RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 EFCAB1Q9HAE3 211 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 RUVBL2Q9Y230 463 aaKnown RBP10.54□□□□□ -0.72
LIG1-220ENST00000601091 DTNAQ9Y4J8 743 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 PRR5-ARHGAP8B1AHC4 643 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 LILRB3O75022 631 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 USP12O75317 370 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 ANXA9O76027 345 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 USP1O94782 785 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 APEHP13798 732 aaKnown RBP10.54□□□□□ -0.72
LIG1-220ENST00000601091 PSMB4P28070 264 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 NOS2P35228 1153 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 TRIM23P36406 574 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 GABRB2P47870 512 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 GLRBP48167 497 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 NKX2-5P52952 324 aaPredicted RBP10.54□□□□□ -0.72
LIG1-220ENST00000601091 WNT7BP56706 349 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 HPCAP84074 193 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 ARHGAP8P85298 464 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 SLC25A3Q00325 362 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 SH3PXD2AQ5TCZ1 1133 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 TTC7BQ86TV6 843 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 CARNMT1Q8N4J0 409 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 DNAJB8Q8NHS0 232 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 TRPM4Q8TD43 1214 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 DENND1AQ8TEH3 1009 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 PIP5K1AQ99755 562 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 RNPEPQ9H4A4 650 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 PRDM12Q9H4Q4 367 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 SP140LQ9H930 580 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 STX18Q9P2W9 335 aaKnown RBP10.54□□□□□ -0.72
LIG1-220ENST00000601091 ERVK-19Q9WJR5 959 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 ACOT9Q9Y305 439 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 AAR2Q9Y312 384 aaKnown RBP10.54□□□□□ -0.72
LIG1-220ENST00000601091 SLCO1B7G3V0H7 640 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 MDM4O15151 490 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 RNGTTO60942 597 aaKnown RBP10.54□□□□□ -0.72
LIG1-220ENST00000601091 SIN3BO75182 1162 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 PEX11AO75192 247 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 TPSB2P20231 275 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 ST13P50502 369 aaKnown RBP10.54□□□□□ -0.72
LIG1-220ENST00000601091 MBTD1Q05BQ5 628 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 TPSAB1Q15661 275 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 CRTC1Q6UUV9 634 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 ULK2Q8IYT8 1036 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 ZNF565Q8N9K5 539 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 PCDH19Q8TAB3 1148 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 SGF29Q96ES7 293 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 CERS2Q96G23 380 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 PRR11Q96HE9 360 aaPredicted RBP10.54□□□□□ -0.72
LIG1-220ENST00000601091 LPIN3Q9BQK8 851 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 TSEN34Q9BSV6 310 aaKnown RBP10.54□□□□□ -0.72
LIG1-220ENST00000601091 EHD1Q9H4M9 534 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 UBP1Q9NZI7 540 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 PACSIN3Q9UKS6 424 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 HBS1LQ9Y450 684 aaKnown RBP10.54□□□□□ -0.72
LIG1-220ENST00000601091 WASF2Q9Y6W5 498 aa10.54□□□□□ -0.72
LIG1-220ENST00000601091 RECQL4O94761 1208 aa10.53□□□□□ -0.72
LIG1-220ENST00000601091 TCN1P20061 433 aaPredicted RBP10.53□□□□□ -0.72
LIG1-220ENST00000601091 PSMA3P25788 255 aa10.53□□□□□ -0.72
LIG1-220ENST00000601091 ABCE1P61221 599 aaKnown RBP10.53□□□□□ -0.72
LIG1-220ENST00000601091 POLR2GP62487 172 aaKnown RBP eCLIP10.53□□□□□ -0.72
LIG1-220ENST00000601091 SULT2A1Q06520 285 aa10.53□□□□□ -0.72
LIG1-220ENST00000601091 MOGSQ13724 837 aa10.53□□□□□ -0.72
LIG1-220ENST00000601091 SLC10A6Q3KNW5 377 aa10.53□□□□□ -0.72
LIG1-220ENST00000601091 ALG1LQ6GMV1 187 aa10.53□□□□□ -0.72
LIG1-220ENST00000601091 CGB2Q6NT52 195 aa10.53□□□□□ -0.72
LIG1-220ENST00000601091 LPCAT2Q7L5N7 544 aa10.53□□□□□ -0.72
LIG1-220ENST00000601091 GPC2Q8N158 579 aa10.53□□□□□ -0.72
LIG1-220ENST00000601091 RBM15BQ8NDT2 890 aaKnown RBP10.53□□□□□ -0.72
LIG1-220ENST00000601091 EME1Q96AY2 570 aa10.53□□□□□ -0.72
LIG1-220ENST00000601091 PPP1R2P1Q96PQ5 205 aa10.53□□□□□ -0.72
LIG1-220ENST00000601091 STN1Q9H668 368 aaKnown RBP10.53□□□□□ -0.72
LIG1-220ENST00000601091 NMRAL1Q9HBL8 299 aa10.53□□□□□ -0.72
LIG1-220ENST00000601091 RNF19AQ9NV58 838 aa10.53□□□□□ -0.72
LIG1-220ENST00000601091 HES2Q9Y543 173 aa10.53□□□□□ -0.72
LIG1-220ENST00000601091 TNRC6CQ9HCJ0 1690 aaKnown RBP10.53□□□□□ -0.72
LIG1-220ENST00000601091 TRPC5OSA6NMA1 111 aa10.53□□□□□ -0.72
LIG1-220ENST00000601091 OAS1P00973 400 aaKnown RBP10.53□□□□□ -0.72
LIG1-220ENST00000601091 IFNA14P01570 189 aa10.53□□□□□ -0.72
LIG1-220ENST00000601091 ACAT1P24752 427 aaKnown RBP10.53□□□□□ -0.72
LIG1-220ENST00000601091 GRM5P41594 1212 aa10.53□□□□□ -0.72
LIG1-220ENST00000601091 GPR85P60893 370 aa10.53□□□□□ -0.72
LIG1-220ENST00000601091 VBP1P61758 197 aa10.53□□□□□ -0.72
LIG1-220ENST00000601091 RPP30P78346 268 aaKnown RBP10.53□□□□□ -0.72
LIG1-220ENST00000601091 MAP3K10Q02779 954 aa10.53□□□□□ -0.72
LIG1-220ENST00000601091 DCTN2Q13561 401 aaKnown RBP10.53□□□□□ -0.72
LIG1-220ENST00000601091 TRIM25Q14258 630 aaKnown RBP10.53□□□□□ -0.72
LIG1-220ENST00000601091 TMEM192Q8IY95 271 aa10.53□□□□□ -0.72
LIG1-220ENST00000601091 TBC1D21Q8IYX1 336 aa10.53□□□□□ -0.72
LIG1-220ENST00000601091 LRRC52Q8N7C0 313 aa10.53□□□□□ -0.72
LIG1-220ENST00000601091 KYQ8NBH2 561 aa10.53□□□□□ -0.72
LIG1-220ENST00000601091 HSPBAP1Q96EW2 488 aa10.53□□□□□ -0.72
LIG1-220ENST00000601091 CSPG4P5Q96PW8 444 aa10.53□□□□□ -0.72
LIG1-220ENST00000601091 TWNKQ96RR1 684 aa10.53□□□□□ -0.72
LIG1-220ENST00000601091 SMAD5Q99717 465 aaKnown RBP10.53□□□□□ -0.72
LIG1-220ENST00000601091 MRPL45Q9BRJ2 306 aaKnown RBP10.53□□□□□ -0.72
LIG1-220ENST00000601091 FAM124BQ9H5Z6 455 aaPredicted RBP10.53□□□□□ -0.72
LIG1-220ENST00000601091 PDGFCQ9NRA1 345 aa10.53□□□□□ -0.72
LIG1-220ENST00000601091 MOCS1Q9NZB8 636 aa10.53□□□□□ -0.72
LIG1-220ENST00000601091 TRHDEQ9UKU6 1024 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms