RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 OASLQ15646 514 aaKnown RBP15.15■□□□□ 0.02
NUP54-213ENST00000513352 TTC31Q49AM3 519 aaPredicted RBP15.15■□□□□ 0.02
NUP54-213ENST00000513352 DNTTIP2Q5QJE6 756 aaKnown RBP15.15■□□□□ 0.02
NUP54-213ENST00000513352 FAM46CQ5VWP2 391 aa15.15■□□□□ 0.02
NUP54-213ENST00000513352 ITPRIPL1Q6GPH6 555 aa15.15■□□□□ 0.02
NUP54-213ENST00000513352 ARHGEF18Q6ZSZ5 1173 aa15.15■□□□□ 0.02
NUP54-213ENST00000513352 CAMKK1Q8N5S9 505 aa15.15■□□□□ 0.02
NUP54-213ENST00000513352 CNTD1Q8N815 330 aa15.15■□□□□ 0.02
NUP54-213ENST00000513352 CCDC110Q8TBZ0 833 aa15.15■□□□□ 0.02
NUP54-213ENST00000513352 PDCD6IPQ8WUM4 868 aaKnown RBP15.15■□□□□ 0.02
NUP54-213ENST00000513352 PPP1R16AQ96I34 528 aa15.15■□□□□ 0.02
NUP54-213ENST00000513352 LRFN3Q9BTN0 628 aa15.15■□□□□ 0.02
NUP54-213ENST00000513352 NOD2Q9HC29 1040 aa15.15■□□□□ 0.02
NUP54-213ENST00000513352 GLOD4Q9HC38 313 aa15.15■□□□□ 0.02
NUP54-213ENST00000513352 CD248Q9HCU0 757 aa15.15■□□□□ 0.02
NUP54-213ENST00000513352 RNF14Q9UBS8 474 aa15.15■□□□□ 0.02
NUP54-213ENST00000513352 TRHDEQ9UKU6 1024 aa15.15■□□□□ 0.02
NUP54-213ENST00000513352 ATP8A1Q9Y2Q0 1164 aa15.15■□□□□ 0.02
NUP54-213ENST00000513352 WASF2Q9Y6W5 498 aa15.15■□□□□ 0.02
NUP54-213ENST00000513352 AXIN1O15169 862 aa15.14■□□□□ 0.01
NUP54-213ENST00000513352 PAPSS2O95340 614 aaPredicted RBP15.14■□□□□ 0.01
NUP54-213ENST00000513352 ITGAVP06756 1048 aa15.14■□□□□ 0.01
NUP54-213ENST00000513352 SERPINA4P29622 427 aa15.14■□□□□ 0.01
NUP54-213ENST00000513352 CD86P42081 329 aa15.14■□□□□ 0.01
NUP54-213ENST00000513352 CSNK1DP48730 415 aa15.14■□□□□ 0.01
NUP54-213ENST00000513352 FNTBP49356 437 aa15.14■□□□□ 0.01
NUP54-213ENST00000513352 METAP1P53582 386 aa15.14■□□□□ 0.01
NUP54-213ENST00000513352 GDF10P55107 478 aa15.14■□□□□ 0.01
NUP54-213ENST00000513352 CKAP4Q07065 602 aaKnown RBP15.14■□□□□ 0.01
NUP54-213ENST00000513352 GRM3Q14832 879 aa15.14■□□□□ 0.01
NUP54-213ENST00000513352 ANGPT1Q15389 498 aa15.14■□□□□ 0.01
NUP54-213ENST00000513352 ANKRD20A2Q5SQ80 823 aa15.14■□□□□ 0.01
NUP54-213ENST00000513352 ANKRD20A1Q5TYW2 823 aa15.14■□□□□ 0.01
NUP54-213ENST00000513352 ANKRD20A3Q5VUR7 823 aa15.14■□□□□ 0.01
NUP54-213ENST00000513352 DRICH1Q6PGQ1 229 aaPredicted RBP15.14■□□□□ 0.01
NUP54-213ENST00000513352 GDPD4Q6W3E5 623 aa15.14■□□□□ 0.01
NUP54-213ENST00000513352 MAMSTRQ6ZN01 415 aa15.14■□□□□ 0.01
NUP54-213ENST00000513352 FAM124AQ86V42 546 aa15.14■□□□□ 0.01
NUP54-213ENST00000513352 KLHL7Q8IXQ5 586 aa15.14■□□□□ 0.01
NUP54-213ENST00000513352 TAB3Q8N5C8 712 aaPredicted RBP15.14■□□□□ 0.01
NUP54-213ENST00000513352 TMIEQ8NEW7 156 aa15.14■□□□□ 0.01
NUP54-213ENST00000513352 TEKT5Q96M29 485 aa15.14■□□□□ 0.01
NUP54-213ENST00000513352 SPATA13Q96N96 652 aa15.14■□□□□ 0.01
NUP54-213ENST00000513352 KLHL32Q96NJ5 620 aa15.14■□□□□ 0.01
NUP54-213ENST00000513352 TUBGCP5Q96RT8 1024 aa15.14■□□□□ 0.01
NUP54-213ENST00000513352 RBM15Q96T37 977 aaKnown RBP eCLIP15.14■□□□□ 0.013e-11■■■■■ 43.2
NUP54-213ENST00000513352 OMDQ99983 421 aa15.14■□□□□ 0.01
NUP54-213ENST00000513352 OSBPL1AQ9BXW6 950 aa15.14■□□□□ 0.01
NUP54-213ENST00000513352 PABPC3Q9H361 631 aaKnown RBP15.14■□□□□ 0.01
NUP54-213ENST00000513352 USP29Q9HBJ7 922 aa15.14■□□□□ 0.01
NUP54-213ENST00000513352 SARDHQ9UL12 918 aa15.14■□□□□ 0.01
NUP54-213ENST00000513352 PPM1HQ9ULR3 514 aa15.14■□□□□ 0.01
NUP54-213ENST00000513352 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP15.13■□□□□ 0.01
NUP54-213ENST00000513352 A0A1W2PP55 124 aa15.13■□□□□ 0.01
NUP54-213ENST00000513352 PDE2AO00408 941 aaPredicted RBP15.13■□□□□ 0.01
NUP54-213ENST00000513352 PLK4O00444 970 aa15.13■□□□□ 0.01
NUP54-213ENST00000513352 OPHN1O60890 802 aa15.13■□□□□ 0.01
NUP54-213ENST00000513352 RNASEH2AO75792 299 aaKnown RBP15.13■□□□□ 0.01
NUP54-213ENST00000513352 SERPINF2P08697 491 aa15.13■□□□□ 0.01
NUP54-213ENST00000513352 C5AR1P21730 350 aa15.13■□□□□ 0.01
NUP54-213ENST00000513352 CA4P22748 312 aa15.13■□□□□ 0.01
NUP54-213ENST00000513352 XPAP23025 273 aaPredicted RBP15.13■□□□□ 0.01
NUP54-213ENST00000513352 CES1P23141 567 aa15.13■□□□□ 0.01
NUP54-213ENST00000513352 STIP1P31948 543 aaKnown RBP15.13■□□□□ 0.01
NUP54-213ENST00000513352 COILP38432 576 aaPredicted RBP15.13■□□□□ 0.01
NUP54-213ENST00000513352 LMNB2Q03252 620 aa15.13■□□□□ 0.01
NUP54-213ENST00000513352 DMWDQ09019 674 aa15.13■□□□□ 0.01
NUP54-213ENST00000513352 NIPAL4Q0D2K0 466 aa15.13■□□□□ 0.01
NUP54-213ENST00000513352 PCSK7Q16549 785 aa15.13■□□□□ 0.01
NUP54-213ENST00000513352 NCEH1Q6PIU2 408 aa15.13■□□□□ 0.01
NUP54-213ENST00000513352 CCDC137Q6PK04 289 aaKnown RBP15.13■□□□□ 0.01
NUP54-213ENST00000513352 RASSF3Q86WH2 238 aa15.13■□□□□ 0.01
NUP54-213ENST00000513352 CAMK1DQ8IU85 385 aa15.13■□□□□ 0.01
NUP54-213ENST00000513352 HDDC3Q8N4P3 179 aa15.13■□□□□ 0.01
NUP54-213ENST00000513352 CPEB1Q9BZB8 566 aaKnown RBP15.13■□□□□ 0.01
NUP54-213ENST00000513352 DDX47Q9H0S4 455 aaKnown RBP15.13■□□□□ 0.01
NUP54-213ENST00000513352 SLC25A51Q9H1U9 297 aa15.13■□□□□ 0.01
NUP54-213ENST00000513352 GBA3Q9H227 469 aa15.13■□□□□ 0.01
NUP54-213ENST00000513352 FBXL12Q9NXK8 326 aa15.13■□□□□ 0.01
NUP54-213ENST00000513352 UBP1Q9NZI7 540 aa15.13■□□□□ 0.01
NUP54-213ENST00000513352 CDC23Q9UJX2 597 aa15.13■□□□□ 0.01
NUP54-213ENST00000513352 CYP8B1Q9UNU6 501 aa15.13■□□□□ 0.01
NUP54-213ENST00000513352 INVSQ9Y283 1065 aa15.13■□□□□ 0.01
NUP54-213ENST00000513352 DRG1Q9Y295 367 aaKnown RBP15.13■□□□□ 0.01
NUP54-213ENST00000513352 NCKAP1Q9Y2A7 1128 aa15.13■□□□□ 0.01
NUP54-213ENST00000513352 PCDHGC4Q9Y5F7 938 aa15.13■□□□□ 0.01
NUP54-213ENST00000513352 C5orf60A6NFR6 353 aa15.12■□□□□ 0.01
NUP54-213ENST00000513352 GALR2O43603 387 aaPredicted RBP15.12■□□□□ 0.01
NUP54-213ENST00000513352 ETS1P14921 441 aa15.12■□□□□ 0.01
NUP54-213ENST00000513352 CR2P20023 1033 aa15.12■□□□□ 0.01
NUP54-213ENST00000513352 PSMB4P28070 264 aa15.12■□□□□ 0.01
NUP54-213ENST00000513352 CD68P34810 354 aaPredicted RBP15.12■□□□□ 0.01
NUP54-213ENST00000513352 TNNT3P45378 269 aaPredicted RBP15.12■□□□□ 0.01
NUP54-213ENST00000513352 FNTAP49354 379 aa15.12■□□□□ 0.01
NUP54-213ENST00000513352 ZBTB16Q05516 673 aa15.12■□□□□ 0.01
NUP54-213ENST00000513352 C2orf54Q08AI8 447 aa15.12■□□□□ 0.01
NUP54-213ENST00000513352 SFSWAPQ12872 951 aaKnown RBP15.12■□□□□ 0.01
NUP54-213ENST00000513352 PRPSAP1Q14558 356 aa15.12■□□□□ 0.01
NUP54-213ENST00000513352 CYP1B1Q16678 543 aa15.12■□□□□ 0.01
NUP54-213ENST00000513352 ZNF805Q5CZA5 627 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms