RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 DUX4L7P0CJ90 424 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 PRR23D2P0DMB1 279 aaPredicted RBP19.43■□□□□ 0.7
USP48-201ENST00000308271 TCF4P15884 667 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 SLC7A1P30825 629 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 IL2P60568 153 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 HPCAP84074 193 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 CXCL9Q07325 125 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 GRIK4Q16099 956 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 PDZK1Q5T2W1 519 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 FAM156AQ8NDB6 213 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 ROPN1LQ96C74 230 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 NXNL1Q96CM4 212 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 GPR88Q9GZN0 384 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 DUX4Q9UBX2 424 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 CXorf49A8MYA2 514 aaPredicted RBP19.42■□□□□ 0.7
USP48-201ENST00000308271 B4GALT5O43286 388 aa19.42■□□□□ 0.7
USP48-201ENST00000308271 ITM2AO43736 263 aa19.42■□□□□ 0.7
USP48-201ENST00000308271 PCNAP12004 261 aa19.42■□□□□ 0.7
USP48-201ENST00000308271 CDH13P55290 713 aa19.42■□□□□ 0.7
USP48-201ENST00000308271 KCNJ11Q14654 390 aa19.42■□□□□ 0.7
USP48-201ENST00000308271 MAPKAPK3Q16644 382 aa19.42■□□□□ 0.7
USP48-201ENST00000308271 ZNF605Q86T29 641 aa19.42■□□□□ 0.7
USP48-201ENST00000308271 ZNF540Q8NDQ6 660 aa19.42■□□□□ 0.7
USP48-201ENST00000308271 ZNF395Q9H8N7 513 aaPredicted RBP19.42■□□□□ 0.7
USP48-201ENST00000308271 FAM50BQ9Y247 325 aa19.42■□□□□ 0.7
USP48-201ENST00000308271 BTRCQ9Y297 605 aa19.42■□□□□ 0.7
USP48-201ENST00000308271 HOXB6P17509 224 aaKnown RBP19.42■□□□□ 0.7
USP48-201ENST00000308271 XRCC1P18887 633 aaPredicted RBP19.42■□□□□ 0.7
USP48-201ENST00000308271 AXLP30530 894 aa19.42■□□□□ 0.7
USP48-201ENST00000308271 EFEMP1Q12805 493 aa19.42■□□□□ 0.7
USP48-201ENST00000308271 TRAP1Q12931 704 aaKnown RBP19.42■□□□□ 0.7
USP48-201ENST00000308271 KRT33BQ14525 404 aa19.42■□□□□ 0.7
USP48-201ENST00000308271 FRMD7Q6ZUT3 714 aa19.42■□□□□ 0.7
USP48-201ENST00000308271 UNC5BQ8IZJ1 945 aa19.42■□□□□ 0.7
USP48-201ENST00000308271 LRRC52Q8N7C0 313 aa19.42■□□□□ 0.7
USP48-201ENST00000308271 DDX1Q92499 740 aaKnown RBP19.42■□□□□ 0.7
USP48-201ENST00000308271 ZNF516Q92618 1163 aa19.42■□□□□ 0.7
USP48-201ENST00000308271 TEKT5Q96M29 485 aa19.42■□□□□ 0.7
USP48-201ENST00000308271 B3GNT5Q9BYG0 378 aa19.42■□□□□ 0.7
USP48-201ENST00000308271 GIN1Q9NXP7 522 aa19.42■□□□□ 0.7
USP48-201ENST00000308271 CLDN25C9JDP6 229 aa19.42■□□□□ 0.7
USP48-201ENST00000308271 TK2O00142 265 aa19.42■□□□□ 0.7
USP48-201ENST00000308271 RECQL4O94761 1208 aa19.42■□□□□ 0.7
USP48-201ENST00000308271 EML3Q32P44 896 aa19.42■□□□□ 0.7
USP48-201ENST00000308271 SLC9B1Q4ZJI4 515 aa19.42■□□□□ 0.7
USP48-201ENST00000308271 CCNYL2Q5T2Q4 361 aa19.42■□□□□ 0.7
USP48-201ENST00000308271 C19orf60Q96EN9 201 aa19.42■□□□□ 0.7
USP48-201ENST00000308271 EPB41L1Q9H4G0 881 aa19.42■□□□□ 0.7
USP48-201ENST00000308271 FAM124BQ9H5Z6 455 aaPredicted RBP19.42■□□□□ 0.7
USP48-201ENST00000308271 IDH3BO43837 385 aa19.42■□□□□ 0.7
USP48-201ENST00000308271 FMO4P31512 558 aa19.42■□□□□ 0.7
USP48-201ENST00000308271 ARL2P36404 184 aa19.42■□□□□ 0.7
USP48-201ENST00000308271 MRPS5P82675 430 aaKnown RBP19.42■□□□□ 0.7
USP48-201ENST00000308271 ARHGEF7Q14155 803 aa19.42■□□□□ 0.7
USP48-201ENST00000308271 TREML1Q86YW5 311 aa19.42■□□□□ 0.7
USP48-201ENST00000308271 KCTD15Q96SI1 283 aaPredicted RBP19.42■□□□□ 0.7
USP48-201ENST00000308271 CHRAC1Q9NRG0 131 aa19.42■□□□□ 0.7
USP48-201ENST00000308271 ADPRHL2Q9NX46 363 aa19.42■□□□□ 0.7
USP48-201ENST00000308271 SIRPGQ9P1W8 387 aa19.42■□□□□ 0.7
USP48-201ENST00000308271 LOC100506127A0A0U1RQW1 187 aa19.41■□□□□ 0.7
USP48-201ENST00000308271 EFCAB10A6NFE3 127 aa19.41■□□□□ 0.7
USP48-201ENST00000308271 SLC22A3O75751 556 aa19.41■□□□□ 0.7
USP48-201ENST00000308271 IL1R2P27930 398 aa19.41■□□□□ 0.7
USP48-201ENST00000308271 SNAPC2Q13487 334 aa19.41■□□□□ 0.7
USP48-201ENST00000308271 PLPPR4Q7Z2D5 763 aa19.41■□□□□ 0.7
USP48-201ENST00000308271 PLEKHO2Q8TD55 490 aa19.41■□□□□ 0.7
USP48-201ENST00000308271 FBXO32Q969P5 355 aa19.41■□□□□ 0.7
USP48-201ENST00000308271 MFSD3Q96ES6 412 aa19.41■□□□□ 0.7
USP48-201ENST00000308271 MIPEPQ99797 713 aa19.41■□□□□ 0.7
USP48-201ENST00000308271 COQ7Q99807 217 aa19.41■□□□□ 0.7
USP48-201ENST00000308271 XPNPEP1Q9NQW7 623 aa19.41■□□□□ 0.7
USP48-201ENST00000308271 TIMM13Q9Y5L4 95 aaPredicted RBP19.41■□□□□ 0.7
USP48-201ENST00000308271 NPHS1O60500 1241 aa19.41■□□□□ 0.7
USP48-201ENST00000308271 FSTL1Q12841 308 aa19.41■□□□□ 0.7
USP48-201ENST00000308271 NETO2Q8NC67 525 aa19.41■□□□□ 0.7
USP48-201ENST00000308271 ASB9Q96DX5 294 aa19.41■□□□□ 0.7
USP48-201ENST00000308271 MCRS1Q96EZ8 462 aa19.41■□□□□ 0.7
USP48-201ENST00000308271 GPATCH1Q9BRR8 931 aaKnown RBP19.41■□□□□ 0.7
USP48-201ENST00000308271 KRT84Q9NSB2 600 aa19.41■□□□□ 0.7
USP48-201ENST00000308271 TTLL13PA6NNM8 815 aa19.41■□□□□ 0.7
USP48-201ENST00000308271 H3BSA7 217 aa19.41■□□□□ 0.7
USP48-201ENST00000308271 CPSF7Q8N684 471 aaKnown RBP19.41■□□□□ 0.7
USP48-201ENST00000308271 B3GALNT2Q8NCR0 500 aa19.41■□□□□ 0.7
USP48-201ENST00000308271 OR52K2Q8NGK3 314 aa19.41■□□□□ 0.7
USP48-201ENST00000308271 CHID1Q9BWS9 393 aa19.41■□□□□ 0.7
USP48-201ENST00000308271 CD320Q9NPF0 282 aa19.41■□□□□ 0.7
USP48-201ENST00000308271 ARFGEF2Q9Y6D5 1785 aa19.41■□□□□ 0.7
USP48-201ENST00000308271 FAM149AA5PLN7 773 aa19.41■□□□□ 0.7
USP48-201ENST00000308271 MGAT4DA6NG13 374 aa19.41■□□□□ 0.7
USP48-201ENST00000308271 IVDP26440 423 aa19.41■□□□□ 0.7
USP48-201ENST00000308271 SIX1Q15475 284 aaPredicted RBP19.41■□□□□ 0.7
USP48-201ENST00000308271 ZBED5Q49AG3 693 aa19.41■□□□□ 0.7
USP48-201ENST00000308271 TIGD2Q4W5G0 525 aa19.41■□□□□ 0.7
USP48-201ENST00000308271 TMEM126BQ8IUX1 230 aa19.41■□□□□ 0.7
USP48-201ENST00000308271 KIAA0319LQ8IZA0 1049 aa19.41■□□□□ 0.7
USP48-201ENST00000308271 TTC30BQ8N4P2 665 aa19.41■□□□□ 0.7
USP48-201ENST00000308271 ENKURQ8TC29 256 aa19.41■□□□□ 0.7
USP48-201ENST00000308271 PPP3R2Q96LZ3 170 aa19.41■□□□□ 0.7
USP48-201ENST00000308271 ACSS2Q9NR19 701 aa19.41■□□□□ 0.7
USP48-201ENST00000308271 CRNNQ9UBG3 495 aaPredicted RBP19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms