RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 RFX6Q8HWS3 928 aa17.51■□□□□ 0.39
SHKBP1-212ENST00000596163 TP53INP2Q8IXH6 220 aa17.51■□□□□ 0.39
SHKBP1-212ENST00000596163 RCOR2Q8IZ40 523 aa17.51■□□□□ 0.39
SHKBP1-212ENST00000596163 TSEN2Q8NCE0 465 aaKnown RBP17.51■□□□□ 0.39
SHKBP1-212ENST00000596163 KIAA1524Q8TCG1 905 aa17.51■□□□□ 0.39
SHKBP1-212ENST00000596163 RNF25Q96BH1 459 aaPredicted RBP17.51■□□□□ 0.39
SHKBP1-212ENST00000596163 FEM1CQ96JP0 617 aa17.51■□□□□ 0.39
SHKBP1-212ENST00000596163 ZNF641Q96N77 438 aaPredicted RBP17.51■□□□□ 0.39
SHKBP1-212ENST00000596163 KLHL32Q96NJ5 620 aa17.51■□□□□ 0.39
SHKBP1-212ENST00000596163 ATP13A3Q9H7F0 1226 aa17.51■□□□□ 0.39
SHKBP1-212ENST00000596163 GRPEL1Q9HAV7 217 aa17.51■□□□□ 0.39
SHKBP1-212ENST00000596163 CAPN10Q9HC96 672 aa17.51■□□□□ 0.39
SHKBP1-212ENST00000596163 TMEM9BQ9NQ34 198 aa17.51■□□□□ 0.39
SHKBP1-212ENST00000596163 DKK3Q9UBP4 350 aa17.51■□□□□ 0.39
SHKBP1-212ENST00000596163 DMTF1Q9Y222 760 aa17.51■□□□□ 0.39
SHKBP1-212ENST00000596163 HYOU1Q9Y4L1 999 aa17.51■□□□□ 0.39
SHKBP1-212ENST00000596163 USP34Q70CQ2 3546 aa17.5■□□□□ 0.39
SHKBP1-212ENST00000596163 LNP1A1A4G5 178 aa17.5■□□□□ 0.39
SHKBP1-212ENST00000596163 RCCD1A6NED2 376 aa17.5■□□□□ 0.39
SHKBP1-212ENST00000596163 APOL1O14791 398 aa17.5■□□□□ 0.39
SHKBP1-212ENST00000596163 ARHGAP6O43182 974 aa17.5■□□□□ 0.39
SHKBP1-212ENST00000596163 AP1G1O43747 822 aa17.5■□□□□ 0.39
SHKBP1-212ENST00000596163 MFSD11O43934 449 aa17.5■□□□□ 0.39
SHKBP1-212ENST00000596163 RNGTTO60942 597 aaKnown RBP17.5■□□□□ 0.39
SHKBP1-212ENST00000596163 PCDH8O95206 1070 aa17.5■□□□□ 0.39
SHKBP1-212ENST00000596163 ZRANB2O95218 330 aaKnown RBP eCLIP17.5■□□□□ 0.39
SHKBP1-212ENST00000596163 ENGP17813 658 aa17.5■□□□□ 0.39
SHKBP1-212ENST00000596163 XPAP23025 273 aaPredicted RBP17.5■□□□□ 0.39
SHKBP1-212ENST00000596163 CCNCP24863 283 aa17.5■□□□□ 0.39
SHKBP1-212ENST00000596163 GKP32189 559 aa17.5■□□□□ 0.39
SHKBP1-212ENST00000596163 GARSP41250 739 aaKnown RBP17.5■□□□□ 0.39
SHKBP1-212ENST00000596163 AP1S1P61966 158 aa17.5■□□□□ 0.39
SHKBP1-212ENST00000596163 RACK1P63244 317 aaKnown RBP17.5■□□□□ 0.39
SHKBP1-212ENST00000596163 TFDP2Q14188 446 aa17.5■□□□□ 0.39
SHKBP1-212ENST00000596163 RSPO4Q2I0M5 234 aaPredicted RBP17.5■□□□□ 0.39
SHKBP1-212ENST00000596163 SETMARQ53H47 684 aaPredicted RBP17.5■□□□□ 0.39
SHKBP1-212ENST00000596163 STPG1Q5TH74 334 aa17.5■□□□□ 0.39
SHKBP1-212ENST00000596163 IL27RAQ6UWB1 636 aa17.5■□□□□ 0.39
SHKBP1-212ENST00000596163 BZW1Q7L1Q6 419 aaKnown RBP17.5■□□□□ 0.39
SHKBP1-212ENST00000596163 PARS2Q7L3T8 475 aaKnown RBP17.5■□□□□ 0.39
SHKBP1-212ENST00000596163 TTC7BQ86TV6 843 aa17.5■□□□□ 0.39
SHKBP1-212ENST00000596163 KATNAL2Q8IYT4 538 aa17.5■□□□□ 0.39
SHKBP1-212ENST00000596163 SYCE1Q8N0S2 351 aa17.5■□□□□ 0.39
SHKBP1-212ENST00000596163 PQLC3Q8N755 202 aa17.5■□□□□ 0.39
SHKBP1-212ENST00000596163 C1orf216Q8TAB5 229 aa17.5■□□□□ 0.39
SHKBP1-212ENST00000596163 RBM41Q96IZ5 413 aaKnown RBP17.5■□□□□ 0.39
SHKBP1-212ENST00000596163 EXOC2Q96KP1 924 aa17.5■□□□□ 0.39
SHKBP1-212ENST00000596163 TSGA13Q96PP4 275 aa17.5■□□□□ 0.39
SHKBP1-212ENST00000596163 LACRTQ9GZZ8 138 aa17.5■□□□□ 0.39
SHKBP1-212ENST00000596163 SUV39H2Q9H5I1 410 aa17.5■□□□□ 0.39
SHKBP1-212ENST00000596163 TM9SF3Q9HD45 589 aa17.5■□□□□ 0.39
SHKBP1-212ENST00000596163 CHD5Q8TDI0 1954 aa17.49■□□□□ 0.39
SHKBP1-212ENST00000596163 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP17.49■□□□□ 0.39
SHKBP1-212ENST00000596163 C3orf70A6NLC5 250 aaPredicted RBP17.49■□□□□ 0.39
SHKBP1-212ENST00000596163 C10orf142B7Z368 130 aa17.49■□□□□ 0.39
SHKBP1-212ENST00000596163 NEMP1O14524 444 aa17.49■□□□□ 0.39
SHKBP1-212ENST00000596163 MATN3O15232 486 aa17.49■□□□□ 0.39
SHKBP1-212ENST00000596163 LATO43561 262 aa17.49■□□□□ 0.39
SHKBP1-212ENST00000596163 TSPAN6O43657 245 aa17.49■□□□□ 0.39
SHKBP1-212ENST00000596163 GDF9O60383 454 aa17.49■□□□□ 0.39
SHKBP1-212ENST00000596163 NEBLO76041 1014 aa17.49■□□□□ 0.39
SHKBP1-212ENST00000596163 SERPINA4P29622 427 aa17.49■□□□□ 0.39
SHKBP1-212ENST00000596163 MMP13P45452 471 aa17.49■□□□□ 0.39
SHKBP1-212ENST00000596163 ID4P47928 161 aa17.49■□□□□ 0.39
SHKBP1-212ENST00000596163 SCNN1BP51168 640 aa17.49■□□□□ 0.39
SHKBP1-212ENST00000596163 TAS2R38P59533 333 aa17.49■□□□□ 0.39
SHKBP1-212ENST00000596163 BCL2L1Q07817 233 aa17.49■□□□□ 0.39
SHKBP1-212ENST00000596163 SLC10A7Q0GE19 358 aa17.49■□□□□ 0.39
SHKBP1-212ENST00000596163 HNRNPDQ14103 355 aaKnown RBP17.49■□□□□ 0.39
SHKBP1-212ENST00000596163 PUM1Q14671 1186 aaKnown RBP eCLIP17.49■□□□□ 0.39
SHKBP1-212ENST00000596163 RALGPS1Q5JS13 557 aa17.49■□□□□ 0.39
SHKBP1-212ENST00000596163 SLC9A4Q6AI14 798 aa17.49■□□□□ 0.39
SHKBP1-212ENST00000596163 KIAA1161Q6NSJ0 714 aa17.49■□□□□ 0.39
SHKBP1-212ENST00000596163 ADAT2Q7Z6V5 191 aaKnown RBP17.49■□□□□ 0.39
SHKBP1-212ENST00000596163 HORMAD1Q86X24 394 aa17.49■□□□□ 0.39
SHKBP1-212ENST00000596163 PAF1Q8N7H5 531 aa17.49■□□□□ 0.39
SHKBP1-212ENST00000596163 CCNYQ8ND76 341 aa17.49■□□□□ 0.39
SHKBP1-212ENST00000596163 FATE1Q969F0 183 aa17.49■□□□□ 0.39
SHKBP1-212ENST00000596163 RTKNQ9BST9 563 aa17.49■□□□□ 0.39
SHKBP1-212ENST00000596163 TSGA10Q9BZW7 698 aa17.49■□□□□ 0.39
SHKBP1-212ENST00000596163 AMACRQ9UHK6 382 aa17.49■□□□□ 0.39
SHKBP1-212ENST00000596163 SALL4Q9UJQ4 1053 aa17.49■□□□□ 0.39
SHKBP1-212ENST00000596163 FADS3Q9Y5Q0 445 aa17.49■□□□□ 0.39
SHKBP1-212ENST00000596163 DUSP10Q9Y6W6 482 aa17.49■□□□□ 0.39
SHKBP1-212ENST00000596163 ZNF292O60281 2723 aa17.48■□□□□ 0.39
SHKBP1-212ENST00000596163 A0A1W2PQ67 120 aa17.48■□□□□ 0.39
SHKBP1-212ENST00000596163 A0A1W2PQU0 124 aa17.48■□□□□ 0.39
SHKBP1-212ENST00000596163 CCDC66A2RUB6 948 aa17.48■□□□□ 0.39
SHKBP1-212ENST00000596163 RNF103O00237 685 aa17.48■□□□□ 0.39
SHKBP1-212ENST00000596163 SLC30A4O14863 429 aa17.48■□□□□ 0.39
SHKBP1-212ENST00000596163 INSIG1O15503 277 aa17.48■□□□□ 0.39
SHKBP1-212ENST00000596163 PEX11BO96011 259 aa17.48■□□□□ 0.39
SHKBP1-212ENST00000596163 CES1P23141 567 aa17.48■□□□□ 0.39
SHKBP1-212ENST00000596163 CETN2P41208 172 aa17.48■□□□□ 0.39
SHKBP1-212ENST00000596163 GRIA4P48058 902 aa17.48■□□□□ 0.39
SHKBP1-212ENST00000596163 C21orf59P57076 290 aa17.48■□□□□ 0.39
SHKBP1-212ENST00000596163 POLR2LP62875 67 aaKnown RBP17.48■□□□□ 0.39
SHKBP1-212ENST00000596163 RPS21P63220 83 aaKnown RBP17.48■□□□□ 0.39
SHKBP1-212ENST00000596163 PDK1Q15118 436 aa17.48■□□□□ 0.39
SHKBP1-212ENST00000596163 BRAT1Q6PJG6 821 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms