RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 UGT1A8Q9HAW9 530 aa23.02■■□□□ 1.28
CDX1-201ENST00000231656 CASS4Q9NQ75 786 aa23.02■■□□□ 1.28
CDX1-201ENST00000231656 GRID1Q9ULK0 1009 aa23.02■■□□□ 1.28
CDX1-201ENST00000231656 COLQQ9Y215 455 aaPredicted RBP23.02■■□□□ 1.28
CDX1-201ENST00000231656 DRGXA6NNA5 263 aa23.01■■□□□ 1.27
CDX1-201ENST00000231656 SOBPA7XYQ1 873 aa23.01■■□□□ 1.27
CDX1-201ENST00000231656 CACNG3O60359 315 aa23.01■■□□□ 1.27
CDX1-201ENST00000231656 SLC18A2Q05940 514 aa23.01■■□□□ 1.27
CDX1-201ENST00000231656 RARS2Q5T160 578 aaKnown RBP23.01■■□□□ 1.27
CDX1-201ENST00000231656 CASC4Q6P4E1 433 aa23.01■■□□□ 1.27
CDX1-201ENST00000231656 RFWD3Q6PCD5 774 aa23.01■■□□□ 1.27
CDX1-201ENST00000231656 OR52K1Q8NGK4 314 aa23.01■■□□□ 1.27
CDX1-201ENST00000231656 MYEOVQ96EZ4 313 aa23.01■■□□□ 1.27
CDX1-201ENST00000231656 RPRD1AQ96P16 312 aaPredicted RBP23.01■■□□□ 1.27
CDX1-201ENST00000231656 KLF6Q99612 283 aaPredicted RBP23.01■■□□□ 1.27
CDX1-201ENST00000231656 ZYG11BQ9C0D3 744 aa23.01■■□□□ 1.27
CDX1-201ENST00000231656 TTYH1Q9H313 450 aaPredicted RBP23.01■■□□□ 1.27
CDX1-201ENST00000231656 FGFR1OP2Q9NVK5 253 aa23.01■■□□□ 1.27
CDX1-201ENST00000231656 LMCD1Q9NZU5 365 aa23.01■■□□□ 1.27
CDX1-201ENST00000231656 MRPS23Q9Y3D9 190 aaKnown RBP23.01■■□□□ 1.27
CDX1-201ENST00000231656 XIRP2A4UGR9 3374 aa23.01■■□□□ 1.27
CDX1-201ENST00000231656 ARHGAP42A6NI28 874 aa23.01■■□□□ 1.27
CDX1-201ENST00000231656 F5H5T6 163 aa23.01■■□□□ 1.27
CDX1-201ENST00000231656 GOLGA8RI6L899 631 aa23.01■■□□□ 1.27
CDX1-201ENST00000231656 MAFKO60675 156 aa23.01■■□□□ 1.27
CDX1-201ENST00000231656 AVPR1AP37288 418 aa23.01■■□□□ 1.27
CDX1-201ENST00000231656 ADGRF1Q5T601 910 aa23.01■■□□□ 1.27
CDX1-201ENST00000231656 LGI2Q8N0V4 545 aa23.01■■□□□ 1.27
CDX1-201ENST00000231656 CCDC197Q8NCU1 140 aa23.01■■□□□ 1.27
CDX1-201ENST00000231656 PAIP2Q9BPZ3 127 aaKnown RBP23.01■■□□□ 1.27
CDX1-201ENST00000231656 ELAC2Q9BQ52 826 aaKnown RBP23.01■■□□□ 1.27
CDX1-201ENST00000231656 SMG9Q9H0W8 520 aaKnown RBP23.01■■□□□ 1.27
CDX1-201ENST00000231656 STOML2Q9UJZ1 356 aa23.01■■□□□ 1.27
CDX1-201ENST00000231656 ARHGAP26Q9UNA1 814 aa23.01■■□□□ 1.27
CDX1-201ENST00000231656 TRIM49D1C9J1S8 452 aa23■■□□□ 1.27
CDX1-201ENST00000231656 CNTN5O94779 1100 aa23■■□□□ 1.27
CDX1-201ENST00000231656 LATS1O95835 1130 aa23■■□□□ 1.27
CDX1-201ENST00000231656 SNRPAP09012 282 aaKnown RBP23■■□□□ 1.27
CDX1-201ENST00000231656 RHOQP17081 205 aa23■■□□□ 1.27
CDX1-201ENST00000231656 CEBPBP17676 345 aa23■■□□□ 1.27
CDX1-201ENST00000231656 CRYMQ14894 314 aa23■■□□□ 1.27
CDX1-201ENST00000231656 C5orf22Q49AR2 442 aa23■■□□□ 1.27
CDX1-201ENST00000231656 Q6ZNB5 142 aa23■■□□□ 1.27
CDX1-201ENST00000231656 RGS9BPQ6ZS82 235 aa23■■□□□ 1.27
CDX1-201ENST00000231656 YTHDF3Q7Z739 585 aaKnown RBP23■■□□□ 1.27
CDX1-201ENST00000231656 TTC16Q8NEE8 873 aa23■■□□□ 1.27
CDX1-201ENST00000231656 ING5Q8WYH8 240 aa23■■□□□ 1.27
CDX1-201ENST00000231656 TTC17Q96AE7 1141 aa23■■□□□ 1.27
CDX1-201ENST00000231656 IL12RB2Q99665 862 aa23■■□□□ 1.27
CDX1-201ENST00000231656 CFAP97Q9P2B7 532 aa23■■□□□ 1.27
CDX1-201ENST00000231656 SCAMP3O14828 347 aaKnown RBP22.99■■□□□ 1.27
CDX1-201ENST00000231656 TM9SF1O15321 606 aa22.99■■□□□ 1.27
CDX1-201ENST00000231656 USP12O75317 370 aa22.99■■□□□ 1.27
CDX1-201ENST00000231656 KRT37O76014 449 aa22.99■■□□□ 1.27
CDX1-201ENST00000231656 CCNB1P14635 433 aa22.99■■□□□ 1.27
CDX1-201ENST00000231656 NEK3P51956 506 aa22.99■■□□□ 1.27
CDX1-201ENST00000231656 NIPAL4Q0D2K0 466 aa22.99■■□□□ 1.27
CDX1-201ENST00000231656 IFT88Q13099 833 aa22.99■■□□□ 1.27
CDX1-201ENST00000231656 ALFQ53S48 1182 aa22.99■■□□□ 1.27
CDX1-201ENST00000231656 LVRNQ6Q4G3 990 aa22.99■■□□□ 1.27
CDX1-201ENST00000231656 POTEHQ6S545 545 aa22.99■■□□□ 1.27
CDX1-201ENST00000231656 MARK2Q7KZI7 788 aaKnown RBP22.99■■□□□ 1.27
CDX1-201ENST00000231656 UNC5BQ8IZJ1 945 aa22.99■■□□□ 1.27
CDX1-201ENST00000231656 ITFG1Q8TB96 612 aa22.99■■□□□ 1.27
CDX1-201ENST00000231656 ZNF419Q96HQ0 510 aaPredicted RBP22.99■■□□□ 1.27
CDX1-201ENST00000231656 CABS1Q96KC9 395 aa22.99■■□□□ 1.27
CDX1-201ENST00000231656 APOL5Q9BWW9 433 aa22.99■■□□□ 1.27
CDX1-201ENST00000231656 NOL6Q9H6R4 1146 aaKnown RBP22.99■■□□□ 1.27
CDX1-201ENST00000231656 TMEM248Q9NWD8 314 aa22.99■■□□□ 1.27
CDX1-201ENST00000231656 SAMD15Q9P1V8 674 aa22.99■■□□□ 1.27
CDX1-201ENST00000231656 ZMYM5Q9UJ78 669 aa22.99■■□□□ 1.27
CDX1-201ENST00000231656 LSM7Q9UK45 103 aaKnown RBP22.99■■□□□ 1.27
CDX1-201ENST00000231656 CCL26Q9Y258 94 aa22.99■■□□□ 1.27
CDX1-201ENST00000231656 ANKRD65E5RJM6 399 aa22.99■■□□□ 1.27
CDX1-201ENST00000231656 LEFTY2O00292 366 aa22.99■■□□□ 1.27
CDX1-201ENST00000231656 MATN3O15232 486 aa22.99■■□□□ 1.27
CDX1-201ENST00000231656 SNX3O60493 162 aa22.99■■□□□ 1.27
CDX1-201ENST00000231656 CORO7P57737 925 aa22.99■■□□□ 1.27
CDX1-201ENST00000231656 ITIH4Q14624 930 aa22.99■■□□□ 1.27
CDX1-201ENST00000231656 GRIN2CQ14957 1233 aa22.99■■□□□ 1.27
CDX1-201ENST00000231656 PDK4Q16654 411 aa22.99■■□□□ 1.27
CDX1-201ENST00000231656 LGSNQ5TDP6 509 aa22.99■■□□□ 1.27
CDX1-201ENST00000231656 ANKRD54Q6NXT1 300 aa22.99■■□□□ 1.27
CDX1-201ENST00000231656 HTR3DQ70Z44 454 aa22.99■■□□□ 1.27
CDX1-201ENST00000231656 TFAP2DQ7Z6R9 452 aa22.99■■□□□ 1.27
CDX1-201ENST00000231656 TCP10LQ8TDR4 215 aa22.99■■□□□ 1.27
CDX1-201ENST00000231656 USP33Q8TEY7 942 aa22.99■■□□□ 1.27
CDX1-201ENST00000231656 APOPT1Q96IL0 206 aa22.99■■□□□ 1.27
CDX1-201ENST00000231656 ZSWIM3Q96MP5 696 aa22.99■■□□□ 1.27
CDX1-201ENST00000231656 TMEM265A0A087WTH1 108 aa22.98■■□□□ 1.27
CDX1-201ENST00000231656 PYGBP11216 843 aa22.98■■□□□ 1.27
CDX1-201ENST00000231656 ADAM15Q13444 863 aa22.98■■□□□ 1.27
CDX1-201ENST00000231656 PRPSAP1Q14558 356 aa22.98■■□□□ 1.27
CDX1-201ENST00000231656 CBX2Q14781 532 aaPredicted RBP22.98■■□□□ 1.27
CDX1-201ENST00000231656 HHATQ5VTY9 493 aa22.98■■□□□ 1.27
CDX1-201ENST00000231656 SYCE2Q6PIF2 218 aa22.98■■□□□ 1.27
CDX1-201ENST00000231656 OTOP3Q7RTS5 596 aa22.98■■□□□ 1.27
CDX1-201ENST00000231656 GPR149Q86SP6 731 aa22.98■■□□□ 1.27
CDX1-201ENST00000231656 CIR1Q86X95 450 aaPredicted RBP22.98■■□□□ 1.27
CDX1-201ENST00000231656 PRICKLE1Q96MT3 831 aaPredicted RBP22.98■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms