RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 KRT4P19013 534 aa8.79□□□□□ -1
LIMCH1-209ENST00000509277 ADRA1DP25100 572 aa8.79□□□□□ -1
LIMCH1-209ENST00000509277 TNFRSF8P28908 595 aa8.79□□□□□ -1
LIMCH1-209ENST00000509277 KPNA1P52294 538 aaPredicted RBP8.79□□□□□ -1
LIMCH1-209ENST00000509277 GDF10P55107 478 aa8.79□□□□□ -1
LIMCH1-209ENST00000509277 ZXDBP98169 803 aa8.79□□□□□ -1
LIMCH1-209ENST00000509277 TMEM259Q4ZIN3 620 aa8.79□□□□□ -1
LIMCH1-209ENST00000509277 CASC4Q6P4E1 433 aa8.79□□□□□ -1
LIMCH1-209ENST00000509277 TMEM150AQ86TG1 271 aa8.79□□□□□ -1
LIMCH1-209ENST00000509277 ATPAF2Q8N5M1 289 aa8.79□□□□□ -1
LIMCH1-209ENST00000509277 ZNF366Q8N895 744 aa8.79□□□□□ -1
LIMCH1-209ENST00000509277 CMASQ8NFW8 434 aaPredicted RBP8.79□□□□□ -1
LIMCH1-209ENST00000509277 RFWD2Q8NHY2 731 aa8.79□□□□□ -1
LIMCH1-209ENST00000509277 ACTRT1Q8TDG2 376 aa8.79□□□□□ -1
LIMCH1-209ENST00000509277 FGF13Q92913 245 aa8.79□□□□□ -1
LIMCH1-209ENST00000509277 BTN2A3PQ96KV6 586 aa8.79□□□□□ -1
LIMCH1-209ENST00000509277 BBS2Q9BXC9 721 aa8.79□□□□□ -1
LIMCH1-209ENST00000509277 SLC13A1Q9BZW2 595 aa8.79□□□□□ -1
LIMCH1-209ENST00000509277 RRN3Q9NYV6 651 aa8.79□□□□□ -1
LIMCH1-209ENST00000509277 VPS28Q9UK41 221 aa8.79□□□□□ -1
LIMCH1-209ENST00000509277 ANGPTL2Q9UKU9 493 aa8.79□□□□□ -1
LIMCH1-209ENST00000509277 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP8.78□□□□□ -1
LIMCH1-209ENST00000509277 LIN7AO14910 233 aaPredicted RBP8.78□□□□□ -1
LIMCH1-209ENST00000509277 RNASEH1O60930 286 aaKnown RBP8.78□□□□□ -1
LIMCH1-209ENST00000509277 USP12O75317 370 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 RHOCP08134 193 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 FOSL2P15408 326 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 PTPN4P29074 926 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 SLC6A4P31645 630 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 EIF2B2P49770 351 aaKnown RBP8.78□□□□□ -1
LIMCH1-209ENST00000509277 ZNF177Q13360 481 aaPredicted RBP8.78□□□□□ -1
LIMCH1-209ENST00000509277 POM121L1PQ3SYA9 428 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 PPP1R21Q6ZMI0 780 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 CYP4V2Q6ZWL3 525 aaPredicted RBP8.78□□□□□ -1
LIMCH1-209ENST00000509277 ZBED8Q8IZ13 594 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 DEFB123Q8N688 67 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 NPWQ8N729 165 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.78□□□□□ -1
LIMCH1-209ENST00000509277 CKAP2Q8WWK9 683 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 PGM2Q96G03 612 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 RUNDC3BQ96NL0 473 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 PRDM16Q9HAZ2 1276 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 EFR3BQ9Y2G0 817 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 SHROOM3Q8TF72 1996 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 LTBP2Q14767 1821 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 A0A0D9SEW6 157 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 STK25O00506 426 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 CLPTM1O96005 669 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 S100BP04271 92 aaPredicted RBP8.78□□□□□ -1
LIMCH1-209ENST00000509277 APRTP07741 180 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 TAC1P20366 129 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 ACVRL1P37023 503 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 TBL3Q12788 808 aaKnown RBP8.78□□□□□ -1
LIMCH1-209ENST00000509277 SLC10A2Q12908 348 aaPredicted RBP8.78□□□□□ -1
LIMCH1-209ENST00000509277 LBRQ14739 615 aaKnown RBP8.78□□□□□ -1
LIMCH1-209ENST00000509277 DUSP6Q16828 381 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 TMEM214Q6NUQ4 689 aaKnown RBP8.78□□□□□ -1
LIMCH1-209ENST00000509277 ALYREFQ86V81 257 aaKnown RBP8.78□□□□□ -1
LIMCH1-209ENST00000509277 PQLC3Q8N755 202 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 RBM15Q96T37 977 aaKnown RBP eCLIP8.78□□□□□ -1
LIMCH1-209ENST00000509277 TM6SF2Q9BZW4 377 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 CATSPERBQ9H7T0 1116 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 RAB6BQ9NRW1 208 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 MTMR10Q9NXD2 777 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 ASB3Q9Y575 518 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 TSC2P49815 1807 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 A0A1W2PPM1 405 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 C5orf67F2Z3F1 127 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 GLP2RO95838 553 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 CYBBP04839 570 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 GNAZP19086 355 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 GLDCP23378 1020 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 MTA1Q13330 715 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 C16orf87Q6PH81 154 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 SLC7A5P1Q8MH63 180 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 NAT14Q8WUY8 206 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 RUBCNQ92622 972 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 FAF2Q96CS3 445 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 FERMT1Q9BQL6 677 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 TRIM55Q9BYV6 548 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 SFXN1Q9H9B4 322 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 DTLQ9NZJ0 730 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 STK39Q9UEW8 545 aa8.78□□□□□ -1
LIMCH1-209ENST00000509277 NLRC5Q86WI3 1866 aa8.77□□□□□ -1
LIMCH1-209ENST00000509277 SPECC1L-ADORA2AF8WAN1 911 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 RAMP2O60895 175 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 C1RP00736 705 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 NCF2P19878 526 aaPredicted RBP8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 IL4RP24394 825 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 ARL1P40616 181 aaPredicted RBP8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 AP2B1P63010 937 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 OLIG2Q13516 323 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 POLD3Q15054 466 aaPredicted RBP8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 DPYSL2Q16555 572 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 BRMS1LQ5PSV4 323 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 LRRC38Q5VT99 294 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 RNF219Q5W0B1 726 aaPredicted RBP8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 NCBP2-AS2Q69YL0 99 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 ITPRIPL1Q6GPH6 555 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 NADSYN1Q6IA69 706 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms