RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 GORASP1Q9BQQ3 440 aa23.1■■□□□ 1.29
CDX1-201ENST00000231656 KLF16Q9BXK1 252 aaPredicted RBP23.1■■□□□ 1.29
CDX1-201ENST00000231656 SSU72Q9NP77 194 aaKnown RBP23.1■■□□□ 1.29
CDX1-201ENST00000231656 KLHL8Q9P2G9 620 aaPredicted RBP23.1■■□□□ 1.29
CDX1-201ENST00000231656 GGA2Q9UJY4 613 aa23.1■■□□□ 1.29
CDX1-201ENST00000231656 TYROBPO43914 113 aa23.09■■□□□ 1.29
CDX1-201ENST00000231656 FGF19O95750 216 aa23.09■■□□□ 1.29
CDX1-201ENST00000231656 SRGAP2BP0DMP2 458 aa23.09■■□□□ 1.29
CDX1-201ENST00000231656 WDR4P57081 412 aaKnown RBP23.09■■□□□ 1.29
CDX1-201ENST00000231656 MS4A13Q5J8X5 152 aa23.09■■□□□ 1.29
CDX1-201ENST00000231656 PPP2R3CQ969Q6 453 aa23.09■■□□□ 1.29
CDX1-201ENST00000231656 PLD4Q96BZ4 506 aa23.09■■□□□ 1.29
CDX1-201ENST00000231656 ZFRQ96KR1 1074 aaKnown RBP23.09■■□□□ 1.29
CDX1-201ENST00000231656 STC2O76061 302 aa23.09■■□□□ 1.29
CDX1-201ENST00000231656 NRG1Q02297 640 aaPredicted RBP23.09■■□□□ 1.29
CDX1-201ENST00000231656 STXBP5Q5T5C0 1151 aa23.09■■□□□ 1.29
CDX1-201ENST00000231656 RWDD4Q6NW29 188 aaKnown RBP23.09■■□□□ 1.29
CDX1-201ENST00000231656 SPATS2Q86XZ4 545 aaKnown RBP23.09■■□□□ 1.29
CDX1-201ENST00000231656 LEMD2Q8NC56 503 aa23.09■■□□□ 1.29
CDX1-201ENST00000231656 SHKBP1Q8TBC3 707 aa23.09■■□□□ 1.29
CDX1-201ENST00000231656 TBC1D31Q96DN5 1066 aa23.09■■□□□ 1.29
CDX1-201ENST00000231656 TCEAL4Q96EI5 215 aa23.09■■□□□ 1.29
CDX1-201ENST00000231656 SEC16BQ96JE7 1060 aa23.09■■□□□ 1.29
CDX1-201ENST00000231656 MAD1L1Q9Y6D9 718 aa23.09■■□□□ 1.29
CDX1-201ENST00000231656 FGF10O15520 208 aaPredicted RBP23.08■■□□□ 1.29
CDX1-201ENST00000231656 HARS2P49590 506 aaKnown RBP23.08■■□□□ 1.29
CDX1-201ENST00000231656 ZBTB17Q13105 803 aa23.08■■□□□ 1.29
CDX1-201ENST00000231656 MTA1Q13330 715 aa23.08■■□□□ 1.29
CDX1-201ENST00000231656 STEAP4Q687X5 459 aa23.08■■□□□ 1.29
CDX1-201ENST00000231656 GRASPQ7Z6J2 395 aaPredicted RBP23.08■■□□□ 1.29
CDX1-201ENST00000231656 C14orf80Q86SX3 495 aa23.08■■□□□ 1.29
CDX1-201ENST00000231656 ARHGAP12Q8IWW6 846 aa23.08■■□□□ 1.29
CDX1-201ENST00000231656 DOCK4Q8N1I0 1966 aa23.08■■□□□ 1.29
CDX1-201ENST00000231656 C12orf76Q8N812 135 aaPredicted RBP23.08■■□□□ 1.29
CDX1-201ENST00000231656 GSDMBQ8TAX9 411 aa23.08■■□□□ 1.29
CDX1-201ENST00000231656 GDAP1Q8TB36 358 aa23.08■■□□□ 1.29
CDX1-201ENST00000231656 CELF6Q96J87 481 aaKnown RBP23.08■■□□□ 1.29
CDX1-201ENST00000231656 TRIM56Q9BRZ2 755 aaKnown RBP23.08■■□□□ 1.29
CDX1-201ENST00000231656 IGFLR1Q9H665 355 aa23.08■■□□□ 1.29
CDX1-201ENST00000231656 SMPD4Q9NXE4 827 aa23.08■■□□□ 1.29
CDX1-201ENST00000231656 TRHDEQ9UKU6 1024 aa23.08■■□□□ 1.29
CDX1-201ENST00000231656 CXorf49A8MYA2 514 aaPredicted RBP23.07■■□□□ 1.28
CDX1-201ENST00000231656 E9PAM4 449 aa23.07■■□□□ 1.28
CDX1-201ENST00000231656 MOSPD3O75425 235 aa23.07■■□□□ 1.28
CDX1-201ENST00000231656 ASMTLO95671 621 aa23.07■■□□□ 1.28
CDX1-201ENST00000231656 CD68P34810 354 aaPredicted RBP23.07■■□□□ 1.28
CDX1-201ENST00000231656 NTHL1P78549 312 aa23.07■■□□□ 1.28
CDX1-201ENST00000231656 ZNF33AQ06730 810 aa23.07■■□□□ 1.28
CDX1-201ENST00000231656 SLC5A9Q2M3M2 681 aa23.07■■□□□ 1.28
CDX1-201ENST00000231656 LRIT3Q3SXY7 679 aa23.07■■□□□ 1.28
CDX1-201ENST00000231656 ZSCAN18Q8TBC5 510 aaPredicted RBP23.07■■□□□ 1.28
CDX1-201ENST00000231656 STAMBPL1Q96FJ0 436 aa23.07■■□□□ 1.28
CDX1-201ENST00000231656 SLC46A2Q9BY10 475 aa23.07■■□□□ 1.28
CDX1-201ENST00000231656 GBA3Q9H227 469 aa23.07■■□□□ 1.28
CDX1-201ENST00000231656 NSUN3Q9H649 340 aaKnown RBP23.07■■□□□ 1.28
CDX1-201ENST00000231656 SMYD2Q9NRG4 433 aa23.07■■□□□ 1.28
CDX1-201ENST00000231656 PRRC2BQ5JSZ5 2229 aaKnown RBP23.07■■□□□ 1.28
CDX1-201ENST00000231656 IQANK1A0A1B0GTG1 560 aa23.06■■□□□ 1.28
CDX1-201ENST00000231656 ZBTB24O43167 697 aaPredicted RBP23.06■■□□□ 1.28
CDX1-201ENST00000231656 PAPLNO95428 1278 aa23.06■■□□□ 1.28
CDX1-201ENST00000231656 CKMP06732 381 aa23.06■■□□□ 1.28
CDX1-201ENST00000231656 INHBAP08476 426 aa23.06■■□□□ 1.28
CDX1-201ENST00000231656 VIMP08670 466 aaKnown RBP23.06■■□□□ 1.28
CDX1-201ENST00000231656 IRF1P10914 325 aa23.06■■□□□ 1.28
CDX1-201ENST00000231656 PFKLP17858 780 aa23.06■■□□□ 1.28
CDX1-201ENST00000231656 KRT4P19013 534 aa23.06■■□□□ 1.28
CDX1-201ENST00000231656 ACBD5Q5T8D3 534 aaPredicted RBP23.06■■□□□ 1.28
CDX1-201ENST00000231656 GKAP1Q5VSY0 366 aaPredicted RBP23.06■■□□□ 1.28
CDX1-201ENST00000231656 RAP1GAP2Q684P5 730 aa23.06■■□□□ 1.28
CDX1-201ENST00000231656 NADSYN1Q6IA69 706 aa23.06■■□□□ 1.28
CDX1-201ENST00000231656 TMC5Q6UXY8 1006 aa23.06■■□□□ 1.28
CDX1-201ENST00000231656 PIGWQ7Z7B1 504 aa23.06■■□□□ 1.28
CDX1-201ENST00000231656 TAX1BP1Q86VP1 789 aa23.06■■□□□ 1.28
CDX1-201ENST00000231656 SLC26A11Q86WA9 606 aa23.06■■□□□ 1.28
CDX1-201ENST00000231656 ZNF683Q8IZ20 524 aa23.06■■□□□ 1.28
CDX1-201ENST00000231656 MAGEB18Q96M61 343 aa23.06■■□□□ 1.28
CDX1-201ENST00000231656 TSGA13Q96PP4 275 aa23.06■■□□□ 1.28
CDX1-201ENST00000231656 VAT1Q99536 393 aa23.06■■□□□ 1.28
CDX1-201ENST00000231656 CATSPERBQ9H7T0 1116 aa23.06■■□□□ 1.28
CDX1-201ENST00000231656 ZNF180Q9UJW8 692 aa23.06■■□□□ 1.28
CDX1-201ENST00000231656 VANGL2Q9ULK5 521 aa23.06■■□□□ 1.28
CDX1-201ENST00000231656 CPQQ9Y646 472 aa23.06■■□□□ 1.28
CDX1-201ENST00000231656 IKBKGQ9Y6K9 419 aa23.06■■□□□ 1.28
CDX1-201ENST00000231656 NYNRINQ9P2P1 1898 aaKnown RBP23.06■■□□□ 1.28
CDX1-201ENST00000231656 C2orf16Q68DN1 1984 aa23.06■■□□□ 1.28
CDX1-201ENST00000231656 ATXN2Q99700 1313 aaKnown RBP23.06■■□□□ 1.28
CDX1-201ENST00000231656 TRAV19A0A0A6YYK7 116 aa23.06■■□□□ 1.28
CDX1-201ENST00000231656 SDR42E2A6NKP2 422 aa23.06■■□□□ 1.28
CDX1-201ENST00000231656 FAM159BA6NKW6 160 aa23.06■■□□□ 1.28
CDX1-201ENST00000231656 TCP11X1B4DZS4 312 aa23.06■■□□□ 1.28
CDX1-201ENST00000231656 SUN1O94901 812 aa23.06■■□□□ 1.28
CDX1-201ENST00000231656 KLKB1P03952 638 aa23.06■■□□□ 1.28
CDX1-201ENST00000231656 RPA3P35244 121 aaPredicted RBP23.06■■□□□ 1.28
CDX1-201ENST00000231656 SLC7A9P82251 487 aa23.06■■□□□ 1.28
CDX1-201ENST00000231656 ZXDBP98169 803 aa23.06■■□□□ 1.28
CDX1-201ENST00000231656 TEX44Q53QW1 395 aa23.06■■□□□ 1.28
CDX1-201ENST00000231656 PRSS36Q5K4E3 855 aa23.06■■□□□ 1.28
CDX1-201ENST00000231656 TRMT10BQ6PF06 316 aaKnown RBP23.06■■□□□ 1.28
CDX1-201ENST00000231656 C6orf89Q6UWU4 347 aa23.06■■□□□ 1.28
CDX1-201ENST00000231656 SRLQ86TD4 932 aa23.06■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms