RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 SUPT7LO94864 414 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 IRF8Q02556 426 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 ZNF155Q12901 538 aaPredicted RBP9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 GRAMD1BQ3KR37 738 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 BRMS1LQ5PSV4 323 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 FMO2Q99518 471 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 PDZD7Q9H5P4 517 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 ELAC1Q9H777 363 aaKnown RBP9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 TRHDEQ9UKU6 1024 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 NPC1O15118 1278 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 BCAT2O15382 392 aaPredicted RBP9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 FGFR3P22607 806 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 FNTBP49356 437 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 SMU1Q2TAY7 513 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 NEK7Q8TDX7 302 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 SLC22A18Q96BI1 424 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 SMAD5Q99717 465 aaKnown RBP9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 EBNA1BP2Q99848 306 aaKnown RBP9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 ZNF717Q9BY31 904 aaPredicted RBP9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 GPAMQ9HCL2 828 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 ZNF304Q9HCX3 659 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 CTIFO43310 598 aaKnown RBP9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 PAGE1O75459 146 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 SLC7A1P30825 629 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 HPCAL1P37235 193 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 GGCXP38435 758 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 SERPINH1P50454 418 aaKnown RBP9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 E2F1Q01094 437 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 COL9A3Q14050 684 aaPredicted RBP9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 DSG2Q14126 1118 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 SLC29A4Q7RTT9 530 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 HORMAD1Q86X24 394 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 HOMEZQ8IX15 550 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 FCRL2Q96LA5 508 aaPredicted RBP9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 GAREM1Q9H706 876 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 PAPOLBQ9NRJ5 636 aaKnown RBP9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 THSD1Q9NS62 852 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 A0A1W2PP55 124 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 SLC28A1O00337 649 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 MAGEA9P43362 315 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 SERPINB9P50453 376 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 CDK18Q07002 472 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 GALNT3Q14435 633 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 ZNF268Q14587 947 aaPredicted RBP9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 ZKSCAN8Q15776 578 aaPredicted RBP9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 PKDCCQ504Y2 493 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 FAM13CQ8NE31 585 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 OR4K17Q8NGC6 315 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 DLG3Q92796 817 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 AIF1LQ9BQI0 150 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 ADA2Q9NZK5 511 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 ARHGAP28Q9P2N2 729 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 EML1O00423 815 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 ZBTB39O15060 712 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 IGHEP01854 428 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 BMP4P12644 408 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 FDPSP14324 419 aaKnown RBP9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 PRLRP16471 622 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 CSKP41240 450 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 SSR2P43308 183 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 KCNK10P57789 538 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 EML3Q32P44 896 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 CMTM8Q8IZV2 173 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 FAM111AQ96PZ2 611 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 FAM118BQ9BPY3 351 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 KLC4Q9NSK0 619 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 OSER1Q9NX31 292 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 R4GN57 208 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 TMEM114B3SHH9 223 aa9.25□□□□□ -0.93
LIMCH1-202ENST00000381753 RNGTTO60942 597 aaKnown RBP9.25□□□□□ -0.93
LIMCH1-202ENST00000381753 IFNA14P01570 189 aa9.25□□□□□ -0.93
LIMCH1-202ENST00000381753 MMEP08473 750 aa9.25□□□□□ -0.93
LIMCH1-202ENST00000381753 FGRP09769 529 aa9.25□□□□□ -0.93
LIMCH1-202ENST00000381753 SLC9A1P19634 815 aa9.25□□□□□ -0.93
LIMCH1-202ENST00000381753 PIK3CGP48736 1102 aa9.25□□□□□ -0.93
LIMCH1-202ENST00000381753 RPS21P63220 83 aaKnown RBP9.25□□□□□ -0.93
LIMCH1-202ENST00000381753 CDH17Q12864 832 aa9.25□□□□□ -0.93
LIMCH1-202ENST00000381753 CHSY3Q70JA7 882 aa9.25□□□□□ -0.93
LIMCH1-202ENST00000381753 ZNF354BQ96LW1 612 aa9.25□□□□□ -0.93
LIMCH1-202ENST00000381753 TGM7Q96PF1 710 aa9.25□□□□□ -0.93
LIMCH1-202ENST00000381753 OSBPL8Q9BZF1 889 aa9.25□□□□□ -0.93
LIMCH1-202ENST00000381753 TTYH3Q9C0H2 523 aa9.25□□□□□ -0.93
LIMCH1-202ENST00000381753 SLC39A1Q9NY26 324 aa9.25□□□□□ -0.93
LIMCH1-202ENST00000381753 RAD54BQ9Y620 910 aa9.25□□□□□ -0.93
LIMCH1-202ENST00000381753 SQORQ9Y6N5 450 aa9.25□□□□□ -0.93
LIMCH1-202ENST00000381753 MYADML2A6NDP7 307 aa9.25□□□□□ -0.93
LIMCH1-202ENST00000381753 FXR1P51114 621 aaKnown RBP eCLIP9.25□□□□□ -0.93
LIMCH1-202ENST00000381753 CYP51A1Q16850 503 aa9.25□□□□□ -0.93
LIMCH1-202ENST00000381753 LRRC73Q5JTD7 316 aa9.25□□□□□ -0.93
LIMCH1-202ENST00000381753 GJB7Q6PEY0 223 aa9.25□□□□□ -0.93
LIMCH1-202ENST00000381753 DNAAF5Q86Y56 855 aa9.25□□□□□ -0.93
LIMCH1-202ENST00000381753 PLA2G15Q8NCC3 412 aa9.25□□□□□ -0.93
LIMCH1-202ENST00000381753 SEMA6BQ9H3T3 888 aa9.25□□□□□ -0.93
LIMCH1-202ENST00000381753 YY1AP1Q9H869 796 aa9.25□□□□□ -0.93
LIMCH1-202ENST00000381753 SGK2Q9HBY8 427 aa9.25□□□□□ -0.93
LIMCH1-202ENST00000381753 RNF14Q9UBS8 474 aa9.25□□□□□ -0.93
LIMCH1-202ENST00000381753 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.25□□□□□ -0.93
LIMCH1-202ENST00000381753 ADGRG1Q9Y653 693 aa9.25□□□□□ -0.93
LIMCH1-202ENST00000381753 NUMBLQ9Y6R0 609 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms