RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 COL18A1P39060 1754 aa17.43■□□□□ 0.38
SS18-202ENST00000269138 EVA1CP58658 441 aa17.42■□□□□ 0.38
SS18-202ENST00000269138 VPS72Q15906 364 aa17.42■□□□□ 0.38
SS18-202ENST00000269138 IP6K1Q92551 441 aa17.42■□□□□ 0.38
SS18-202ENST00000269138 EMILIN1Q9Y6C2 1016 aa17.42■□□□□ 0.38
SS18-202ENST00000269138 NWD2Q9ULI1 1742 aa17.41■□□□□ 0.38
SS18-202ENST00000269138 AMPHP49418 695 aa17.41■□□□□ 0.38
SS18-202ENST00000269138 LARP1Q6PKG0 1096 aaKnown RBP17.41■□□□□ 0.38
SS18-202ENST00000269138 CCDC9Q9Y3X0 531 aaKnown RBP17.41■□□□□ 0.38
SS18-202ENST00000269138 NPC1L1Q9UHC9 1359 aa17.4■□□□□ 0.38
SS18-202ENST00000269138 NRAPQ86VF7 1730 aa17.4■□□□□ 0.38
SS18-202ENST00000269138 HOXC9P31274 260 aa17.4■□□□□ 0.38
SS18-202ENST00000269138 GJD4Q96KN9 370 aaPredicted RBP17.4■□□□□ 0.38
SS18-202ENST00000269138 POLKQ9UBT6 870 aa17.4■□□□□ 0.38
SS18-202ENST00000269138 ANKRD26Q9UPS8 1709 aa17.4■□□□□ 0.38
SS18-202ENST00000269138 COL5A2P05997 1499 aaPredicted RBP17.4■□□□□ 0.38
SS18-202ENST00000269138 RXRBP28702 533 aa17.39■□□□□ 0.37
SS18-202ENST00000269138 LTN1O94822 1766 aa17.39■□□□□ 0.37
SS18-202ENST00000269138 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.38■□□□□ 0.37
SS18-202ENST00000269138 PPM1GO15355 546 aaPredicted RBP17.38■□□□□ 0.37
SS18-202ENST00000269138 RBM6P78332 1123 aaKnown RBP17.38■□□□□ 0.37
SS18-202ENST00000269138 ILDR2Q71H61 639 aa17.37■□□□□ 0.37
SS18-202ENST00000269138 LTV1Q96GA3 475 aaPredicted RBP17.37■□□□□ 0.37
SS18-202ENST00000269138 SPATA31A5Q5VU36 1347 aa17.37■□□□□ 0.37
SS18-202ENST00000269138 SPATA31A7Q8IWB4 1347 aa17.37■□□□□ 0.37
SS18-202ENST00000269138 HSP90AB2PQ58FF8 381 aa17.37■□□□□ 0.37
SS18-202ENST00000269138 ANKRD24Q8TF21 1146 aa17.37■□□□□ 0.37
SS18-202ENST00000269138 RGPD5Q99666 1765 aa17.36■□□□□ 0.37
SS18-202ENST00000269138 PEAK1Q9H792 1746 aa17.36■□□□□ 0.37
SS18-202ENST00000269138 CSB-PGBD3P0DP91 1061 aa17.36■□□□□ 0.37
SS18-202ENST00000269138 USP35Q9P2H5 1018 aa17.36■□□□□ 0.37
SS18-202ENST00000269138 ABCC6O95255 1503 aa17.36■□□□□ 0.37
SS18-202ENST00000269138 SPATA31A1Q5TZJ5 1347 aa17.35■□□□□ 0.37
SS18-202ENST00000269138 WDR17Q8IZU2 1322 aa17.35■□□□□ 0.37
SS18-202ENST00000269138 RTL1A6NKG5 1358 aa17.35■□□□□ 0.37
SS18-202ENST00000269138 TOM1L2Q6ZVM7 507 aa17.35■□□□□ 0.37
SS18-202ENST00000269138 GLI3P10071 1580 aa17.35■□□□□ 0.37
SS18-202ENST00000269138 ERBB3P21860 1342 aa17.35■□□□□ 0.37
SS18-202ENST00000269138 FLT4P35916 1363 aa17.34■□□□□ 0.37
SS18-202ENST00000269138 BLMP54132 1417 aaPredicted RBP17.34■□□□□ 0.37
SS18-202ENST00000269138 CRB1P82279 1406 aa17.33■□□□□ 0.36
SS18-202ENST00000269138 FAM98CQ17RN3 349 aaKnown RBP17.32■□□□□ 0.36
SS18-202ENST00000269138 NLRP2Q9NX02 1062 aa17.32■□□□□ 0.36
SS18-202ENST00000269138 INSRP06213 1382 aa17.32■□□□□ 0.36
SS18-202ENST00000269138 KIF24Q5T7B8 1368 aa17.32■□□□□ 0.36
SS18-202ENST00000269138 MAP2P11137 1827 aaKnown RBP17.32■□□□□ 0.36
SS18-202ENST00000269138 MTHFSP49914 203 aa17.31■□□□□ 0.36
SS18-202ENST00000269138 TCP11L2Q8N4U5 519 aa17.31■□□□□ 0.36
SS18-202ENST00000269138 CARD10Q9BWT7 1032 aa17.31■□□□□ 0.36
SS18-202ENST00000269138 SMG6Q86US8 1419 aaKnown RBP17.3■□□□□ 0.36
SS18-202ENST00000269138 ONECUT3O60422 494 aaPredicted RBP17.3■□□□□ 0.36
SS18-202ENST00000269138 RGS12O14924 1447 aa17.3■□□□□ 0.36
SS18-202ENST00000269138 PPP2R1AP30153 589 aa17.29■□□□□ 0.36
SS18-202ENST00000269138 SEPT12Q8IYM1 358 aa17.29■□□□□ 0.36
SS18-202ENST00000269138 EIF4A2Q14240 407 aaKnown RBP17.28■□□□□ 0.36
SS18-202ENST00000269138 NBPF6Q5VWK0 638 aa17.28■□□□□ 0.36
SS18-202ENST00000269138 NBPF4Q96M43 638 aa17.28■□□□□ 0.36
SS18-202ENST00000269138 PARD3Q8TEW0 1356 aa17.28■□□□□ 0.36
SS18-202ENST00000269138 BARGINQ6ZT62 677 aa17.27■□□□□ 0.36
SS18-202ENST00000269138 USHBP1Q8N6Y0 703 aa17.27■□□□□ 0.36
SS18-202ENST00000269138 CDK12Q9NYV4 1490 aaPredicted RBP17.27■□□□□ 0.36
SS18-202ENST00000269138 A0A0G2JS52 829 aa17.26■□□□□ 0.35
SS18-202ENST00000269138 MYT1Q01538 1121 aa17.26■□□□□ 0.35
SS18-202ENST00000269138 THRAP3Q9Y2W1 955 aaKnown RBP17.26■□□□□ 0.35
SS18-202ENST00000269138 RALBP1Q15311 655 aa17.24■□□□□ 0.35
SS18-202ENST00000269138 EYA1Q99502 592 aa17.24■□□□□ 0.35
SS18-202ENST00000269138 IL13P35225 146 aa17.23■□□□□ 0.35
SS18-202ENST00000269138 RGPD2P0DJD1 1756 aa17.23■□□□□ 0.35
SS18-202ENST00000269138 DISP2A7MBM2 1401 aa17.22■□□□□ 0.35
SS18-202ENST00000269138 THSD7AQ9UPZ6 1657 aa17.21■□□□□ 0.35
SS18-202ENST00000269138 PRKRIP1Q9H875 184 aaPredicted RBP17.21■□□□□ 0.35
SS18-202ENST00000269138 IL2RBP14784 551 aa17.21■□□□□ 0.34
SS18-202ENST00000269138 DIAPH1O60610 1272 aaKnown RBP17.2■□□□□ 0.34
SS18-202ENST00000269138 COL3A1P02461 1466 aaPredicted RBP17.19■□□□□ 0.34
SS18-202ENST00000269138 FAM182BQ5T319 152 aa17.19■□□□□ 0.34
SS18-202ENST00000269138 KRT27Q7Z3Y8 459 aa17.19■□□□□ 0.34
SS18-202ENST00000269138 CDCA7Q9BWT1 371 aaPredicted RBP17.19■□□□□ 0.34
SS18-202ENST00000269138 FAM208AQ9UK61 1670 aaKnown RBP17.19■□□□□ 0.34
SS18-202ENST00000269138 IGSF1Q8N6C5 1336 aa17.18■□□□□ 0.34
SS18-202ENST00000269138 AEBP1Q8IUX7 1158 aa17.18■□□□□ 0.34
SS18-202ENST00000269138 NCAPD2Q15021 1401 aa17.18■□□□□ 0.34
SS18-202ENST00000269138 MEGF6O75095 1541 aa17.17■□□□□ 0.34
SS18-202ENST00000269138 DDB1Q16531 1140 aa17.17■□□□□ 0.34
SS18-202ENST00000269138 CFAP53Q96M91 514 aa17.17■□□□□ 0.34
SS18-202ENST00000269138 BRWD3Q6RI45 1802 aa17.17■□□□□ 0.34
SS18-202ENST00000269138 MYBBP1AQ9BQG0 1328 aaKnown RBP17.17■□□□□ 0.34
SS18-202ENST00000269138 EXOC5O00471 708 aa17.16■□□□□ 0.34
SS18-202ENST00000269138 PDE3BQ13370 1112 aa17.16■□□□□ 0.34
SS18-202ENST00000269138 RAPGEF4Q8WZA2 1011 aa17.16■□□□□ 0.34
SS18-202ENST00000269138 WNK3Q9BYP7 1800 aa17.15■□□□□ 0.34
SS18-202ENST00000269138 TATP17735 454 aaPredicted RBP17.15■□□□□ 0.34
SS18-202ENST00000269138 SULT6B1Q6IMI4 303 aa17.15■□□□□ 0.34
SS18-202ENST00000269138 PARP4Q9UKK3 1724 aaKnown RBP17.14■□□□□ 0.33
SS18-202ENST00000269138 U2SURPO15042 1029 aaKnown RBP17.14■□□□□ 0.33
SS18-202ENST00000269138 MARCH10Q8NA82 808 aaPredicted RBP17.14■□□□□ 0.33
SS18-202ENST00000269138 LRRC37A3O60309 1634 aa17.13■□□□□ 0.33
SS18-202ENST00000269138 HMOX1P09601 288 aa17.13■□□□□ 0.33
SS18-202ENST00000269138 OVOS2A0A0G2JMS6 1433 aa17.13■□□□□ 0.33
SS18-202ENST00000269138 RGPD1P0DJD0 1748 aa17.12■□□□□ 0.33
SS18-202ENST00000269138 TNS2Q63HR2 1409 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms