257 671 aaPredicted RBP12.78□□□□□ -0.36
RFX3-201ENST00000302303 FNBP4Q8N3X1 1017 aaPredicted RBP12.78□□□□□ -0.36
RFX3-201ENST00000302303 COL14A1Q05707 1796 aaKnown RBP12.78□□□□□ -0.36
RFX3-201ENST00000302303 COL5A2P05997 1499 aaPredicted RBP12.78□□□□□ -0.36
RFX3-201ENST00000302303 BCL9LQ86UU0 1499 aa12.78□□□□□ -0.36
RFX3-201ENST00000302303 ERBB3P21860 1342 aa12.78□□□□□ -0.36
RFX3-201ENST00000302303 RGPD1P0DJD0 1748 aa12.77□□□□□ -0.37
RFX3-201ENST00000302303 DIAPH1O60610 1272 aaKnown RBP12.77□□□□□ -0.37
RFX3-201ENST00000302303 ANKRD24Q8TF21 1146 aa12.77□□□□□ -0.37
RFX3-201ENST00000302303 MRS2Q9HD23 443 aa12.77□□□□□ -0.37
RFX3-201ENST00000302303 BTG4Q9NY30 223 aa12.77□□□□□ -0.37
RFX3-201ENST00000302303 NBPF6Q5VWK0 638 aa12.76□□□□□ -0.37
RFX3-201ENST00000302303 NBPF4Q96M43 638 aa12.76□□□□□ -0.37
RFX3-201ENST00000302303 EYA1Q99502 592 aa12.76□□□□□ -0.37
RFX3-201ENST00000302303 NCAPD2Q15021 1401 aa12.75□□□□□ -0.37
RFX3-201ENST00000302303 PLCH1Q4KWH8 1693 aa12.75□□□□□ -0.37
RFX3-201ENST00000302303 LTV1Q96GA3 475 aaPredicted RBP12.75□□□□□ -0.37
RFX3-201ENST00000302303 NRAPQ86VF7 1730 aa12.75□□□□□ -0.37
RFX3-201ENST00000302303 IGSF1Q8N6C5 1336 aa12.74□□□□□ -0.37
RFX3-201ENST00000302303 LARP1Q6PKG0 1096 aaKnown RBP12.74□□□□□ -0.37
RFX3-201ENST00000302303 PIAS4Q8N2W9 510 aaPredicted RBP12.74□□□□□ -0.37
RFX3-201ENST00000302303 CFAP53Q96M91 514 aa12.74□□□□□ -0.37
RFX3-201ENST00000302303 C8orf37Q96NL8 207 aa12.74□□□□□ -0.37
RFX3-201ENST00000302303 RGPD2P0DJD1 1756 aa12.74□□□□□ -0.37
RFX3-201ENST00000302303 WDR17Q8IZU2 1322 aa12.74□□□□□ -0.37
RFX3-201ENST00000302303 NGLY1Q96IV0 654 aa12.73□□□□□ -0.37
RFX3-201ENST00000302303 ADAMTS8Q9UP79 889 aa12.73□□□□□ -0.37
RFX3-201ENST00000302303 AEBP1Q8IUX7 1158 aa12.72□□□□□ -0.37
RFX3-201ENST00000302303 NWD2Q9ULI1 1742 aa12.72□□□□□ -0.37
RFX3-201ENST00000302303 KDRP35968 1356 aa12.72□□□□□ -0.37
RFX3-201ENST00000302303 UNC5CLQ8IV45 518 aa12.72□□□□□ -0.37
RFX3-201ENST00000302303 RGS17Q9UGC6 210 aaPredicted RBP12.72□□□□□ -0.37
RFX3-201ENST00000302303 FAM208AQ9UK61 1670 aaKnown RBP12.72□□□□□ -0.37
RFX3-201ENST00000302303 AFF2P51816 1311 aa12.71□□□□□ -0.37
RFX3-201ENST00000302303 USHBP1Q8N6Y0 703 aa12.71□□□□□ -0.38
RFX3-201ENST00000302303 PLEKHF1Q96S99 279 aa12.71□□□□□ -0.38
RFX3-201ENST00000302303 RSPH6AQ9H0K4 717 aa12.71□□□□□ -0.38
RFX3-201ENST00000302303 STRN4Q9NRL3 753 aa12.71□□□□□ -0.38
RFX3-201ENST00000302303 CARD10Q9BWT7 1032 aa12.7□□□□□ -0.38
RFX3-201ENST00000302303 CRB1P82279 1406 aa12.69□□□□□ -0.38
RFX3-201ENST00000302303 U2SURPO15042 1029 aaKnown RBP12.69□□□□□ -0.38
RFX3-201ENST00000302303 HMOX1P09601 288 aa12.69□□□□□ -0.38
RFX3-201ENST00000302303 U2AF1L5P0DN76 240 aaPredicted RBP12.69□□□□□ -0.38
RFX3-201ENST00000302303 EVA1CP58658 441 aa12.69□□□□□ -0.38
RFX3-201ENST00000302303 U2AF1Q01081 240 aaKnown RBP eCLIP12.69□□□□□ -0.38
RFX3-201ENST00000302303 SULT6B1Q6IMI4 303 aa12.69□□□□□ -0.38
RFX3-201ENST00000302303 USP21Q9UK80 565 aa12.69□□□□□ -0.38
RFX3-201ENST00000302303 SPATA31A1Q5TZJ5 1347 aa12.69□□□□□ -0.38
RFX3-201ENST00000302303 SPATA31A5Q5VU36 1347 aa12.69□□□□□ -0.38
RFX3-201ENST00000302303 SPATA31A7Q8IWB4 1347 aa12.69□□□□□ -0.38
RFX3-201ENST00000302303 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.69□□□□□ -0.38
RFX3-201ENST00000302303 VPS72Q15906 364 aa12.68□□□□□ -0.38
RFX3-201ENST00000302303 MEX3CQ5U5Q3 659 aaKnown RBP12.68□□□□□ -0.38
RFX3-201ENST00000302303 FAM9BQ8IZU0 186 aa12.68□□□□□ -0.38
RFX3-201ENST00000302303 NLRP2Q9NX02 1062 aa12.68□□□□□ -0.38
RFX3-201ENST00000302303 NUDCQ9Y266 331 aa12.68□□□□□ -0.38
RFX3-201ENST00000302303 FCHSD2O94868 740 aa12.67□□□□□ -0.38
RFX3-201ENST00000302303 TOM1L2Q6ZVM7 507 aa12.67□□□□□ -0.38
RFX3-201ENST00000302303 PHACTR3Q96KR7 559 aa12.67□□□□□ -0.38
RFX3-201ENST00000302303 ATRNO75882 1429 aa12.67□□□□□ -0.38
RFX3-201ENST00000302303 CSB-PGBD3P0DP91 1061 aa12.67□□□□□ -0.38
RFX3-201ENST00000302303 DISP2A7MBM2 1401 aa12.66□□□□□ -0.38
RFX3-201ENST00000302303 MEGF6O75095 1541 aa12.66□□□□□ -0.38
RFX3-201ENST00000302303 WDR43Q15061 677 aaKnown RBP eCLIP12.66□□□□□ -0.38
RFX3-201ENST00000302303 GLI3P10071 1580 aa12.65□□□□□ -0.38
RFX3-201ENST00000302303 PRKAR2BP31323 418 aa12.65□□□□□ -0.38
RFX3-201ENST00000302303 CCDC146Q8IYE0 955 aa12.65□□□□□ -0.38
RFX3-201ENST00000302303 ONECUT3O60422 494 aaPredicted RBP12.64□□□□□ -0.39
RFX3-201ENST00000302303 TCP11L2Q8N4U5 519 aa12.64□□□□□ -0.39
RFX3-201ENST00000302303 GJD4Q96KN9 370 aaPredicted RBP12.64□□□□□ -0.39
RFX3-201ENST00000302303 QTRT2Q9H974 415 aaKnown RBP12.64□□□□□ -0.39
RFX3-201ENST00000302303 USP35Q9P2H5 1018 aa12.64□□□□□ -0.39
RFX3-201ENST00000302303 BARGINQ6ZT62 677 aa12.63□□□□□ -0.39
RFX3-201ENST00000302303 POTEAQ6S8J7 498 aa12.62□□□□□ -0.39
RFX3-201ENST00000302303 RUNDC1Q96C34 613 aa12.62□□□□□ -0.39
RFX3-201ENST00000302303 TRPC5Q9UL62 973 aaPredicted RBP12.62□□□□□ -0.39
RFX3-201ENST00000302303 THRAP3Q9Y2W1 955 aaKnown RBP12.62□□□□□ -0.39
RFX3-201ENST00000302303 OVOS2A0A0G2JMS6 1433 aa12.62□□□□□ -0.39
RFX3-201ENST00000302303 MTHFSDQ2M296 383 aaKnown RBP12.62□□□□□ -0.39
RFX3-201ENST00000302303 SENP3-EIF4A1A0A087X0R7 540 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms