RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 CCDC114Q96M63 670 aa13.6□□□□□ -0.23
VPS28-210ENST00000529182 HSPA12BQ96MM6 686 aa13.6□□□□□ -0.23
VPS28-210ENST00000529182 OMDQ99983 421 aa13.6□□□□□ -0.23
VPS28-210ENST00000529182 BTBD1Q9H0C5 482 aa13.6□□□□□ -0.23
VPS28-210ENST00000529182 C6orf106Q9H6K1 298 aaPredicted RBP13.6□□□□□ -0.23
VPS28-210ENST00000529182 ZDHHC6Q9H6R6 413 aa13.6□□□□□ -0.23
VPS28-210ENST00000529182 IL36AQ9UHA7 158 aa13.6□□□□□ -0.23
VPS28-210ENST00000529182 IPO11Q9UI26 975 aaKnown RBP13.6□□□□□ -0.23
VPS28-210ENST00000529182 SCML1Q9UN30 329 aa13.6□□□□□ -0.23
VPS28-210ENST00000529182 NCKAP1Q9Y2A7 1128 aa13.6□□□□□ -0.23
VPS28-210ENST00000529182 FARP1Q9Y4F1 1045 aaPredicted RBP13.6□□□□□ -0.23
VPS28-210ENST00000529182 WASF2Q9Y6W5 498 aa13.6□□□□□ -0.23
VPS28-210ENST00000529182 CXorf51AA0A1B0GTR3 108 aa13.59□□□□□ -0.23
VPS28-210ENST00000529182 BCLAF3A2AJT9 711 aaKnown RBP13.59□□□□□ -0.23
VPS28-210ENST00000529182 FAM47DPA6NHR8 397 aa13.59□□□□□ -0.23
VPS28-210ENST00000529182 BTNL10A8MVZ5 291 aa13.59□□□□□ -0.23
VPS28-210ENST00000529182 C1QTNF3-AMACRE9PGA6 284 aa13.59□□□□□ -0.23
VPS28-210ENST00000529182 KPNA3O00505 521 aaPredicted RBP13.59□□□□□ -0.23
VPS28-210ENST00000529182 LEFTY1O75610 366 aa13.59□□□□□ -0.23
VPS28-210ENST00000529182 GSRP00390 522 aa13.59□□□□□ -0.23
VPS28-210ENST00000529182 TGM1P22735 817 aa13.59□□□□□ -0.23
VPS28-210ENST00000529182 MPLP40238 635 aa13.59□□□□□ -0.23
VPS28-210ENST00000529182 RHOAP61586 193 aa13.59□□□□□ -0.23
VPS28-210ENST00000529182 ZNF33AQ06730 810 aa13.59□□□□□ -0.23
VPS28-210ENST00000529182 CNTN1Q12860 1018 aa13.59□□□□□ -0.23
VPS28-210ENST00000529182 INO80DQ53TQ3 878 aaPredicted RBP13.59□□□□□ -0.23
VPS28-210ENST00000529182 LRRC38Q5VT99 294 aa13.59□□□□□ -0.23
VPS28-210ENST00000529182 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.59□□□□□ -0.23
VPS28-210ENST00000529182 USP30Q70CQ3 517 aa13.59□□□□□ -0.23
VPS28-210ENST00000529182 CYP2U1Q7Z449 544 aa13.59□□□□□ -0.23
VPS28-210ENST00000529182 LRRC8AQ8IWT6 810 aa13.59□□□□□ -0.23
VPS28-210ENST00000529182 OR2AP1Q8NGE2 309 aa13.59□□□□□ -0.23
VPS28-210ENST00000529182 LRRN4Q8WUT4 740 aa13.59□□□□□ -0.23
VPS28-210ENST00000529182 PIGKQ92643 395 aa13.59□□□□□ -0.23
VPS28-210ENST00000529182 VOPP1Q96AW1 172 aa13.59□□□□□ -0.23
VPS28-210ENST00000529182 ARRDC3Q96B67 414 aa13.59□□□□□ -0.23
VPS28-210ENST00000529182 RNF25Q96BH1 459 aaPredicted RBP13.59□□□□□ -0.23
VPS28-210ENST00000529182 ZNF419Q96HQ0 510 aaPredicted RBP13.59□□□□□ -0.23
VPS28-210ENST00000529182 RNF157Q96PX1 679 aa13.59□□□□□ -0.23
VPS28-210ENST00000529182 HEPHQ9BQS7 1158 aa13.59□□□□□ -0.23
VPS28-210ENST00000529182 SP110Q9HB58 689 aa13.59□□□□□ -0.23
VPS28-210ENST00000529182 TMEM74BQ9NUR3 256 aa13.59□□□□□ -0.23
VPS28-210ENST00000529182 LHX3Q9UBR4 397 aa13.59□□□□□ -0.23
VPS28-210ENST00000529182 MACROD2A1Z1Q3 448 aa13.58□□□□□ -0.24
VPS28-210ENST00000529182 KRIT1O00522 736 aa13.58□□□□□ -0.24
VPS28-210ENST00000529182 INSIG1O15503 277 aa13.58□□□□□ -0.24
VPS28-210ENST00000529182 PSTPIP1O43586 416 aa13.58□□□□□ -0.24
VPS28-210ENST00000529182 PALMO75781 387 aa13.58□□□□□ -0.24
VPS28-210ENST00000529182 SEMA4FO95754 770 aa13.58□□□□□ -0.24
VPS28-210ENST00000529182 MAOBP27338 520 aa13.58□□□□□ -0.24
VPS28-210ENST00000529182 SERPINB6P35237 376 aa13.58□□□□□ -0.24
VPS28-210ENST00000529182 RGRP47804 291 aa13.58□□□□□ -0.24
VPS28-210ENST00000529182 SNRPD1P62314 119 aaKnown RBP13.58□□□□□ -0.24
VPS28-210ENST00000529182 GBE1Q04446 702 aa13.58□□□□□ -0.24
VPS28-210ENST00000529182 IL10RBQ08334 325 aa13.58□□□□□ -0.24
VPS28-210ENST00000529182 PAFAH1B3Q15102 231 aaKnown RBP13.58□□□□□ -0.24
VPS28-210ENST00000529182 LLGL1Q15334 1064 aa13.58□□□□□ -0.24
VPS28-210ENST00000529182 AGBL4Q5VU57 503 aa13.58□□□□□ -0.24
VPS28-210ENST00000529182 FAM46CQ5VWP2 391 aa13.58□□□□□ -0.24
VPS28-210ENST00000529182 TCEAL6Q6IPX3 200 aa13.58□□□□□ -0.24
VPS28-210ENST00000529182 MFSD7Q6UXD7 560 aa13.58□□□□□ -0.24
VPS28-210ENST00000529182 KIAA2013Q8IYS2 634 aa13.58□□□□□ -0.24
VPS28-210ENST00000529182 ATPAF2Q8N5M1 289 aa13.58□□□□□ -0.24
VPS28-210ENST00000529182 TMIEQ8NEW7 156 aa13.58□□□□□ -0.24
VPS28-210ENST00000529182 OR14C36Q8NHC7 312 aa13.58□□□□□ -0.24
VPS28-210ENST00000529182 CASKIN2Q8WXE0 1202 aa13.58□□□□□ -0.24
VPS28-210ENST00000529182 KRT35Q92764 455 aa13.58□□□□□ -0.24
VPS28-210ENST00000529182 TCEAL3Q969E4 200 aa13.58□□□□□ -0.24
VPS28-210ENST00000529182 SGK2Q9HBY8 427 aa13.58□□□□□ -0.24
VPS28-210ENST00000529182 EVLQ9UI08 416 aaPredicted RBP13.58□□□□□ -0.24
VPS28-210ENST00000529182 FZD4Q9ULV1 537 aa13.58□□□□□ -0.24
VPS28-210ENST00000529182 ADGRG1Q9Y653 693 aa13.58□□□□□ -0.24
VPS28-210ENST00000529182 DMXL1Q9Y485 3027 aa13.58□□□□□ -0.24
VPS28-210ENST00000529182 GRID2IPA4D2P6 1211 aa13.57□□□□□ -0.24
VPS28-210ENST00000529182 MEI4A8MW99 385 aa13.57□□□□□ -0.24
VPS28-210ENST00000529182 PATE3B3GLJ2 98 aa13.57□□□□□ -0.24
VPS28-210ENST00000529182 ARHGAP6O43182 974 aa13.57□□□□□ -0.24
VPS28-210ENST00000529182 MAFKO60675 156 aa13.57□□□□□ -0.24
VPS28-210ENST00000529182 GJB3O75712 270 aa13.57□□□□□ -0.24
VPS28-210ENST00000529182 FSBPO95073 299 aa13.57□□□□□ -0.24
VPS28-210ENST00000529182 PEX11BO96011 259 aa13.57□□□□□ -0.24
VPS28-210ENST00000529182 PRNPP04156 253 aa13.57□□□□□ -0.24
VPS28-210ENST00000529182 ADPRHP54922 357 aa13.57□□□□□ -0.24
VPS28-210ENST00000529182 CCZ1BP86790 482 aa13.57□□□□□ -0.24
VPS28-210ENST00000529182 CCZ1P86791 482 aaPredicted RBP13.57□□□□□ -0.24
VPS28-210ENST00000529182 SLC10A7Q0GE19 358 aa13.57□□□□□ -0.24
VPS28-210ENST00000529182 KIF5AQ12840 1032 aa13.57□□□□□ -0.24
VPS28-210ENST00000529182 SFSWAPQ12872 951 aaKnown RBP13.57□□□□□ -0.24
VPS28-210ENST00000529182 SLC10A2Q12908 348 aaPredicted RBP13.57□□□□□ -0.24
VPS28-210ENST00000529182 SF3A2Q15428 464 aaKnown RBP13.57□□□□□ -0.24
VPS28-210ENST00000529182 MYLK3Q32MK0 819 aa13.57□□□□□ -0.24
VPS28-210ENST00000529182 ODF2Q5BJF6 829 aa13.57□□□□□ -0.24
VPS28-210ENST00000529182 SPDYCQ5MJ68 293 aa13.57□□□□□ -0.24
VPS28-210ENST00000529182 PLA2G2CQ5R387 149 aa13.57□□□□□ -0.24
VPS28-210ENST00000529182 DCAF12L1Q5VU92 463 aa13.57□□□□□ -0.24
VPS28-210ENST00000529182 NCEH1Q6PIU2 408 aa13.57□□□□□ -0.24
VPS28-210ENST00000529182 PLPP6Q8IY26 295 aa13.57□□□□□ -0.24
VPS28-210ENST00000529182 RGL4Q8IZJ4 473 aa13.57□□□□□ -0.24
VPS28-210ENST00000529182 PLD5Q8N7P1 536 aa13.57□□□□□ -0.24
VPS28-210ENST00000529182 CCDC112Q8NEF3 446 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms