RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 RRM2BQ7LG56 351 aa7.93□□□□□ -1.14
NUP54-215ENST00000514313 TFAP2DQ7Z6R9 452 aa7.93□□□□□ -1.14
NUP54-215ENST00000514313 RHPN2Q8IUC4 686 aa7.93□□□□□ -1.14
NUP54-215ENST00000514313 TMTC2Q8N394 836 aa7.93□□□□□ -1.14
NUP54-215ENST00000514313 LSMEM1Q8N8F7 131 aa7.93□□□□□ -1.14
NUP54-215ENST00000514313 SCAIQ8N9R8 606 aa7.93□□□□□ -1.14
NUP54-215ENST00000514313 GATA5Q9BWX5 397 aaPredicted RBP7.93□□□□□ -1.14
NUP54-215ENST00000514313 HEMGNQ9BXL5 484 aa7.93□□□□□ -1.14
NUP54-215ENST00000514313 SYNCQ9H7C4 482 aa7.93□□□□□ -1.14
NUP54-215ENST00000514313 Q9N2J8 555 aa7.93□□□□□ -1.14
NUP54-215ENST00000514313 TXNRD2Q9NNW7 524 aa7.93□□□□□ -1.14
NUP54-215ENST00000514313 IL1RAPL1Q9NZN1 696 aa7.93□□□□□ -1.14
NUP54-215ENST00000514313 HSPB7Q9UBY9 170 aa7.93□□□□□ -1.14
NUP54-215ENST00000514313 RAPGEFL1Q9UHV5 662 aa7.93□□□□□ -1.14
NUP54-215ENST00000514313 FBXO4Q9UKT5 387 aa7.93□□□□□ -1.14
NUP54-215ENST00000514313 DTX4Q9Y2E6 619 aa7.93□□□□□ -1.14
NUP54-215ENST00000514313 H7C1Q1 480 aa7.92□□□□□ -1.14
NUP54-215ENST00000514313 FOXD2O60548 495 aaPredicted RBP7.92□□□□□ -1.14
NUP54-215ENST00000514313 TUBB4AP04350 444 aa7.92□□□□□ -1.14
NUP54-215ENST00000514313 ENO1P06733 434 aaKnown RBP7.92□□□□□ -1.14
NUP54-215ENST00000514313 PORP16435 677 aaPredicted RBP7.92□□□□□ -1.14
NUP54-215ENST00000514313 PLA2G5P39877 138 aa7.92□□□□□ -1.14
NUP54-215ENST00000514313 HADHAP40939 763 aa7.92□□□□□ -1.14
NUP54-215ENST00000514313 RPL7AP62424 266 aaKnown RBP7.92□□□□□ -1.14
NUP54-215ENST00000514313 CREB5Q02930 508 aa7.92□□□□□ -1.14
NUP54-215ENST00000514313 ZNF169Q14929 603 aaPredicted RBP7.92□□□□□ -1.14
NUP54-215ENST00000514313 FAM153CQ494X1 144 aa7.92□□□□□ -1.14
NUP54-215ENST00000514313 CC2D1BQ5T0F9 858 aaKnown RBP7.92□□□□□ -1.14
NUP54-215ENST00000514313 CEP85Q6P2H3 762 aa7.92□□□□□ -1.14
NUP54-215ENST00000514313 ZNF474Q6S9Z5 364 aaPredicted RBP7.92□□□□□ -1.14
NUP54-215ENST00000514313 SERPINA13PQ6UXR4 307 aa7.92□□□□□ -1.14
NUP54-215ENST00000514313 NEK8Q86SG6 692 aa7.92□□□□□ -1.14
NUP54-215ENST00000514313 TTC39CQ8N584 583 aa7.92□□□□□ -1.14
NUP54-215ENST00000514313 SH3RF3Q8TEJ3 882 aaPredicted RBP7.92□□□□□ -1.14
NUP54-215ENST00000514313 CADM1Q9BY67 442 aaKnown RBP7.92□□□□□ -1.14
NUP54-215ENST00000514313 ARL8BQ9NVJ2 186 aa7.92□□□□□ -1.14
NUP54-215ENST00000514313 NKIRAS2Q9NYR9 191 aa7.92□□□□□ -1.14
NUP54-215ENST00000514313 LIMA1Q9UHB6 759 aaKnown RBP7.92□□□□□ -1.14
NUP54-215ENST00000514313 SPATA31A5Q5VU36 1347 aa7.92□□□□□ -1.14
NUP54-215ENST00000514313 SPATA31A6Q5VVP1 1343 aa7.92□□□□□ -1.14
NUP54-215ENST00000514313 SPATA31A7Q8IWB4 1347 aa7.92□□□□□ -1.14
NUP54-215ENST00000514313 COL4A3Q01955 1670 aa7.92□□□□□ -1.14
NUP54-215ENST00000514313 hCG_1807616A0A1W2PRN6 198 aa7.91□□□□□ -1.14
NUP54-215ENST00000514313 PABPN1LA6NDY0 278 aaKnown RBP7.91□□□□□ -1.14
NUP54-215ENST00000514313 AGAP14A8MT82 685 aa7.91□□□□□ -1.14
NUP54-215ENST00000514313 B4DLN1 442 aa7.91□□□□□ -1.14
NUP54-215ENST00000514313 STRNO43815 780 aa7.91□□□□□ -1.14
NUP54-215ENST00000514313 GJB3O75712 270 aa7.91□□□□□ -1.14
NUP54-215ENST00000514313 HNRNPCP07910 306 aaKnown RBP eCLIP7.91□□□□□ -1.14
NUP54-215ENST00000514313 AKR1B1P15121 316 aa7.91□□□□□ -1.14
NUP54-215ENST00000514313 NFKBIAP25963 317 aa7.91□□□□□ -1.14
NUP54-215ENST00000514313 KRT20P35900 424 aa7.91□□□□□ -1.14
NUP54-215ENST00000514313 CPA2P48052 419 aa7.91□□□□□ -1.14
NUP54-215ENST00000514313 EIF3BP55884 814 aaKnown RBP7.91□□□□□ -1.14
NUP54-215ENST00000514313 NLRP5P59047 1200 aa7.91□□□□□ -1.14
NUP54-215ENST00000514313 MC1RQ01726 317 aa7.91□□□□□ -1.14
NUP54-215ENST00000514313 RHAGQ02094 409 aa7.91□□□□□ -1.14
NUP54-215ENST00000514313 WTAPQ15007 396 aa7.91□□□□□ -1.14
NUP54-215ENST00000514313 MED22Q15528 200 aa7.91□□□□□ -1.14
NUP54-215ENST00000514313 RILPL1Q5EBL4 403 aa7.91□□□□□ -1.14
NUP54-215ENST00000514313 TSTD2Q5T7W7 516 aa7.91□□□□□ -1.14
NUP54-215ENST00000514313 AADACL2Q6P093 401 aa7.91□□□□□ -1.14
NUP54-215ENST00000514313 GHDCQ8N2G8 530 aa7.91□□□□□ -1.14
NUP54-215ENST00000514313 IP6K1Q92551 441 aa7.91□□□□□ -1.14
NUP54-215ENST00000514313 HSPH1Q92598 858 aa7.91□□□□□ -1.14
NUP54-215ENST00000514313 REPS1Q96D71 796 aa7.91□□□□□ -1.14
NUP54-215ENST00000514313 CCDC17Q96LX7 622 aa7.91□□□□□ -1.14
NUP54-215ENST00000514313 FRMD8Q9BZ67 464 aaPredicted RBP7.91□□□□□ -1.14
NUP54-215ENST00000514313 CORO1CQ9ULV4 474 aaPredicted RBP7.91□□□□□ -1.14
NUP54-215ENST00000514313 KCNE2Q9Y6J6 123 aa7.91□□□□□ -1.14
NUP54-215ENST00000514313 FNDC1Q4ZHG4 1894 aaPredicted RBP7.91□□□□□ -1.14
NUP54-215ENST00000514313 EMSYQ7Z589 1322 aa7.9□□□□□ -1.14
NUP54-215ENST00000514313 C17orf113A0A1B0GUU1 675 aa7.9□□□□□ -1.14
NUP54-215ENST00000514313 TCRBV7S3A2A0A539 114 aa7.9□□□□□ -1.14
NUP54-215ENST00000514313 BTBD19C9JJ37 291 aa7.9□□□□□ -1.14
NUP54-215ENST00000514313 RRHO14718 337 aa7.9□□□□□ -1.14
NUP54-215ENST00000514313 TACC1O75410 805 aa7.9□□□□□ -1.14
NUP54-215ENST00000514313 SEC14L2O76054 403 aa7.9□□□□□ -1.14
NUP54-215ENST00000514313 ADAP00813 363 aa7.9□□□□□ -1.14
NUP54-215ENST00000514313 PBX3P40426 434 aa7.9□□□□□ -1.14
NUP54-215ENST00000514313 EFNA5P52803 228 aa7.9□□□□□ -1.14
NUP54-215ENST00000514313 SIM1P81133 766 aaPredicted RBP7.9□□□□□ -1.14
NUP54-215ENST00000514313 HOXA4Q00056 320 aaPredicted RBP7.9□□□□□ -1.14
NUP54-215ENST00000514313 TAP1Q03518 808 aa7.9□□□□□ -1.14
NUP54-215ENST00000514313 TMEM115Q12893 351 aaPredicted RBP7.9□□□□□ -1.14
NUP54-215ENST00000514313 ACVR2BQ13705 512 aa7.9□□□□□ -1.14
NUP54-215ENST00000514313 SZRD1Q7Z422 152 aa7.9□□□□□ -1.14
NUP54-215ENST00000514313 SPRED1Q7Z699 444 aa7.9□□□□□ -1.14
NUP54-215ENST00000514313 RPAP2Q8IXW5 612 aaPredicted RBP7.9□□□□□ -1.14
NUP54-215ENST00000514313 CPXM2Q8N436 756 aa7.9□□□□□ -1.14
NUP54-215ENST00000514313 PAQR4Q8N4S7 273 aaPredicted RBP7.9□□□□□ -1.14
NUP54-215ENST00000514313 OR52N4Q8NGI2 321 aa7.9□□□□□ -1.14
NUP54-215ENST00000514313 PLSCR4Q9NRQ2 329 aa7.9□□□□□ -1.14
NUP54-215ENST00000514313 HCFC1R1Q9NWW0 138 aa7.9□□□□□ -1.14
NUP54-215ENST00000514313 LYVE1Q9Y5Y7 322 aa7.9□□□□□ -1.14
NUP54-215ENST00000514313 OR6C68A6NDL8 312 aa7.89□□□□□ -1.15
NUP54-215ENST00000514313 PTGES3LE9PB15 166 aa7.89□□□□□ -1.15
NUP54-215ENST00000514313 STARD3NLO95772 234 aa7.89□□□□□ -1.15
NUP54-215ENST00000514313 MAKP20794 623 aa7.89□□□□□ -1.15
NUP54-215ENST00000514313 SOX2P48431 317 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms