RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 LMNAP02545 664 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 TCN2P20062 427 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 MYBPHQ13203 477 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 GRB10Q13322 594 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 CARD16Q5EG05 197 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 LY6G5CQ5SRR4 150 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 ACAD10Q6JQN1 1059 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 ANO5Q75V66 913 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 PIM3Q86V86 326 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 FBXO39Q8N4B4 442 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 TPCN2Q8NHX9 752 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 PIP4K2CQ8TBX8 421 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 TAPBPLQ9BX59 468 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 CATSPERZQ9NTU4 200 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 TAS2R13Q9NYV9 303 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 ZNF112Q9UJU3 913 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 CDC23Q9UJX2 597 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 DKKL1Q9UK85 242 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 RCOR1Q9UKL0 485 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 RPS6KL1Q9Y6S9 549 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 SOWAHDA6NJG2 315 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 A8MUA0 341 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 SGTAO43765 313 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 SYNGR4O95473 234 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 FESP07332 822 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 TYRP1P17643 537 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 VIPR2P41587 438 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 MRPS22P82650 360 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 C1orf61Q13536 156 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 DUPD1Q68J44 220 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 FAM43BQ6ZT52 329 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 CFAP206Q8IYR0 622 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 CEP19Q96LK0 163 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 FAM126AQ9BYI3 521 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 ABCG8Q9H221 673 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 FAM83DQ9H4H8 585 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 CNGB3Q9NQW8 809 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 IFT80Q9P2H3 777 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 CLCA3PQ9Y6N3 262 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 ERAL1O75616 437 aaKnown RBP9.27□□□□□ -0.92
LIMCH1-202ENST00000381753 ATG7O95352 703 aa9.27□□□□□ -0.92
LIMCH1-202ENST00000381753 PGDP52209 483 aa9.27□□□□□ -0.92
LIMCH1-202ENST00000381753 CTBP2P56545 445 aa9.27□□□□□ -0.92
LIMCH1-202ENST00000381753 ANKRD54Q6NXT1 300 aa9.27□□□□□ -0.92
LIMCH1-202ENST00000381753 SHQ1Q6PI26 577 aaKnown RBP9.27□□□□□ -0.92
LIMCH1-202ENST00000381753 BTNL9Q6UXG8 535 aa9.27□□□□□ -0.92
LIMCH1-202ENST00000381753 FAM20CQ8IXL6 584 aa9.27□□□□□ -0.92
LIMCH1-202ENST00000381753 GOT1L1Q8NHS2 421 aaPredicted RBP9.27□□□□□ -0.92
LIMCH1-202ENST00000381753 NKD1Q969G9 470 aa9.27□□□□□ -0.92
LIMCH1-202ENST00000381753 OTUB2Q96DC9 234 aa9.27□□□□□ -0.92
LIMCH1-202ENST00000381753 CEP41Q9BYV8 373 aa9.27□□□□□ -0.92
LIMCH1-202ENST00000381753 CCDC134Q9H6E4 229 aa9.27□□□□□ -0.92
LIMCH1-202ENST00000381753 EIF2B4Q9UI10 523 aaKnown RBP9.27□□□□□ -0.92
LIMCH1-202ENST00000381753 MUTYHQ9UIF7 546 aa9.27□□□□□ -0.92
LIMCH1-202ENST00000381753 ZNF232Q9UNY5 417 aa9.27□□□□□ -0.92
LIMCH1-202ENST00000381753 FCF1Q9Y324 198 aaKnown RBP9.27□□□□□ -0.92
LIMCH1-202ENST00000381753 RICTORQ6R327 1708 aa9.27□□□□□ -0.93
LIMCH1-202ENST00000381753 C2orf71A6NGG8 1288 aa9.27□□□□□ -0.93
LIMCH1-202ENST00000381753 SNAI1O95863 264 aaPredicted RBP9.27□□□□□ -0.93
LIMCH1-202ENST00000381753 CTSAP10619 480 aa9.27□□□□□ -0.93
LIMCH1-202ENST00000381753 MYOGP15173 224 aa9.27□□□□□ -0.93
LIMCH1-202ENST00000381753 NFKB1P19838 968 aa9.27□□□□□ -0.93
LIMCH1-202ENST00000381753 NT5EP21589 574 aa9.27□□□□□ -0.93
LIMCH1-202ENST00000381753 DMC1Q14565 340 aa9.27□□□□□ -0.93
LIMCH1-202ENST00000381753 MAPRE2Q15555 327 aa9.27□□□□□ -0.93
LIMCH1-202ENST00000381753 SARM1Q6SZW1 724 aa9.27□□□□□ -0.93
LIMCH1-202ENST00000381753 MRPL45Q9BRJ2 306 aaKnown RBP9.27□□□□□ -0.93
LIMCH1-202ENST00000381753 HERC2P3Q9BVR0 1158 aa9.27□□□□□ -0.93
LIMCH1-202ENST00000381753 ALG2Q9H553 416 aa9.27□□□□□ -0.93
LIMCH1-202ENST00000381753 ANKHQ9HCJ1 492 aa9.27□□□□□ -0.93
LIMCH1-202ENST00000381753 AGPAT4Q9NRZ5 378 aa9.27□□□□□ -0.93
LIMCH1-202ENST00000381753 PPARGC1AQ9UBK2 798 aaKnown RBP9.27□□□□□ -0.93
LIMCH1-202ENST00000381753 SNX24Q9Y343 169 aa9.27□□□□□ -0.93
LIMCH1-202ENST00000381753 LRP6O75581 1613 aa9.27□□□□□ -0.93
LIMCH1-202ENST00000381753 MROH2AA6NES4 1674 aa9.27□□□□□ -0.93
LIMCH1-202ENST00000381753 A0A087WUV0 522 aaPredicted RBP9.27□□□□□ -0.93
LIMCH1-202ENST00000381753 CLUP10909 449 aa9.27□□□□□ -0.93
LIMCH1-202ENST00000381753 UCHL3P15374 230 aa9.27□□□□□ -0.93
LIMCH1-202ENST00000381753 EEF1B2P24534 225 aaKnown RBP9.27□□□□□ -0.93
LIMCH1-202ENST00000381753 PRKG2Q13237 762 aa9.27□□□□□ -0.93
LIMCH1-202ENST00000381753 C2CD6Q53TS8 623 aa9.27□□□□□ -0.93
LIMCH1-202ENST00000381753 NUDCD3Q8IVD9 361 aa9.27□□□□□ -0.93
LIMCH1-202ENST00000381753 MAP4K3Q8IVH8 894 aa9.27□□□□□ -0.93
LIMCH1-202ENST00000381753 RNASE11Q8TAA1 199 aaKnown RBP9.27□□□□□ -0.93
LIMCH1-202ENST00000381753 TMEM74Q96NL1 305 aa9.27□□□□□ -0.93
LIMCH1-202ENST00000381753 GDE1Q9NZC3 331 aa9.27□□□□□ -0.93
LIMCH1-202ENST00000381753 COQ3Q9NZJ6 369 aa9.27□□□□□ -0.93
LIMCH1-202ENST00000381753 MPP6Q9NZW5 540 aa9.27□□□□□ -0.93
LIMCH1-202ENST00000381753 TMEM221A6NGB7 291 aa9.27□□□□□ -0.93
LIMCH1-202ENST00000381753 M0R296 226 aa9.27□□□□□ -0.93
LIMCH1-202ENST00000381753 DUOXA1Q1HG43 343 aa9.27□□□□□ -0.93
LIMCH1-202ENST00000381753 ABHD17BQ5VST6 288 aa9.27□□□□□ -0.93
LIMCH1-202ENST00000381753 GTPBP3Q969Y2 492 aaKnown RBP9.27□□□□□ -0.93
LIMCH1-202ENST00000381753 THTPAQ9BU02 230 aa9.27□□□□□ -0.93
LIMCH1-202ENST00000381753 SLC4A5Q9BY07 1137 aa9.27□□□□□ -0.93
LIMCH1-202ENST00000381753 PPP2R2CQ9Y2T4 447 aa9.27□□□□□ -0.93
LIMCH1-202ENST00000381753 ARIH1Q9Y4X5 557 aaPredicted RBP9.27□□□□□ -0.93
LIMCH1-202ENST00000381753 SEC23IPQ9Y6Y8 1000 aaKnown RBP9.27□□□□□ -0.93
LIMCH1-202ENST00000381753 CDC14CA4D256 554 aa9.26□□□□□ -0.93
LIMCH1-202ENST00000381753 XPO1O14980 1071 aaKnown RBP9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 80.4 ms