RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 DCLK1O15075 740 aa26.3■■□□□ 1.8
TRIM28-204ENST00000594806 SPOPO43791 374 aa26.3■■□□□ 1.8
TRIM28-204ENST00000594806 BUB1BO60566 1050 aaPredicted RBP26.3■■□□□ 1.8
TRIM28-204ENST00000594806 RHOBTB1O94844 696 aa26.3■■□□□ 1.8
TRIM28-204ENST00000594806 IGLV3-19P01714 112 aa26.3■■□□□ 1.8
TRIM28-204ENST00000594806 OXTRP30559 389 aa26.3■■□□□ 1.8
TRIM28-204ENST00000594806 SERPINB6P35237 376 aa26.3■■□□□ 1.8
TRIM28-204ENST00000594806 RPS14P62263 151 aaKnown RBP26.3■■□□□ 1.8
TRIM28-204ENST00000594806 SRSF5Q13243 272 aaKnown RBP26.3■■□□□ 1.8
TRIM28-204ENST00000594806 SPDYCQ5MJ68 293 aa26.3■■□□□ 1.8
TRIM28-204ENST00000594806 ZFYVE27Q5T4F4 411 aa26.3■■□□□ 1.8
TRIM28-204ENST00000594806 PRR23BQ6ZRT6 265 aa26.3■■□□□ 1.8
TRIM28-204ENST00000594806 CPNE8Q86YQ8 564 aa26.3■■□□□ 1.8
TRIM28-204ENST00000594806 PLPP6Q8IY26 295 aa26.3■■□□□ 1.8
TRIM28-204ENST00000594806 PCDH20Q8N6Y1 951 aaKnown RBP26.3■■□□□ 1.8
TRIM28-204ENST00000594806 OR8D1Q8WZ84 308 aa26.3■■□□□ 1.8
TRIM28-204ENST00000594806 ERLEC1Q96DZ1 483 aa26.3■■□□□ 1.8
TRIM28-204ENST00000594806 HMCESQ96FZ2 354 aa26.3■■□□□ 1.8
TRIM28-204ENST00000594806 LOXL4Q96JB6 756 aa26.3■■□□□ 1.8
TRIM28-204ENST00000594806 KLC2Q9H0B6 622 aa26.3■■□□□ 1.8
TRIM28-204ENST00000594806 DDX56Q9NY93 547 aaKnown RBP26.3■■□□□ 1.8
TRIM28-204ENST00000594806 SMG5Q9UPR3 1016 aaKnown RBP26.3■■□□□ 1.8
TRIM28-204ENST00000594806 ALG6Q9Y672 507 aa26.3■■□□□ 1.8
TRIM28-204ENST00000594806 RCCD1A6NED2 376 aa26.29■■□□□ 1.8
TRIM28-204ENST00000594806 MCF2LO15068 1137 aa26.29■■□□□ 1.8
TRIM28-204ENST00000594806 DNTTP04053 509 aa26.29■■□□□ 1.8
TRIM28-204ENST00000594806 COMTP21964 271 aa26.29■■□□□ 1.8
TRIM28-204ENST00000594806 AMPD1P23109 780 aa26.29■■□□□ 1.8
TRIM28-204ENST00000594806 IL4RP24394 825 aa26.29■■□□□ 1.8
TRIM28-204ENST00000594806 GJC1P36383 396 aa26.29■■□□□ 1.8
TRIM28-204ENST00000594806 KIF5AQ12840 1032 aa26.29■■□□□ 1.8
TRIM28-204ENST00000594806 DPYSL3Q14195 570 aa26.29■■□□□ 1.8
TRIM28-204ENST00000594806 ELF2Q15723 593 aa26.29■■□□□ 1.8
TRIM28-204ENST00000594806 IFI16Q16666 785 aaKnown RBP26.29■■□□□ 1.8
TRIM28-204ENST00000594806 TTC31Q49AM3 519 aaPredicted RBP26.29■■□□□ 1.8
TRIM28-204ENST00000594806 ATP13A4Q4VNC1 1196 aa26.29■■□□□ 1.8
TRIM28-204ENST00000594806 INO80DQ53TQ3 878 aaPredicted RBP26.29■■□□□ 1.8
TRIM28-204ENST00000594806 LAIR1Q6GTX8 287 aa26.29■■□□□ 1.8
TRIM28-204ENST00000594806 LINGO4Q6UY18 593 aa26.29■■□□□ 1.8
TRIM28-204ENST00000594806 LRRC8AQ8IWT6 810 aa26.29■■□□□ 1.8
TRIM28-204ENST00000594806 TPCN2Q8NHX9 752 aa26.29■■□□□ 1.8
TRIM28-204ENST00000594806 FAM129BQ96TA1 746 aa26.29■■□□□ 1.8
TRIM28-204ENST00000594806 PHOX2BQ99453 314 aa26.29■■□□□ 1.8
TRIM28-204ENST00000594806 SLC39A8Q9C0K1 460 aa26.29■■□□□ 1.8
TRIM28-204ENST00000594806 MTG2Q9H4K7 406 aa26.29■■□□□ 1.8
TRIM28-204ENST00000594806 TFR2Q9UP52 801 aa26.29■■□□□ 1.8
TRIM28-204ENST00000594806 PSTPIP1O43586 416 aa26.28■■□□□ 1.8
TRIM28-204ENST00000594806 RECQLP46063 649 aaPredicted RBP26.28■■□□□ 1.8
TRIM28-204ENST00000594806 PLK5Q496M5 336 aa26.28■■□□□ 1.8
TRIM28-204ENST00000594806 C22orf39Q6P5X5 142 aa26.28■■□□□ 1.8
TRIM28-204ENST00000594806 ABCA7Q8IZY2 2146 aa26.28■■□□□ 1.8
TRIM28-204ENST00000594806 STK40Q8N2I9 435 aa26.28■■□□□ 1.8
TRIM28-204ENST00000594806 RLN3Q8WXF3 142 aa26.28■■□□□ 1.8
TRIM28-204ENST00000594806 FAF2Q96CS3 445 aa26.28■■□□□ 1.8
TRIM28-204ENST00000594806 CALN1Q9BXU9 219 aa26.28■■□□□ 1.8
TRIM28-204ENST00000594806 SLC6A17Q9H1V8 727 aa26.28■■□□□ 1.8
TRIM28-204ENST00000594806 IGHV1OR15-9A0A0B4J2B8 117 aa26.27■■□□□ 1.8
TRIM28-204ENST00000594806 K7ERQ8 282 aa26.27■■□□□ 1.8
TRIM28-204ENST00000594806 MAP3K13O43283 966 aa26.27■■□□□ 1.8
TRIM28-204ENST00000594806 SMAD6O43541 496 aaKnown RBP26.27■■□□□ 1.8
TRIM28-204ENST00000594806 BUB1O43683 1085 aa26.27■■□□□ 1.8
TRIM28-204ENST00000594806 CD160O95971 181 aa26.27■■□□□ 1.8
TRIM28-204ENST00000594806 ADH1BP00325 375 aa26.27■■□□□ 1.8
TRIM28-204ENST00000594806 KDELR1P24390 212 aa26.27■■□□□ 1.8
TRIM28-204ENST00000594806 TPMTP51580 245 aa26.27■■□□□ 1.8
TRIM28-204ENST00000594806 NAP1L1P55209 391 aaKnown RBP26.27■■□□□ 1.8
TRIM28-204ENST00000594806 FAM46CQ5VWP2 391 aa26.27■■□□□ 1.8
TRIM28-204ENST00000594806 Q6ZVU0 165 aa26.27■■□□□ 1.8
TRIM28-204ENST00000594806 USP30Q70CQ3 517 aa26.27■■□□□ 1.8
TRIM28-204ENST00000594806 LRRC49Q8IUZ0 686 aa26.27■■□□□ 1.8
TRIM28-204ENST00000594806 ARHGAP12Q8IWW6 846 aa26.27■■□□□ 1.8
TRIM28-204ENST00000594806 LACRTQ9GZZ8 138 aa26.27■■□□□ 1.8
TRIM28-204ENST00000594806 SBDSQ9Y3A5 250 aaKnown RBP eCLIP26.27■■□□□ 1.8
TRIM28-204ENST00000594806 THADAQ6YHU6 1953 aa26.27■■□□□ 1.8
TRIM28-204ENST00000594806 PRR23AA6NEV1 266 aa26.26■■□□□ 1.79
TRIM28-204ENST00000594806 VAV1P15498 845 aa26.26■■□□□ 1.79
TRIM28-204ENST00000594806 C5AR1P21730 350 aa26.26■■□□□ 1.79
TRIM28-204ENST00000594806 CD6P30203 668 aa26.26■■□□□ 1.79
TRIM28-204ENST00000594806 PAPOLAP51003 745 aaKnown RBP26.26■■□□□ 1.79
TRIM28-204ENST00000594806 CST6Q15828 149 aa26.26■■□□□ 1.79
TRIM28-204ENST00000594806 ODF2Q5BJF6 829 aa26.26■■□□□ 1.79
TRIM28-204ENST00000594806 ANKRD20A8PQ5CZ79 823 aa26.26■■□□□ 1.79
TRIM28-204ENST00000594806 DAAM2Q86T65 1068 aa26.26■■□□□ 1.79
TRIM28-204ENST00000594806 KBTBD6Q86V97 674 aa26.26■■□□□ 1.79
TRIM28-204ENST00000594806 MMAAQ8IVH4 418 aaKnown RBP26.26■■□□□ 1.79
TRIM28-204ENST00000594806 NPWQ8N729 165 aa26.26■■□□□ 1.79
TRIM28-204ENST00000594806 OR2A12Q8NGT7 310 aa26.26■■□□□ 1.79
TRIM28-204ENST00000594806 CELF6Q96J87 481 aaKnown RBP26.26■■□□□ 1.79
TRIM28-204ENST00000594806 TSGA10Q9BZW7 698 aa26.26■■□□□ 1.79
TRIM28-204ENST00000594806 DUSP15Q9H1R2 295 aaPredicted RBP26.26■■□□□ 1.79
TRIM28-204ENST00000594806 PABPC3Q9H361 631 aaKnown RBP26.26■■□□□ 1.79
TRIM28-204ENST00000594806 SALL4Q9UJQ4 1053 aa26.26■■□□□ 1.79
TRIM28-204ENST00000594806 CYP8B1Q9UNU6 501 aa26.26■■□□□ 1.79
TRIM28-204ENST00000594806 INVSQ9Y283 1065 aa26.26■■□□□ 1.79
TRIM28-204ENST00000594806 NCKAP1Q9Y2A7 1128 aa26.26■■□□□ 1.79
TRIM28-204ENST00000594806 C1QTNF3-AMACRE9PGA6 284 aa26.25■■□□□ 1.79
TRIM28-204ENST00000594806 PRAMEF11O60813 436 aa26.25■■□□□ 1.79
TRIM28-204ENST00000594806 CD48P09326 243 aa26.25■■□□□ 1.79
TRIM28-204ENST00000594806 PMS2CLQ68D20 193 aa26.25■■□□□ 1.79
TRIM28-204ENST00000594806 LPCAT2Q7L5N7 544 aa26.25■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms