RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 SOBPA7XYQ1 873 aa18.42■□□□□ 0.54
VIM-201ENST00000224237 H0Y626 953 aa18.42■□□□□ 0.54
VIM-201ENST00000224237 ATP9BO43861 1147 aa18.42■□□□□ 0.54
VIM-201ENST00000224237 PMPCBO75439 489 aa18.42■□□□□ 0.54
VIM-201ENST00000224237 USP1O94782 785 aa18.42■□□□□ 0.54
VIM-201ENST00000224237 RHOP08100 348 aa18.42■□□□□ 0.54
VIM-201ENST00000224237 CHN1P15882 459 aa18.42■□□□□ 0.54
VIM-201ENST00000224237 RFTN1Q14699 578 aaPredicted RBP18.42■□□□□ 0.54
VIM-201ENST00000224237 GPR158Q5T848 1215 aa18.42■□□□□ 0.54
VIM-201ENST00000224237 ZNF449Q6P9G9 518 aa18.42■□□□□ 0.54
VIM-201ENST00000224237 ELMSAN1Q6PJG2 1045 aa18.42■□□□□ 0.54
VIM-201ENST00000224237 LEKR1Q6ZMV7 388 aa18.42■□□□□ 0.54
VIM-201ENST00000224237 TMEM135Q86UB9 458 aa18.42■□□□□ 0.54
VIM-201ENST00000224237 SPON2Q9BUD6 331 aa18.42■□□□□ 0.54
VIM-201ENST00000224237 ACE2Q9BYF1 805 aaPredicted RBP18.42■□□□□ 0.54
VIM-201ENST00000224237 MUC3BQ9H195 1237 aa18.42■□□□□ 0.54
VIM-201ENST00000224237 FAM237BA0A1B0GVD1 139 aa18.41■□□□□ 0.54
VIM-201ENST00000224237 TMEM120BA0PK00 339 aa18.41■□□□□ 0.54
VIM-201ENST00000224237 FOXO6A8MYZ6 492 aa18.41■□□□□ 0.54
VIM-201ENST00000224237 LEFTY2O00292 366 aa18.41■□□□□ 0.54
VIM-201ENST00000224237 LUC7L3O95232 432 aaKnown RBP18.41■□□□□ 0.54
VIM-201ENST00000224237 CREB1P16220 341 aa18.41■□□□□ 0.54
VIM-201ENST00000224237 AVPR1AP37288 418 aa18.41■□□□□ 0.54
VIM-201ENST00000224237 CERCAMQ5T4B2 595 aa18.41■□□□□ 0.54
VIM-201ENST00000224237 KDELC1Q6UW63 502 aa18.41■□□□□ 0.54
VIM-201ENST00000224237 CMTM8Q8IZV2 173 aa18.41■□□□□ 0.54
VIM-201ENST00000224237 MDM1Q8TC05 714 aa18.41■□□□□ 0.54
VIM-201ENST00000224237 GDPD5Q8WTR4 605 aa18.41■□□□□ 0.54
VIM-201ENST00000224237 CENPTQ96BT3 561 aa18.41■□□□□ 0.54
VIM-201ENST00000224237 SMC6Q96SB8 1091 aa18.41■□□□□ 0.54
VIM-201ENST00000224237 SMG9Q9H0W8 520 aaKnown RBP18.41■□□□□ 0.54
VIM-201ENST00000224237 TRABDQ9H4I3 376 aa18.41■□□□□ 0.54
VIM-201ENST00000224237 SMYD2Q9NRG4 433 aa18.41■□□□□ 0.54
VIM-201ENST00000224237 UBA2Q9UBT2 640 aaPredicted RBP18.41■□□□□ 0.54
VIM-201ENST00000224237 SOX13Q9UN79 622 aa18.41■□□□□ 0.54
VIM-201ENST00000224237 HCFC2Q9Y5Z7 792 aa18.41■□□□□ 0.54
VIM-201ENST00000224237 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP18.41■□□□□ 0.54
VIM-201ENST00000224237 CXorf49A8MYA2 514 aaPredicted RBP18.41■□□□□ 0.54
VIM-201ENST00000224237 POU2F2P09086 479 aa18.41■□□□□ 0.54
VIM-201ENST00000224237 LSP1P33241 339 aa18.41■□□□□ 0.54
VIM-201ENST00000224237 CD86P42081 329 aa18.41■□□□□ 0.54
VIM-201ENST00000224237 WNT3AP56704 352 aa18.41■□□□□ 0.54
VIM-201ENST00000224237 NTHL1P78549 312 aa18.41■□□□□ 0.54
VIM-201ENST00000224237 DSC2Q02487 901 aa18.41■□□□□ 0.54
VIM-201ENST00000224237 NIPAL4Q0D2K0 466 aa18.41■□□□□ 0.54
VIM-201ENST00000224237 NAB1Q13506 487 aa18.41■□□□□ 0.54
VIM-201ENST00000224237 FRG1Q14331 258 aaKnown RBP18.41■□□□□ 0.54
VIM-201ENST00000224237 TEAD2Q15562 447 aa18.41■□□□□ 0.54
VIM-201ENST00000224237 LGSNQ5TDP6 509 aa18.41■□□□□ 0.54
VIM-201ENST00000224237 RNF219Q5W0B1 726 aaPredicted RBP18.41■□□□□ 0.54
VIM-201ENST00000224237 ALG1LQ6GMV1 187 aa18.41■□□□□ 0.54
VIM-201ENST00000224237 RANBP10Q6VN20 620 aa18.41■□□□□ 0.54
VIM-201ENST00000224237 PGBD5Q8N414 524 aa18.41■□□□□ 0.54
VIM-201ENST00000224237 CARNMT1Q8N4J0 409 aa18.41■□□□□ 0.54
VIM-201ENST00000224237 TDRD5Q8NAT2 981 aaKnown RBP18.41■□□□□ 0.54
VIM-201ENST00000224237 MZB1Q8WU39 189 aa18.41■□□□□ 0.54
VIM-201ENST00000224237 TASP1Q9H6P5 420 aa18.41■□□□□ 0.54
VIM-201ENST00000224237 PPANQ9NQ55 473 aaKnown RBP18.41■□□□□ 0.54
VIM-201ENST00000224237 INTS9Q9NV88 658 aaKnown RBP18.41■□□□□ 0.54
VIM-201ENST00000224237 SEPT3Q9UH03 358 aa18.41■□□□□ 0.54
VIM-201ENST00000224237 EPOPA6NHQ4 379 aa18.4■□□□□ 0.54
VIM-201ENST00000224237 MOSPD3O75425 235 aa18.4■□□□□ 0.54
VIM-201ENST00000224237 MMP2P08253 660 aa18.4■□□□□ 0.54
VIM-201ENST00000224237 CDH18Q13634 790 aa18.4■□□□□ 0.54
VIM-201ENST00000224237 MPP7Q5T2T1 576 aa18.4■□□□□ 0.54
VIM-201ENST00000224237 DENND5AQ6IQ26 1287 aa18.4■□□□□ 0.54
VIM-201ENST00000224237 POTEHQ6S545 545 aa18.4■□□□□ 0.54
VIM-201ENST00000224237 MARK2Q7KZI7 788 aaKnown RBP18.4■□□□□ 0.54
VIM-201ENST00000224237 BBS7Q8IWZ6 715 aa18.4■□□□□ 0.54
VIM-201ENST00000224237 SERBP1Q8NC51 408 aaKnown RBP eCLIP18.4■□□□□ 0.543e-7■■■■■ 36.2
VIM-201ENST00000224237 ARRDC2Q8TBH0 407 aa18.4■□□□□ 0.54
VIM-201ENST00000224237 TADA1Q96BN2 335 aa18.4■□□□□ 0.54
VIM-201ENST00000224237 ZNF669Q96BR6 464 aaPredicted RBP18.4■□□□□ 0.54
VIM-201ENST00000224237 CERS2Q96G23 380 aa18.4■□□□□ 0.54
VIM-201ENST00000224237 PSKH2Q96QS6 385 aa18.4■□□□□ 0.54
VIM-201ENST00000224237 MGME1Q9BQP7 344 aa18.4■□□□□ 0.54
VIM-201ENST00000224237 PRKD2Q9BZL6 878 aa18.4■□□□□ 0.54
VIM-201ENST00000224237 KCNK9Q9NPC2 374 aa18.4■□□□□ 0.54
VIM-201ENST00000224237 ZMYM5Q9UJ78 669 aa18.4■□□□□ 0.54
VIM-201ENST00000224237 E2F8A0AVK6 867 aa18.39■□□□□ 0.54
VIM-201ENST00000224237 KRT37O76014 449 aa18.39■□□□□ 0.54
VIM-201ENST00000224237 TPH1P17752 444 aa18.39■□□□□ 0.54
VIM-201ENST00000224237 PPARDQ03181 441 aa18.39■□□□□ 0.54
VIM-201ENST00000224237 PCSK7Q16549 785 aa18.39■□□□□ 0.54
VIM-201ENST00000224237 SLC5A9Q2M3M2 681 aa18.39■□□□□ 0.54
VIM-201ENST00000224237 MPPE1Q53F39 396 aa18.39■□□□□ 0.54
VIM-201ENST00000224237 PCID2Q5JVF3 399 aa18.39■□□□□ 0.54
VIM-201ENST00000224237 ARMC3Q5W041 872 aa18.39■□□□□ 0.54
VIM-201ENST00000224237 PPP2R2DQ66LE6 453 aa18.39■□□□□ 0.54
VIM-201ENST00000224237 CNPY4Q8N129 248 aa18.39■□□□□ 0.54
VIM-201ENST00000224237 SH3RF2Q8TEC5 729 aa18.39■□□□□ 0.54
VIM-201ENST00000224237 PTCD2Q8WV60 388 aaKnown RBP18.39■□□□□ 0.54
VIM-201ENST00000224237 GDF15Q99988 308 aa18.39■□□□□ 0.54
VIM-201ENST00000224237 KIFC1Q9BW19 673 aa18.39■□□□□ 0.54
VIM-201ENST00000224237 CINPQ9BW66 212 aaPredicted RBP18.39■□□□□ 0.54
VIM-201ENST00000224237 ARNT2Q9HBZ2 717 aa18.39■□□□□ 0.54
VIM-201ENST00000224237 FAM169AQ9Y6X4 670 aa18.39■□□□□ 0.54
VIM-201ENST00000224237 MIA3Q5JRA6 1907 aa18.39■□□□□ 0.54
VIM-201ENST00000224237 NOTCH4Q99466 2003 aa18.39■□□□□ 0.54
VIM-201ENST00000224237 SRRM3A6NNA2 597 aaPredicted RBP18.39■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms