RNA–Protein interactions for RNA: ENST00000577539.1

VAPA-203, Transcript of VAMP associated protein A, humanhuman

Gene VAPA, Length 3,760 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-203ENST00000577539 VAV1P15498 845 aa5.47□□□□□ -1.53
VAPA-203ENST00000577539 POU3F2P20265 443 aaPredicted RBP5.47□□□□□ -1.53
VAPA-203ENST00000577539 HTR3AP46098 478 aa5.47□□□□□ -1.53
VAPA-203ENST00000577539 MRPS5P82675 430 aaKnown RBP5.47□□□□□ -1.53
VAPA-203ENST00000577539 ARHGAP8P85298 464 aa5.47□□□□□ -1.53
VAPA-203ENST00000577539 DPYSL2Q16555 572 aa5.47□□□□□ -1.53
VAPA-203ENST00000577539 CCL15Q16663 113 aa5.47□□□□□ -1.53
VAPA-203ENST00000577539 C1orf146Q5VVC0 180 aa5.47□□□□□ -1.53
VAPA-203ENST00000577539 SLC26A9Q7LBE3 791 aa5.47□□□□□ -1.53
VAPA-203ENST00000577539 TP53INP2Q8IXH6 220 aa5.47□□□□□ -1.53
VAPA-203ENST00000577539 HACE1Q8IYU2 909 aa5.47□□□□□ -1.53
VAPA-203ENST00000577539 MCUQ8NE86 351 aa5.47□□□□□ -1.53
VAPA-203ENST00000577539 RNF139Q8WU17 664 aa5.47□□□□□ -1.53
VAPA-203ENST00000577539 WDR60Q8WVS4 1066 aa5.47□□□□□ -1.53
VAPA-203ENST00000577539 LENG1Q96BZ8 264 aaPredicted RBP5.47□□□□□ -1.53
VAPA-203ENST00000577539 CCDC124Q96CT7 223 aaKnown RBP5.47□□□□□ -1.53
VAPA-203ENST00000577539 MTBPQ96DY7 904 aa5.47□□□□□ -1.53
VAPA-203ENST00000577539 P2RY11Q96G91 374 aa5.47□□□□□ -1.53
VAPA-203ENST00000577539 FAXDC2Q96IV6 333 aa5.47□□□□□ -1.53
VAPA-203ENST00000577539 TNIP3Q96KP6 325 aa5.47□□□□□ -1.53
VAPA-203ENST00000577539 SNX27Q96L92 541 aa5.47□□□□□ -1.53
VAPA-203ENST00000577539 PPP1R36Q96LQ0 422 aa5.47□□□□□ -1.53
VAPA-203ENST00000577539 ZNF560Q96MR9 790 aa5.47□□□□□ -1.53
VAPA-203ENST00000577539 BATF3Q9NR55 127 aa5.47□□□□□ -1.53
VAPA-203ENST00000577539 KCNK4Q9NYG8 393 aa5.47□□□□□ -1.53
VAPA-203ENST00000577539 STAP1Q9ULZ2 295 aa5.47□□□□□ -1.53
VAPA-203ENST00000577539 APOBEC2Q9Y235 224 aaKnown RBP5.47□□□□□ -1.53
VAPA-203ENST00000577539 PCDHA11Q9Y5I1 949 aa5.47□□□□□ -1.53
VAPA-203ENST00000577539 RLFQ13129 1914 aa5.47□□□□□ -1.53
VAPA-203ENST00000577539 SMIM28A0A1B0GU29 152 aa5.46□□□□□ -1.53
VAPA-203ENST00000577539 GOLGA8TH3BQL2 631 aa5.46□□□□□ -1.53
VAPA-203ENST00000577539 SUSD5O60279 629 aa5.46□□□□□ -1.53
VAPA-203ENST00000577539 GCATO75600 419 aa5.46□□□□□ -1.53
VAPA-203ENST00000577539 TGDSO95455 350 aa5.46□□□□□ -1.53
VAPA-203ENST00000577539 PRKCHP24723 683 aa5.46□□□□□ -1.53
VAPA-203ENST00000577539 ACADSBP45954 432 aa5.46□□□□□ -1.53
VAPA-203ENST00000577539 NR2C2P49116 596 aa5.46□□□□□ -1.53
VAPA-203ENST00000577539 MAP3K7CLP57077 242 aa5.46□□□□□ -1.53
VAPA-203ENST00000577539 C21orf62-AS1Q17RA5 79 aa5.46□□□□□ -1.53
VAPA-203ENST00000577539 NCBP2-AS2Q69YL0 99 aa5.46□□□□□ -1.53
VAPA-203ENST00000577539 CMC1Q7Z7K0 106 aa5.46□□□□□ -1.53
VAPA-203ENST00000577539 ZNF410Q86VK4 478 aa5.46□□□□□ -1.53
VAPA-203ENST00000577539 UNC93AQ86WB7 457 aa5.46□□□□□ -1.53
VAPA-203ENST00000577539 ZDHHC17Q8IUH5 632 aa5.46□□□□□ -1.53
VAPA-203ENST00000577539 MYO1HQ8N1T3 1032 aa5.46□□□□□ -1.53
VAPA-203ENST00000577539 RBM15BQ8NDT2 890 aaKnown RBP5.46□□□□□ -1.53
VAPA-203ENST00000577539 OR52K1Q8NGK4 314 aa5.46□□□□□ -1.53
VAPA-203ENST00000577539 USP33Q8TEY7 942 aa5.46□□□□□ -1.53
VAPA-203ENST00000577539 TTC9Q92623 222 aa5.46□□□□□ -1.53
VAPA-203ENST00000577539 SKA1Q96BD8 255 aa5.46□□□□□ -1.53
VAPA-203ENST00000577539 C1orf159Q96HA4 380 aa5.46□□□□□ -1.53
VAPA-203ENST00000577539 QKIQ96PU8 341 aaKnown RBP eCLIP5.46□□□□□ -1.53
VAPA-203ENST00000577539 YIPF3Q9GZM5 350 aa5.46□□□□□ -1.53
VAPA-203ENST00000577539 XPNPEP3Q9NQH7 507 aa5.46□□□□□ -1.53
VAPA-203ENST00000577539 SYBUQ9NX95 663 aa5.46□□□□□ -1.53
VAPA-203ENST00000577539 ZNF180Q9UJW8 692 aa5.46□□□□□ -1.53
VAPA-203ENST00000577539 SLC6A14Q9UN76 642 aa5.46□□□□□ -1.53
VAPA-203ENST00000577539 ARNTLO00327 626 aa5.46□□□□□ -1.54
VAPA-203ENST00000577539 CD4P01730 458 aa5.46□□□□□ -1.54
VAPA-203ENST00000577539 MMP3P08254 477 aa5.46□□□□□ -1.54
VAPA-203ENST00000577539 MYL3P08590 195 aa5.46□□□□□ -1.54
VAPA-203ENST00000577539 TPH1P17752 444 aa5.46□□□□□ -1.54
VAPA-203ENST00000577539 PMLP29590 882 aa5.46□□□□□ -1.54
VAPA-203ENST00000577539 HOXA11P31270 313 aaPredicted RBP5.46□□□□□ -1.54
VAPA-203ENST00000577539 FDFT1P37268 417 aa5.46□□□□□ -1.54
VAPA-203ENST00000577539 VHLP40337 213 aa5.46□□□□□ -1.54
VAPA-203ENST00000577539 GARSP41250 739 aaKnown RBP5.46□□□□□ -1.54
VAPA-203ENST00000577539 MATKP42679 507 aa5.46□□□□□ -1.54
VAPA-203ENST00000577539 PTPN9P43378 593 aa5.46□□□□□ -1.54
VAPA-203ENST00000577539 ITGA9Q13797 1035 aa5.46□□□□□ -1.54
VAPA-203ENST00000577539 GALEQ14376 348 aa5.46□□□□□ -1.54
VAPA-203ENST00000577539 PDK1Q15118 436 aa5.46□□□□□ -1.54
VAPA-203ENST00000577539 WSCD1Q658N2 575 aa5.46□□□□□ -1.54
VAPA-203ENST00000577539 NXNQ6DKJ4 435 aa5.46□□□□□ -1.54
VAPA-203ENST00000577539 C4orf22Q6V702 233 aa5.46□□□□□ -1.54
VAPA-203ENST00000577539 PACS1Q6VY07 963 aa5.46□□□□□ -1.54
VAPA-203ENST00000577539 RAPH1Q70E73 1250 aa5.46□□□□□ -1.54
VAPA-203ENST00000577539 CTU1Q7Z7A3 348 aaKnown RBP5.46□□□□□ -1.54
VAPA-203ENST00000577539 LRRC52Q8N7C0 313 aa5.46□□□□□ -1.54
VAPA-203ENST00000577539 GSTCDQ8NEC7 633 aa5.46□□□□□ -1.54
VAPA-203ENST00000577539 TSPAN18Q96SJ8 248 aa5.46□□□□□ -1.54
VAPA-203ENST00000577539 PLEKHA5Q9HAU0 1116 aa5.46□□□□□ -1.54
VAPA-203ENST00000577539 PNPLA8Q9NP80 782 aa5.46□□□□□ -1.54
VAPA-203ENST00000577539 ACSS2Q9NR19 701 aa5.46□□□□□ -1.54
VAPA-203ENST00000577539 BFARQ9NZS9 450 aa5.46□□□□□ -1.54
VAPA-203ENST00000577539 CPSF2Q9P2I0 782 aaKnown RBP5.46□□□□□ -1.54
VAPA-203ENST00000577539 LNPEPQ9UIQ6 1025 aa5.46□□□□□ -1.54
VAPA-203ENST00000577539 HBS1LQ9Y450 684 aaKnown RBP5.46□□□□□ -1.54
VAPA-203ENST00000577539 PSAT1Q9Y617 370 aa5.46□□□□□ -1.54
VAPA-203ENST00000577539 RRN3P2A6NIE6 340 aa5.46□□□□□ -1.54
VAPA-203ENST00000577539 FAM159BA6NKW6 160 aa5.46□□□□□ -1.54
VAPA-203ENST00000577539 C9IYK1 514 aa5.46□□□□□ -1.54
VAPA-203ENST00000577539 TRAFD1O14545 582 aaPredicted RBP5.46□□□□□ -1.54
VAPA-203ENST00000577539 ITM2AO43736 263 aa5.46□□□□□ -1.54
VAPA-203ENST00000577539 GLRA3O75311 464 aa5.46□□□□□ -1.54
VAPA-203ENST00000577539 PSMG1O95456 288 aa5.46□□□□□ -1.54
VAPA-203ENST00000577539 HSPA4LO95757 839 aa5.46□□□□□ -1.54
VAPA-203ENST00000577539 SNAI1O95863 264 aaPredicted RBP5.46□□□□□ -1.54
VAPA-203ENST00000577539 POLBP06746 335 aa5.46□□□□□ -1.54
VAPA-203ENST00000577539 NCAM1P13591 858 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms