RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 MX2P20592 715 aa13.19□□□□□ -0.3
CLK3-224ENST00000568605 COMTP21964 271 aa13.19□□□□□ -0.3
CLK3-224ENST00000568605 KDELR1P24390 212 aa13.19□□□□□ -0.3
CLK3-224ENST00000568605 MAPK8P45983 427 aa13.19□□□□□ -0.3
CLK3-224ENST00000568605 RENBPP51606 427 aa13.19□□□□□ -0.3
CLK3-224ENST00000568605 ARSEP51690 589 aa13.19□□□□□ -0.3
CLK3-224ENST00000568605 KIF5AQ12840 1032 aa13.19□□□□□ -0.3
CLK3-224ENST00000568605 CNTN1Q12860 1018 aa13.19□□□□□ -0.3
CLK3-224ENST00000568605 PAFAH1B3Q15102 231 aaKnown RBP13.19□□□□□ -0.3
CLK3-224ENST00000568605 CCDC6Q16204 474 aa13.19□□□□□ -0.3
CLK3-224ENST00000568605 POM121L1PQ3SYA9 428 aa13.19□□□□□ -0.3
CLK3-224ENST00000568605 CFAP58Q5T655 872 aa13.19□□□□□ -0.3
CLK3-224ENST00000568605 AGBL4Q5VU57 503 aa13.19□□□□□ -0.3
CLK3-224ENST00000568605 KIAA0895LQ68EN5 471 aa13.19□□□□□ -0.3
CLK3-224ENST00000568605 TIGD7Q6NT04 549 aaPredicted RBP13.19□□□□□ -0.3
CLK3-224ENST00000568605 SLC23A3Q6PIS1 610 aa13.19□□□□□ -0.3
CLK3-224ENST00000568605 NCEH1Q6PIU2 408 aa13.19□□□□□ -0.3
CLK3-224ENST00000568605 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.19□□□□□ -0.3
CLK3-224ENST00000568605 ERN2Q76MJ5 926 aaKnown RBP13.19□□□□□ -0.3
CLK3-224ENST00000568605 DAAM2Q86T65 1068 aa13.19□□□□□ -0.3
CLK3-224ENST00000568605 CPNE8Q86YQ8 564 aa13.19□□□□□ -0.3
CLK3-224ENST00000568605 TMEM139Q8IV31 216 aa13.19□□□□□ -0.3
CLK3-224ENST00000568605 ZCCHC9Q8N567 271 aaKnown RBP13.19□□□□□ -0.3
CLK3-224ENST00000568605 ACRBPQ8NEB7 543 aa13.19□□□□□ -0.3
CLK3-224ENST00000568605 NETO1Q8TDF5 533 aa13.19□□□□□ -0.3
CLK3-224ENST00000568605 DNASE2BQ8WZ79 361 aa13.19□□□□□ -0.3
CLK3-224ENST00000568605 ANP32BQ92688 251 aaKnown RBP13.19□□□□□ -0.3
CLK3-224ENST00000568605 FAM131CQ96AQ9 280 aa13.19□□□□□ -0.3
CLK3-224ENST00000568605 FAF2Q96CS3 445 aa13.19□□□□□ -0.3
CLK3-224ENST00000568605 EDEM2Q9BV94 578 aa13.19□□□□□ -0.3
CLK3-224ENST00000568605 MAK16Q9BXY0 300 aaKnown RBP13.19□□□□□ -0.3
CLK3-224ENST00000568605 HDAC8Q9BY41 377 aa13.19□□□□□ -0.3
CLK3-224ENST00000568605 MIR1-1HGQ9H1L0 117 aa13.19□□□□□ -0.3
CLK3-224ENST00000568605 NEUROG2Q9H2A3 272 aa13.19□□□□□ -0.3
CLK3-224ENST00000568605 GRPEL1Q9HAV7 217 aa13.19□□□□□ -0.3
CLK3-224ENST00000568605 PREBQ9HCU5 417 aa13.19□□□□□ -0.3
CLK3-224ENST00000568605 SEPT3Q9UH03 358 aa13.19□□□□□ -0.3
CLK3-224ENST00000568605 CDV3Q9UKY7 258 aaKnown RBP13.19□□□□□ -0.3
CLK3-224ENST00000568605 SARDHQ9UL12 918 aa13.19□□□□□ -0.3
CLK3-224ENST00000568605 ACTL7AQ9Y615 435 aa13.19□□□□□ -0.3
CLK3-224ENST00000568605 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.19□□□□□ -0.3
CLK3-224ENST00000568605 TDRD6O60522 2096 aaKnown RBP13.19□□□□□ -0.3
CLK3-224ENST00000568605 SPTBN4Q9H254 2564 aa13.19□□□□□ -0.3
CLK3-224ENST00000568605 TBC1D3DA0A087WVF3 549 aa13.18□□□□□ -0.3
CLK3-224ENST00000568605 TBC1D3IA0A087WXS9 549 aa13.18□□□□□ -0.3
CLK3-224ENST00000568605 TBC1D3EA0A087X179 549 aa13.18□□□□□ -0.3
CLK3-224ENST00000568605 TBC1D3KA0A087X1G2 549 aa13.18□□□□□ -0.3
CLK3-224ENST00000568605 TBC1D3FA6NER0 549 aaPredicted RBP13.18□□□□□ -0.3
CLK3-224ENST00000568605 TBC1D3LB9A6J9 549 aa13.18□□□□□ -0.3
CLK3-224ENST00000568605 J3KR12 359 aa13.18□□□□□ -0.3
CLK3-224ENST00000568605 BCAT2O15382 392 aaPredicted RBP13.18□□□□□ -0.3
CLK3-224ENST00000568605 PJA2O43164 708 aa13.18□□□□□ -0.3
CLK3-224ENST00000568605 ARHGAP6O43182 974 aa13.18□□□□□ -0.3
CLK3-224ENST00000568605 NEBLO76041 1014 aa13.18□□□□□ -0.3
CLK3-224ENST00000568605 UGT2B4P06133 528 aa13.18□□□□□ -0.3
CLK3-224ENST00000568605 SYPP08247 313 aa13.18□□□□□ -0.3
CLK3-224ENST00000568605 SERPINF2P08697 491 aa13.18□□□□□ -0.3
CLK3-224ENST00000568605 TBC1D3HP0C7X1 549 aa13.18□□□□□ -0.3
CLK3-224ENST00000568605 ZFXP17010 805 aaPredicted RBP13.18□□□□□ -0.3
CLK3-224ENST00000568605 CCR5P51681 352 aa13.18□□□□□ -0.3
CLK3-224ENST00000568605 ATXN3P54252 364 aaPredicted RBP13.18□□□□□ -0.3
CLK3-224ENST00000568605 MMRN1Q13201 1228 aa13.18□□□□□ -0.3
CLK3-224ENST00000568605 SF3A2Q15428 464 aaKnown RBP13.18□□□□□ -0.3
CLK3-224ENST00000568605 TEAD4Q15561 434 aa13.18□□□□□ -0.3
CLK3-224ENST00000568605 ATP13A4Q4VNC1 1196 aa13.18□□□□□ -0.3
CLK3-224ENST00000568605 SETMARQ53H47 684 aaPredicted RBP13.18□□□□□ -0.3
CLK3-224ENST00000568605 ATXN7L2Q5T6C5 722 aaPredicted RBP13.18□□□□□ -0.3
CLK3-224ENST00000568605 NCBP2-AS2Q69YL0 99 aa13.18□□□□□ -0.3
CLK3-224ENST00000568605 TBC1D3GQ6DHY5 549 aa13.18□□□□□ -0.3
CLK3-224ENST00000568605 TBC1D3CQ6IPX1 549 aa13.18□□□□□ -0.3
CLK3-224ENST00000568605 FBXL19Q6PCT2 694 aa13.18□□□□□ -0.3
CLK3-224ENST00000568605 ZSCAN30Q86W11 494 aa13.18□□□□□ -0.3
CLK3-224ENST00000568605 TBC1D3Q8IZP1 549 aaPredicted RBP13.18□□□□□ -0.3
CLK3-224ENST00000568605 SYCE1Q8N0S2 351 aa13.18□□□□□ -0.3
CLK3-224ENST00000568605 PAF1Q8N7H5 531 aa13.18□□□□□ -0.3
CLK3-224ENST00000568605 OR6K2Q8NGY2 324 aa13.18□□□□□ -0.3
CLK3-224ENST00000568605 RAB7BQ96AH8 199 aa13.18□□□□□ -0.3
CLK3-224ENST00000568605 BIRC7Q96CA5 298 aa13.18□□□□□ -0.3
CLK3-224ENST00000568605 EXOC2Q96KP1 924 aa13.18□□□□□ -0.3
CLK3-224ENST00000568605 TSGA10Q9BZW7 698 aa13.18□□□□□ -0.3
CLK3-224ENST00000568605 ETNK2Q9NVF9 386 aa13.18□□□□□ -0.3
CLK3-224ENST00000568605 LHX3Q9UBR4 397 aa13.18□□□□□ -0.3
CLK3-224ENST00000568605 EIF2B4Q9UI10 523 aaKnown RBP13.18□□□□□ -0.3
CLK3-224ENST00000568605 SLC6A14Q9UN76 642 aa13.18□□□□□ -0.3
CLK3-224ENST00000568605 MFHAS1Q9Y4C4 1052 aa13.18□□□□□ -0.3
CLK3-224ENST00000568605 ASCC3Q8N3C0 2202 aaKnown RBP13.18□□□□□ -0.3
CLK3-224ENST00000568605 LNP1A1A4G5 178 aa13.17□□□□□ -0.3
CLK3-224ENST00000568605 APOL1O14791 398 aa13.17□□□□□ -0.3
CLK3-224ENST00000568605 ADRB3P13945 408 aa13.17□□□□□ -0.3
CLK3-224ENST00000568605 TGM1P22735 817 aa13.17□□□□□ -0.3
CLK3-224ENST00000568605 IL4RP24394 825 aa13.17□□□□□ -0.3
CLK3-224ENST00000568605 CD27P26842 260 aa13.17□□□□□ -0.3
CLK3-224ENST00000568605 SERPINA4P29622 427 aa13.17□□□□□ -0.3
CLK3-224ENST00000568605 GARSP41250 739 aaKnown RBP13.17□□□□□ -0.3
CLK3-224ENST00000568605 CSNK1DP48730 415 aa13.17□□□□□ -0.3
CLK3-224ENST00000568605 AFF3P51826 1226 aaKnown RBP13.17□□□□□ -0.3
CLK3-224ENST00000568605 AP1S1P61966 158 aa13.17□□□□□ -0.3
CLK3-224ENST00000568605 GALNT2Q10471 571 aa13.17□□□□□ -0.3
CLK3-224ENST00000568605 TFDP2Q14188 446 aa13.17□□□□□ -0.3
CLK3-224ENST00000568605 LBRQ14739 615 aaKnown RBP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms