RNA–Protein interactions for RNA: ENST00000626109.1

LINC00538-201, long intergenic non-protein coding RNA 538, humanhuman

BASIC

Gene LINC00538, Length 1,906 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00538-201ENST00000626109 CAPRIN2Q6IMN6 1127 aaKnown RBP11.84□□□□□ -0.51
LINC00538-201ENST00000626109 KIAA1841Q6NSI8 718 aa11.84□□□□□ -0.51
LINC00538-201ENST00000626109 DDX53Q86TM3 631 aaKnown RBP11.84□□□□□ -0.51
LINC00538-201ENST00000626109 CCDC25Q86WR0 208 aa11.84□□□□□ -0.51
LINC00538-201ENST00000626109 CEP57Q86XR8 500 aa11.84□□□□□ -0.51
LINC00538-201ENST00000626109 ZDHHC14Q8IZN3 488 aa11.84□□□□□ -0.51
LINC00538-201ENST00000626109 FAM9CQ8IZT9 166 aa11.84□□□□□ -0.51
LINC00538-201ENST00000626109 OR8H3Q8N146 312 aa11.84□□□□□ -0.51
LINC00538-201ENST00000626109 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.84□□□□□ -0.51
LINC00538-201ENST00000626109 RNF139Q8WU17 664 aa11.84□□□□□ -0.51
LINC00538-201ENST00000626109 DYDC1Q8WWB3 177 aa11.84□□□□□ -0.51
LINC00538-201ENST00000626109 SDCBP2Q9H190 292 aa11.84□□□□□ -0.51
LINC00538-201ENST00000626109 MRPL46Q9H2W6 279 aaKnown RBP11.84□□□□□ -0.51
LINC00538-201ENST00000626109 SNX25Q9H3E2 840 aa11.84□□□□□ -0.51
LINC00538-201ENST00000626109 SIRT5Q9NXA8 310 aa11.84□□□□□ -0.51
LINC00538-201ENST00000626109 CHORDC1Q9UHD1 332 aaPredicted RBP11.84□□□□□ -0.51
LINC00538-201ENST00000626109 TIMM13Q9Y5L4 95 aaPredicted RBP11.84□□□□□ -0.51
LINC00538-201ENST00000626109 AP1M2Q9Y6Q5 423 aa11.84□□□□□ -0.51
LINC00538-201ENST00000626109 GBF1Q92538 1859 aa11.84□□□□□ -0.51
LINC00538-201ENST00000626109 PGPEP1LA6NFU8 196 aa11.84□□□□□ -0.51
LINC00538-201ENST00000626109 CCT8L1PA6NM43 557 aa11.84□□□□□ -0.51
LINC00538-201ENST00000626109 TXNL1O43396 289 aa11.84□□□□□ -0.51
LINC00538-201ENST00000626109 PSTPIP1O43586 416 aa11.84□□□□□ -0.51
LINC00538-201ENST00000626109 GSTA1P08263 222 aa11.84□□□□□ -0.51
LINC00538-201ENST00000626109 DHRS4L1P0CG22 281 aa11.84□□□□□ -0.51
LINC00538-201ENST00000626109 ATF2P15336 505 aa11.84□□□□□ -0.51
LINC00538-201ENST00000626109 FGFR3P22607 806 aa11.84□□□□□ -0.51
LINC00538-201ENST00000626109 WARSP23381 471 aaKnown RBP11.84□□□□□ -0.51
LINC00538-201ENST00000626109 TKTP29401 623 aaKnown RBP11.84□□□□□ -0.51
LINC00538-201ENST00000626109 IDUAP35475 653 aa11.84□□□□□ -0.51
LINC00538-201ENST00000626109 KCNJ1P48048 391 aa11.84□□□□□ -0.51
LINC00538-201ENST00000626109 LHX1P48742 406 aa11.84□□□□□ -0.51
LINC00538-201ENST00000626109 IFI35P80217 286 aaPredicted RBP11.84□□□□□ -0.51
LINC00538-201ENST00000626109 YWHAHQ04917 246 aaPredicted RBP11.84□□□□□ -0.51
LINC00538-201ENST00000626109 AUHQ13825 339 aaKnown RBP11.84□□□□□ -0.51
LINC00538-201ENST00000626109 GRIN2CQ14957 1233 aa11.84□□□□□ -0.51
LINC00538-201ENST00000626109 LRIT3Q3SXY7 679 aa11.84□□□□□ -0.51
LINC00538-201ENST00000626109 KRBOX4Q5JUW0 171 aa11.84□□□□□ -0.51
LINC00538-201ENST00000626109 OVOS1Q6IE37 1185 aa11.84□□□□□ -0.51
LINC00538-201ENST00000626109 ELMSAN1Q6PJG2 1045 aa11.84□□□□□ -0.51
LINC00538-201ENST00000626109 NXPE4Q6UWF7 544 aa11.84□□□□□ -0.51
LINC00538-201ENST00000626109 LIMS2Q7Z4I7 341 aa11.84□□□□□ -0.51
LINC00538-201ENST00000626109 OR6B3Q8NGW1 331 aa11.84□□□□□ -0.51
LINC00538-201ENST00000626109 CCHCR1Q8TD31 782 aa11.84□□□□□ -0.51
LINC00538-201ENST00000626109 SCG3Q8WXD2 468 aaKnown RBP11.84□□□□□ -0.51
LINC00538-201ENST00000626109 SLC39A7Q92504 469 aa11.84□□□□□ -0.51
LINC00538-201ENST00000626109 TTC1Q99614 292 aa11.84□□□□□ -0.51
LINC00538-201ENST00000626109 MRPL45Q9BRJ2 306 aaKnown RBP11.84□□□□□ -0.51
LINC00538-201ENST00000626109 SPATA9Q9BWV2 254 aa11.84□□□□□ -0.51
LINC00538-201ENST00000626109 OSBPL10Q9BXB5 764 aa11.84□□□□□ -0.51
LINC00538-201ENST00000626109 FOXP3Q9BZS1 431 aa11.84□□□□□ -0.51
LINC00538-201ENST00000626109 CISHQ9NSE2 258 aa11.84□□□□□ -0.51
LINC00538-201ENST00000626109 PCDHB4Q9Y5E5 795 aa11.84□□□□□ -0.51
LINC00538-201ENST00000626109 A0A087WV62 115 aa11.83□□□□□ -0.52
LINC00538-201ENST00000626109 A0A0G2JPF8 293 aa11.83□□□□□ -0.52
LINC00538-201ENST00000626109 TCRBV7S2A1N4TA0A589 114 aa11.83□□□□□ -0.52
LINC00538-201ENST00000626109 A6NHS1 94 aa11.83□□□□□ -0.52
LINC00538-201ENST00000626109 HNRNPCL3B7ZW38 293 aa11.83□□□□□ -0.52
LINC00538-201ENST00000626109 CHUKO15111 745 aa11.83□□□□□ -0.52
LINC00538-201ENST00000626109 RASSF9O75901 435 aa11.83□□□□□ -0.52
LINC00538-201ENST00000626109 URODP06132 367 aa11.83□□□□□ -0.52
LINC00538-201ENST00000626109 VIMP08670 466 aaKnown RBP11.83□□□□□ -0.52
LINC00538-201ENST00000626109 HNRNPCL4P0DMR1 293 aa11.83□□□□□ -0.52
LINC00538-201ENST00000626109 S100A5P33763 92 aa11.83□□□□□ -0.52
LINC00538-201ENST00000626109 ADCY8P40145 1251 aa11.83□□□□□ -0.52
LINC00538-201ENST00000626109 SCTRP47872 440 aa11.83□□□□□ -0.52
LINC00538-201ENST00000626109 GLUD2P49448 558 aa11.83□□□□□ -0.52
LINC00538-201ENST00000626109 CLNS1AP54105 237 aaKnown RBP11.83□□□□□ -0.52
LINC00538-201ENST00000626109 UBE3AQ05086 875 aa11.83□□□□□ -0.52
LINC00538-201ENST00000626109 INCA1Q0VD86 236 aa11.83□□□□□ -0.52
LINC00538-201ENST00000626109 PKDCCQ504Y2 493 aa11.83□□□□□ -0.52
LINC00538-201ENST00000626109 SH2D4BQ5SQS7 431 aa11.83□□□□□ -0.52
LINC00538-201ENST00000626109 RGS9BPQ6ZS82 235 aa11.83□□□□□ -0.52
LINC00538-201ENST00000626109 PIGWQ7Z7B1 504 aa11.83□□□□□ -0.52
LINC00538-201ENST00000626109 RHOT1Q8IXI2 618 aa11.83□□□□□ -0.52
LINC00538-201ENST00000626109 THEM5Q8N1Q8 247 aa11.83□□□□□ -0.52
LINC00538-201ENST00000626109 KBTBD7Q8WVZ9 684 aa11.83□□□□□ -0.52
LINC00538-201ENST00000626109 C1orf54Q8WWF1 131 aa11.83□□□□□ -0.52
LINC00538-201ENST00000626109 HSPBAP1Q96EW2 488 aa11.83□□□□□ -0.52
LINC00538-201ENST00000626109 PRMT1Q99873 361 aaKnown RBP11.83□□□□□ -0.52
LINC00538-201ENST00000626109 VN1R3Q9BXE9 311 aa11.83□□□□□ -0.52
LINC00538-201ENST00000626109 GHITMQ9H3K2 345 aa11.83□□□□□ -0.52
LINC00538-201ENST00000626109 ACP6Q9NPH0 428 aa11.83□□□□□ -0.52
LINC00538-201ENST00000626109 ADGRE2Q9UHX3 823 aa11.83□□□□□ -0.52
LINC00538-201ENST00000626109 ANAPC5Q9UJX4 755 aa11.83□□□□□ -0.52
LINC00538-201ENST00000626109 PCDHGA10Q9Y5H3 936 aa11.83□□□□□ -0.52
LINC00538-201ENST00000626109 A8MXQ7 604 aa11.82□□□□□ -0.52
LINC00538-201ENST00000626109 H7C4K7 107 aa11.82□□□□□ -0.52
LINC00538-201ENST00000626109 DNAJC8O75937 253 aaPredicted RBP11.82□□□□□ -0.52
LINC00538-201ENST00000626109 PROSCO94903 275 aa11.82□□□□□ -0.52
LINC00538-201ENST00000626109 ENDOD1O94919 500 aa11.82□□□□□ -0.52
LINC00538-201ENST00000626109 TTC4O95801 387 aa11.82□□□□□ -0.52
LINC00538-201ENST00000626109 EFEMP2O95967 443 aa11.82□□□□□ -0.52
LINC00538-201ENST00000626109 NR1H2P55055 460 aa11.82□□□□□ -0.52
LINC00538-201ENST00000626109 SNX1Q13596 522 aa11.82□□□□□ -0.52
LINC00538-201ENST00000626109 VARS2Q5ST30 1063 aaKnown RBP11.82□□□□□ -0.52
LINC00538-201ENST00000626109 TMEM270Q6UE05 265 aa11.82□□□□□ -0.52
LINC00538-201ENST00000626109 SPRED2Q7Z698 418 aa11.82□□□□□ -0.52
LINC00538-201ENST00000626109 UNC93AQ86WB7 457 aa11.82□□□□□ -0.52
LINC00538-201ENST00000626109 OSTM1Q86WC4 334 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms