RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 LRRC6Q86X45 466 aa23.06■■□□□ 1.28
CDX1-201ENST00000231656 DENND1CQ8IV53 801 aa23.06■■□□□ 1.28
CDX1-201ENST00000231656 PPM1NQ8N819 430 aa23.06■■□□□ 1.28
CDX1-201ENST00000231656 SMG7Q92540 1137 aaKnown RBP23.06■■□□□ 1.28
CDX1-201ENST00000231656 WBP2Q969T9 261 aa23.06■■□□□ 1.28
CDX1-201ENST00000231656 SFXN1Q9H9B4 322 aa23.06■■□□□ 1.28
CDX1-201ENST00000231656 RRP15Q9Y3B9 282 aaKnown RBP23.06■■□□□ 1.28
CDX1-201ENST00000231656 FAM169AQ9Y6X4 670 aa23.06■■□□□ 1.28
CDX1-201ENST00000231656 HELZP42694 1942 aaKnown RBP23.05■■□□□ 1.28
CDX1-201ENST00000231656 ACSL4O60488 711 aa23.05■■□□□ 1.28
CDX1-201ENST00000231656 AP2A1O95782 977 aa23.05■■□□□ 1.28
CDX1-201ENST00000231656 MGAT1P26572 445 aa23.05■■□□□ 1.28
CDX1-201ENST00000231656 CORO1AP31146 461 aaKnown RBP23.05■■□□□ 1.28
CDX1-201ENST00000231656 SLC11A2P49281 568 aa23.05■■□□□ 1.28
CDX1-201ENST00000231656 HYAL1Q12794 435 aa23.05■■□□□ 1.28
CDX1-201ENST00000231656 TEAD2Q15562 447 aa23.05■■□□□ 1.28
CDX1-201ENST00000231656 TCEAL5Q5H9L2 206 aa23.05■■□□□ 1.28
CDX1-201ENST00000231656 GPR158Q5T848 1215 aa23.05■■□□□ 1.28
CDX1-201ENST00000231656 KCTD11Q693B1 232 aa23.05■■□□□ 1.28
CDX1-201ENST00000231656 MICALCLQ6ZW33 695 aa23.05■■□□□ 1.28
CDX1-201ENST00000231656 CYS1Q717R9 158 aa23.05■■□□□ 1.28
CDX1-201ENST00000231656 CACNA2D3Q8IZS8 1091 aa23.05■■□□□ 1.28
CDX1-201ENST00000231656 LZTR1Q8N653 840 aa23.05■■□□□ 1.28
CDX1-201ENST00000231656 ADAMTS19Q8TE59 1207 aa23.05■■□□□ 1.28
CDX1-201ENST00000231656 AZIN2Q96A70 460 aa23.05■■□□□ 1.28
CDX1-201ENST00000231656 TEKT5Q96M29 485 aa23.05■■□□□ 1.28
CDX1-201ENST00000231656 PIDD1Q9HB75 910 aa23.05■■□□□ 1.28
CDX1-201ENST00000231656 GOLGA6L7A0A1B0GV03 622 aa23.04■■□□□ 1.28
CDX1-201ENST00000231656 GLP2RO95838 553 aa23.04■■□□□ 1.28
CDX1-201ENST00000231656 CA4P22748 312 aa23.04■■□□□ 1.28
CDX1-201ENST00000231656 DDX6P26196 483 aaKnown RBP eCLIP23.04■■□□□ 1.28
CDX1-201ENST00000231656 SESN2P58004 480 aaPredicted RBP23.04■■□□□ 1.28
CDX1-201ENST00000231656 IL9RQ01113 521 aa23.04■■□□□ 1.28
CDX1-201ENST00000231656 SPARCL1Q14515 664 aa23.04■■□□□ 1.28
CDX1-201ENST00000231656 AFMIDQ63HM1 303 aa23.04■■□□□ 1.28
CDX1-201ENST00000231656 ITPRIPL1Q6GPH6 555 aa23.04■■□□□ 1.28
CDX1-201ENST00000231656 CTAGE3PQ8IX95 158 aa23.04■■□□□ 1.28
CDX1-201ENST00000231656 BANPQ8N9N5 519 aa23.04■■□□□ 1.28
CDX1-201ENST00000231656 AGAP3Q96P47 875 aa23.04■■□□□ 1.28
CDX1-201ENST00000231656 NSRP1Q9H0G5 558 aaKnown RBP23.04■■□□□ 1.28
CDX1-201ENST00000231656 DZANK1Q9NVP4 752 aa23.04■■□□□ 1.28
CDX1-201ENST00000231656 MOCS1Q9NZB8 636 aa23.04■■□□□ 1.28
CDX1-201ENST00000231656 IGLV3-10A0A075B6K4 115 aa23.04■■□□□ 1.28
CDX1-201ENST00000231656 A0A1W2PPC1 479 aa23.04■■□□□ 1.28
CDX1-201ENST00000231656 FAM155BO75949 473 aa23.04■■□□□ 1.28
CDX1-201ENST00000231656 ALDH1A2O94788 518 aa23.04■■□□□ 1.28
CDX1-201ENST00000231656 CCNCP24863 283 aa23.04■■□□□ 1.28
CDX1-201ENST00000231656 FOXN2P32314 431 aa23.04■■□□□ 1.28
CDX1-201ENST00000231656 CRADDP78560 199 aa23.04■■□□□ 1.28
CDX1-201ENST00000231656 MLLT1Q03111 559 aaPredicted RBP23.04■■□□□ 1.28
CDX1-201ENST00000231656 SLC1A5Q15758 541 aa23.04■■□□□ 1.28
CDX1-201ENST00000231656 ARHGAP15Q53QZ3 475 aa23.04■■□□□ 1.28
CDX1-201ENST00000231656 FAM133BQ5BKY9 247 aaKnown RBP23.04■■□□□ 1.28
CDX1-201ENST00000231656 TTC39BQ5VTQ0 682 aaPredicted RBP23.04■■□□□ 1.28
CDX1-201ENST00000231656 FBXL22Q6P050 247 aa23.04■■□□□ 1.28
CDX1-201ENST00000231656 TMEM184AQ6ZMB5 413 aa23.04■■□□□ 1.28
CDX1-201ENST00000231656 ARHGAP36Q6ZRI8 547 aa23.04■■□□□ 1.28
CDX1-201ENST00000231656 SH2D5Q6ZV89 423 aa23.04■■□□□ 1.28
CDX1-201ENST00000231656 CHSY1Q86X52 802 aa23.04■■□□□ 1.28
CDX1-201ENST00000231656 ALKBH8Q96BT7 664 aaKnown RBP23.04■■□□□ 1.28
CDX1-201ENST00000231656 OXNAD1Q96HP4 312 aaPredicted RBP23.04■■□□□ 1.28
CDX1-201ENST00000231656 MLPHQ9BV36 600 aaPredicted RBP23.04■■□□□ 1.28
CDX1-201ENST00000231656 TASP1Q9H6P5 420 aa23.04■■□□□ 1.28
CDX1-201ENST00000231656 MPP6Q9NZW5 540 aa23.04■■□□□ 1.28
CDX1-201ENST00000231656 PPARGC1AQ9UBK2 798 aaKnown RBP23.04■■□□□ 1.28
CDX1-201ENST00000231656 C5orf42Q9H799 3197 aa23.04■■□□□ 1.28
CDX1-201ENST00000231656 ERI2A8K979 691 aaKnown RBP23.03■■□□□ 1.28
CDX1-201ENST00000231656 WASH4PA8MWX3 477 aa23.03■■□□□ 1.28
CDX1-201ENST00000231656 DFFAO00273 331 aa23.03■■□□□ 1.28
CDX1-201ENST00000231656 LINC01565O15544 149 aa23.03■■□□□ 1.28
CDX1-201ENST00000231656 JCHAINP01591 159 aa23.03■■□□□ 1.28
CDX1-201ENST00000231656 MT-ND3P03897 115 aa23.03■■□□□ 1.28
CDX1-201ENST00000231656 NFKB1P19838 968 aa23.03■■□□□ 1.28
CDX1-201ENST00000231656 TACR2P21452 398 aa23.03■■□□□ 1.28
CDX1-201ENST00000231656 CCNJLQ8IV13 435 aa23.03■■□□□ 1.28
CDX1-201ENST00000231656 EFHBQ8N7U6 833 aa23.03■■□□□ 1.28
CDX1-201ENST00000231656 RTL3Q8N8U3 475 aaKnown RBP23.03■■□□□ 1.28
CDX1-201ENST00000231656 SERAC1Q96JX3 654 aa23.03■■□□□ 1.28
CDX1-201ENST00000231656 SLC39A8Q9C0K1 460 aa23.03■■□□□ 1.28
CDX1-201ENST00000231656 NDFIP2Q9NV92 336 aa23.03■■□□□ 1.28
CDX1-201ENST00000231656 PIH1D1Q9NWS0 290 aaKnown RBP23.03■■□□□ 1.28
CDX1-201ENST00000231656 SYBUQ9NX95 663 aa23.03■■□□□ 1.28
CDX1-201ENST00000231656 AGO1Q9UL18 857 aaKnown RBP23.03■■□□□ 1.28
CDX1-201ENST00000231656 ZNF197O14709 1029 aa23.02■■□□□ 1.28
CDX1-201ENST00000231656 GREM1O60565 184 aa23.02■■□□□ 1.28
CDX1-201ENST00000231656 UGT1A9O60656 530 aa23.02■■□□□ 1.28
CDX1-201ENST00000231656 ZWINTO95229 277 aa23.02■■□□□ 1.28
CDX1-201ENST00000231656 PGAM1P18669 254 aa23.02■■□□□ 1.28
CDX1-201ENST00000231656 TAC1P20366 129 aa23.02■■□□□ 1.28
CDX1-201ENST00000231656 SLC6A4P31645 630 aa23.02■■□□□ 1.28
CDX1-201ENST00000231656 GBP2P32456 591 aaPredicted RBP23.02■■□□□ 1.28
CDX1-201ENST00000231656 OLIG2Q13516 323 aa23.02■■□□□ 1.28
CDX1-201ENST00000231656 KLHDC8BQ8IXV7 354 aa23.02■■□□□ 1.28
CDX1-201ENST00000231656 CMTM8Q8IZV2 173 aa23.02■■□□□ 1.28
CDX1-201ENST00000231656 ATPAF2Q8N5M1 289 aa23.02■■□□□ 1.28
CDX1-201ENST00000231656 CNTD1Q8N815 330 aa23.02■■□□□ 1.28
CDX1-201ENST00000231656 IGSF8Q969P0 613 aa23.02■■□□□ 1.28
CDX1-201ENST00000231656 NAT9Q9BTE0 207 aa23.02■■□□□ 1.28
CDX1-201ENST00000231656 UGT1A7Q9HAW7 530 aa23.02■■□□□ 1.28
CDX1-201ENST00000231656 UGT1A10Q9HAW8 530 aa23.02■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms