RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 DNAAF3Q8N9W5 541 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 MAGEB18Q96M61 343 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 ZNF512Q96ME7 567 aaPredicted RBP17.2■□□□□ 0.34
LDLR-206ENST00000557958 NACA2Q9H009 215 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 TMEM248Q9NWD8 314 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 DNMT3LQ9UJW3 386 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 VANGL2Q9ULK5 521 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 FAM159BA6NKW6 160 aa17.19■□□□□ 0.34
LDLR-206ENST00000557958 TM9SF1O15321 606 aa17.19■□□□□ 0.34
LDLR-206ENST00000557958 SNRPAP09012 282 aaKnown RBP17.19■□□□□ 0.34
LDLR-206ENST00000557958 CNPP09543 421 aaKnown RBP17.19■□□□□ 0.34
LDLR-206ENST00000557958 DRD4P21917 467 aa17.19■□□□□ 0.34
LDLR-206ENST00000557958 CNTFP26441 200 aa17.19■□□□□ 0.34
LDLR-206ENST00000557958 MGAT1P26572 445 aa17.19■□□□□ 0.34
LDLR-206ENST00000557958 ATP5C1P36542 298 aaKnown RBP17.19■□□□□ 0.34
LDLR-206ENST00000557958 PBX2P40425 430 aa17.19■□□□□ 0.34
LDLR-206ENST00000557958 ALDH1A3P47895 512 aa17.19■□□□□ 0.34
LDLR-206ENST00000557958 VEPH1Q14D04 833 aa17.19■□□□□ 0.34
LDLR-206ENST00000557958 TAF12Q16514 161 aa17.19■□□□□ 0.34
LDLR-206ENST00000557958 CACNA2D3Q8IZS8 1091 aa17.19■□□□□ 0.34
LDLR-206ENST00000557958 MPP5Q8N3R9 675 aa17.19■□□□□ 0.34
LDLR-206ENST00000557958 ANKS4BQ8N8V4 417 aa17.19■□□□□ 0.34
LDLR-206ENST00000557958 SLC39A8Q9C0K1 460 aa17.19■□□□□ 0.34
LDLR-206ENST00000557958 MPP6Q9NZW5 540 aa17.19■□□□□ 0.34
LDLR-206ENST00000557958 SSX2IPQ9Y2D8 614 aa17.19■□□□□ 0.34
LDLR-206ENST00000557958 IGLV3-10A0A075B6K4 115 aa17.18■□□□□ 0.34
LDLR-206ENST00000557958 MAGEB16A2A368 324 aa17.18■□□□□ 0.34
LDLR-206ENST00000557958 MAFKO60675 156 aa17.18■□□□□ 0.34
LDLR-206ENST00000557958 SPAG7O75391 227 aa17.18■□□□□ 0.34
LDLR-206ENST00000557958 ALDH1A2O94788 518 aa17.18■□□□□ 0.34
LDLR-206ENST00000557958 ABLIM3O94929 683 aa17.18■□□□□ 0.34
LDLR-206ENST00000557958 CD68P34810 354 aaPredicted RBP17.18■□□□□ 0.34
LDLR-206ENST00000557958 NPY2RP49146 381 aa17.18■□□□□ 0.34
LDLR-206ENST00000557958 RAB33AQ14088 237 aa17.18■□□□□ 0.34
LDLR-206ENST00000557958 SPANXN3Q5MJ09 141 aa17.18■□□□□ 0.34
LDLR-206ENST00000557958 SNX30Q5VWJ9 437 aa17.18■□□□□ 0.34
LDLR-206ENST00000557958 KCTD11Q693B1 232 aa17.18■□□□□ 0.34
LDLR-206ENST00000557958 KLHDC10Q6PID8 442 aa17.18■□□□□ 0.34
LDLR-206ENST00000557958 C14orf80Q86SX3 495 aa17.18■□□□□ 0.34
LDLR-206ENST00000557958 GDAP1Q8TB36 358 aa17.18■□□□□ 0.34
LDLR-206ENST00000557958 MZB1Q8WU39 189 aa17.18■□□□□ 0.34
LDLR-206ENST00000557958 FATE1Q969F0 183 aa17.18■□□□□ 0.34
LDLR-206ENST00000557958 IL12RB2Q99665 862 aa17.18■□□□□ 0.34
LDLR-206ENST00000557958 RETREG1Q9H6L5 497 aa17.18■□□□□ 0.34
LDLR-206ENST00000557958 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.18■□□□□ 0.34
LDLR-206ENST00000557958 MOCS1Q9NZB8 636 aa17.18■□□□□ 0.34
LDLR-206ENST00000557958 RWDD3Q9Y3V2 267 aa17.18■□□□□ 0.34
LDLR-206ENST00000557958 ZNF638Q14966 1978 aaKnown RBP17.18■□□□□ 0.34
LDLR-206ENST00000557958 KIAA1671Q9BY89 1806 aa17.18■□□□□ 0.34
LDLR-206ENST00000557958 A0A1W2PPM1 405 aa17.18■□□□□ 0.34
LDLR-206ENST00000557958 TYROBPO43914 113 aa17.18■□□□□ 0.34
LDLR-206ENST00000557958 TBX18O95935 607 aa17.18■□□□□ 0.34
LDLR-206ENST00000557958 DNAJB1P25685 340 aa17.18■□□□□ 0.34
LDLR-206ENST00000557958 CREMQ03060 361 aa17.18■□□□□ 0.34
LDLR-206ENST00000557958 MPP2Q14168 576 aa17.18■□□□□ 0.34
LDLR-206ENST00000557958 CRYMQ14894 314 aa17.18■□□□□ 0.34
LDLR-206ENST00000557958 HHATQ5VTY9 493 aa17.18■□□□□ 0.34
LDLR-206ENST00000557958 PRPF39Q86UA1 669 aaKnown RBP17.18■□□□□ 0.34
LDLR-206ENST00000557958 SPPL3Q8TCT6 385 aa17.18■□□□□ 0.34
LDLR-206ENST00000557958 NSMCE1Q8WV22 266 aa17.18■□□□□ 0.34
LDLR-206ENST00000557958 TGS1Q96RS0 853 aaKnown RBP17.18■□□□□ 0.34
LDLR-206ENST00000557958 IL22Q9GZX6 179 aa17.18■□□□□ 0.34
LDLR-206ENST00000557958 KIF9Q9HAQ2 790 aa17.18■□□□□ 0.34
LDLR-206ENST00000557958 CASS4Q9NQ75 786 aa17.18■□□□□ 0.34
LDLR-206ENST00000557958 MAFFQ9ULX9 164 aa17.18■□□□□ 0.34
LDLR-206ENST00000557958 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP17.17■□□□□ 0.34
LDLR-206ENST00000557958 HIDE1A8MVS5 230 aa17.17■□□□□ 0.34
LDLR-206ENST00000557958 LPXNO60711 386 aa17.17■□□□□ 0.34
LDLR-206ENST00000557958 KIAA0754O94854 1291 aa17.17■□□□□ 0.34
LDLR-206ENST00000557958 C1QAP02745 245 aa17.17■□□□□ 0.34
LDLR-206ENST00000557958 PPP3CCP48454 512 aa17.17■□□□□ 0.34
LDLR-206ENST00000557958 HARS2P49590 506 aaKnown RBP17.17■□□□□ 0.34
LDLR-206ENST00000557958 PAPOLAP51003 745 aaKnown RBP17.17■□□□□ 0.34
LDLR-206ENST00000557958 RENBPP51606 427 aa17.17■□□□□ 0.34
LDLR-206ENST00000557958 GEMP55040 296 aa17.17■□□□□ 0.34
LDLR-206ENST00000557958 CDH17Q12864 832 aa17.17■□□□□ 0.34
LDLR-206ENST00000557958 HECTD3Q5T447 861 aa17.17■□□□□ 0.34
LDLR-206ENST00000557958 CHSY1Q86X52 802 aa17.17■□□□□ 0.34
LDLR-206ENST00000557958 ZNF683Q8IZ20 524 aa17.17■□□□□ 0.34
LDLR-206ENST00000557958 OR52K1Q8NGK4 314 aa17.17■□□□□ 0.34
LDLR-206ENST00000557958 RPRD1AQ96P16 312 aaPredicted RBP17.17■□□□□ 0.34
LDLR-206ENST00000557958 FCRL5Q96RD9 977 aa17.17■□□□□ 0.34
LDLR-206ENST00000557958 PAIP2Q9BPZ3 127 aaKnown RBP17.17■□□□□ 0.34
LDLR-206ENST00000557958 CCSER2Q9H7U1 834 aa17.17■□□□□ 0.34
LDLR-206ENST00000557958 PLAC1Q9HBJ0 212 aa17.17■□□□□ 0.34
LDLR-206ENST00000557958 SYBUQ9NX95 663 aa17.17■□□□□ 0.34
LDLR-206ENST00000557958 TRPM5Q9NZQ8 1165 aa17.17■□□□□ 0.34
LDLR-206ENST00000557958 IPO11Q9UI26 975 aaKnown RBP17.17■□□□□ 0.34
LDLR-206ENST00000557958 YBX2Q9Y2T7 364 aaKnown RBP17.17■□□□□ 0.34
LDLR-206ENST00000557958 ATXN2Q99700 1313 aaKnown RBP17.17■□□□□ 0.34
LDLR-206ENST00000557958 GOLGA6L7A0A1B0GV03 622 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 GRM6O15303 877 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 CACNG3O60359 315 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 LILRB3O75022 631 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 PIAS1O75925 651 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 HMBSP08397 361 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 MAPKAPK2P49137 400 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 SLC11A2P49281 568 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 TWF1Q12792 350 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 FRG1Q14331 258 aaKnown RBP17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms