RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 PCDHA11Q9Y5I1 949 aa18.5■□□□□ 0.55
VIM-201ENST00000224237 J3KR12 359 aa18.49■□□□□ 0.55
VIM-201ENST00000224237 CCL16O15467 120 aa18.49■□□□□ 0.55
VIM-201ENST00000224237 CKMP06732 381 aa18.49■□□□□ 0.55
VIM-201ENST00000224237 SESN2P58004 480 aaPredicted RBP18.49■□□□□ 0.55
VIM-201ENST00000224237 RPS24P62847 133 aaKnown RBP18.49■□□□□ 0.55
VIM-201ENST00000224237 SLC7A9P82251 487 aa18.49■□□□□ 0.55
VIM-201ENST00000224237 TMED2Q15363 201 aa18.49■□□□□ 0.55
VIM-201ENST00000224237 MARC1Q5VT66 337 aa18.49■□□□□ 0.55
VIM-201ENST00000224237 UNC5AQ6ZN44 842 aa18.49■□□□□ 0.55
VIM-201ENST00000224237 LINC00523Q86TU6 105 aa18.49■□□□□ 0.55
VIM-201ENST00000224237 EXOC3L1Q86VI1 746 aa18.49■□□□□ 0.55
VIM-201ENST00000224237 MAB21L3Q8N8X9 362 aa18.49■□□□□ 0.55
VIM-201ENST00000224237 OR52K1Q8NGK4 314 aa18.49■□□□□ 0.55
VIM-201ENST00000224237 PABPC5Q96DU9 382 aaKnown RBP18.49■□□□□ 0.55
VIM-201ENST00000224237 OXNAD1Q96HP4 312 aaPredicted RBP18.49■□□□□ 0.55
VIM-201ENST00000224237 PAFAH2Q99487 392 aa18.49■□□□□ 0.55
VIM-201ENST00000224237 CORO1BQ9BR76 489 aa18.49■□□□□ 0.55
VIM-201ENST00000224237 DHRS4Q9BTZ2 278 aa18.49■□□□□ 0.55
VIM-201ENST00000224237 MAGEH1Q9H213 219 aa18.49■□□□□ 0.55
VIM-201ENST00000224237 CASS4Q9NQ75 786 aa18.49■□□□□ 0.55
VIM-201ENST00000224237 MAN1C1Q9NR34 630 aa18.49■□□□□ 0.55
VIM-201ENST00000224237 A0A1W2PRU2 124 aa18.48■□□□□ 0.55
VIM-201ENST00000224237 RFPL2O75678 378 aa18.48■□□□□ 0.55
VIM-201ENST00000224237 FGF19O95750 216 aa18.48■□□□□ 0.55
VIM-201ENST00000224237 GJA1P17302 382 aa18.48■□□□□ 0.55
VIM-201ENST00000224237 MGAT1P26572 445 aa18.48■□□□□ 0.55
VIM-201ENST00000224237 EFTUD2Q15029 972 aaKnown RBP eCLIP18.48■□□□□ 0.551e-6■■■■■ 65.9
VIM-201ENST00000224237 CASC4Q6P4E1 433 aa18.48■□□□□ 0.55
VIM-201ENST00000224237 DNAAF3Q8N9W5 541 aa18.48■□□□□ 0.55
VIM-201ENST00000224237 LSM7Q9UK45 103 aaKnown RBP18.48■□□□□ 0.55
VIM-201ENST00000224237 PRDM4Q9UKN5 801 aa18.48■□□□□ 0.55
VIM-201ENST00000224237 ACTL7BQ9Y614 415 aa18.48■□□□□ 0.55
VIM-201ENST00000224237 CHD5Q8TDI0 1954 aa18.48■□□□□ 0.55
VIM-201ENST00000224237 TRAV19A0A0A6YYK7 116 aa18.48■□□□□ 0.55
VIM-201ENST00000224237 H3BNC9 293 aa18.48■□□□□ 0.55
VIM-201ENST00000224237 SCAMP3O14828 347 aaKnown RBP18.48■□□□□ 0.55
VIM-201ENST00000224237 SHOX2O60902 331 aaPredicted RBP18.48■□□□□ 0.55
VIM-201ENST00000224237 MYL4P12829 197 aa18.48■□□□□ 0.55
VIM-201ENST00000224237 PGAM1P18669 254 aa18.48■□□□□ 0.55
VIM-201ENST00000224237 HOXA9P31269 272 aa18.48■□□□□ 0.55
VIM-201ENST00000224237 MSH2P43246 934 aa18.48■□□□□ 0.55
VIM-201ENST00000224237 GEMP55040 296 aa18.48■□□□□ 0.55
VIM-201ENST00000224237 GNA12Q03113 381 aa18.48■□□□□ 0.55
VIM-201ENST00000224237 TNK2Q07912 1038 aa18.48■□□□□ 0.55
VIM-201ENST00000224237 KBTBD12Q3ZCT8 623 aa18.48■□□□□ 0.55
VIM-201ENST00000224237 PDE12Q6L8Q7 609 aaKnown RBP18.48■□□□□ 0.55
VIM-201ENST00000224237 ADGRD1Q6QNK2 874 aa18.48■□□□□ 0.55
VIM-201ENST00000224237 Q6ZNB5 142 aa18.48■□□□□ 0.55
VIM-201ENST00000224237 SETD3Q86TU7 594 aaPredicted RBP18.48■□□□□ 0.55
VIM-201ENST00000224237 CYP4X1Q8N118 509 aa18.48■□□□□ 0.55
VIM-201ENST00000224237 TEX26Q8N6G2 289 aa18.48■□□□□ 0.55
VIM-201ENST00000224237 ADAMTS19Q8TE59 1207 aa18.48■□□□□ 0.55
VIM-201ENST00000224237 ARNTL2Q8WYA1 636 aa18.48■□□□□ 0.55
VIM-201ENST00000224237 TGS1Q96RS0 853 aaKnown RBP18.48■□□□□ 0.55
VIM-201ENST00000224237 PLAC1Q9HBJ0 212 aa18.48■□□□□ 0.55
VIM-201ENST00000224237 PIH1D1Q9NWS0 290 aaKnown RBP18.48■□□□□ 0.55
VIM-201ENST00000224237 UBP1Q9NZI7 540 aa18.48■□□□□ 0.55
VIM-201ENST00000224237 BFARQ9NZS9 450 aa18.48■□□□□ 0.55
VIM-201ENST00000224237 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP18.47■□□□□ 0.55
VIM-201ENST00000224237 TYW5A2RUC4 315 aaKnown RBP18.47■□□□□ 0.55
VIM-201ENST00000224237 GREM1O60565 184 aa18.47■□□□□ 0.55
VIM-201ENST00000224237 USP12O75317 370 aa18.47■□□□□ 0.55
VIM-201ENST00000224237 EPCAMP16422 314 aa18.47■□□□□ 0.55
VIM-201ENST00000224237 PRKCHP24723 683 aa18.47■□□□□ 0.55
VIM-201ENST00000224237 ACVRL1P37023 503 aa18.47■□□□□ 0.55
VIM-201ENST00000224237 EPHA5P54756 1037 aa18.47■□□□□ 0.55
VIM-201ENST00000224237 ZXDBP98169 803 aa18.47■□□□□ 0.55
VIM-201ENST00000224237 CDH17Q12864 832 aa18.47■□□□□ 0.55
VIM-201ENST00000224237 ZNF177Q13360 481 aaPredicted RBP18.47■□□□□ 0.55
VIM-201ENST00000224237 OLIG2Q13516 323 aa18.47■□□□□ 0.55
VIM-201ENST00000224237 STEAP4Q687X5 459 aa18.47■□□□□ 0.55
VIM-201ENST00000224237 CYS1Q717R9 158 aa18.47■□□□□ 0.55
VIM-201ENST00000224237 SPATA22Q8NHS9 363 aa18.47■□□□□ 0.55
VIM-201ENST00000224237 SLC25A51Q9H1U9 297 aa18.47■□□□□ 0.55
VIM-201ENST00000224237 HCFC1R1Q9NWW0 138 aa18.47■□□□□ 0.55
VIM-201ENST00000224237 SYBUQ9NX95 663 aa18.47■□□□□ 0.55
VIM-201ENST00000224237 SAMD15Q9P1V8 674 aa18.47■□□□□ 0.55
VIM-201ENST00000224237 ZNF510Q9Y2H8 683 aa18.47■□□□□ 0.55
VIM-201ENST00000224237 IKBKGQ9Y6K9 419 aa18.47■□□□□ 0.55
VIM-201ENST00000224237 TRANK1O15050 2925 aa18.46■□□□□ 0.55
VIM-201ENST00000224237 PDE4DIPQ5VU43 2346 aa18.46■□□□□ 0.55
VIM-201ENST00000224237 ILVBLA1L0T0 632 aa18.46■□□□□ 0.55
VIM-201ENST00000224237 PER2O15055 1255 aa18.46■□□□□ 0.55
VIM-201ENST00000224237 PRAMEF11O60813 436 aa18.46■□□□□ 0.55
VIM-201ENST00000224237 MT-CYBP00156 380 aaPredicted RBP18.46■□□□□ 0.55
VIM-201ENST00000224237 MDH1P40925 334 aaKnown RBP18.46■□□□□ 0.55
VIM-201ENST00000224237 SGSHP51688 502 aa18.46■□□□□ 0.55
VIM-201ENST00000224237 SLC10A7Q0GE19 358 aa18.46■□□□□ 0.55
VIM-201ENST00000224237 MPP3Q13368 585 aa18.46■□□□□ 0.55
VIM-201ENST00000224237 STXBP5Q5T5C0 1151 aa18.46■□□□□ 0.55
VIM-201ENST00000224237 MRRFQ96E11 262 aaKnown RBP18.46■□□□□ 0.55
VIM-201ENST00000224237 ZNF599Q96NL3 588 aa18.46■□□□□ 0.55
VIM-201ENST00000224237 SELENOSQ9BQE4 189 aa18.46■□□□□ 0.55
VIM-201ENST00000224237 NT5MQ9NPB1 228 aa18.46■□□□□ 0.55
VIM-201ENST00000224237 SENP1Q9P0U3 644 aa18.46■□□□□ 0.55
VIM-201ENST00000224237 TBC1D30Q9Y2I9 924 aa18.46■□□□□ 0.55
VIM-201ENST00000224237 A0A0D9SEW6 157 aa18.46■□□□□ 0.54
VIM-201ENST00000224237 TSPAN3O60637 253 aa18.46■□□□□ 0.54
VIM-201ENST00000224237 CLASP2O75122 1294 aaKnown RBP18.46■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms