RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 TSC22D4Q9Y3Q8 395 aa8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 A0A0A6YYK5 440 aaPredicted RBP8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 FBXO21O94952 628 aa8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 VNN2O95498 520 aa8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 CSH1P0DML2 217 aa8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 CSH2P0DML3 217 aa8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 ESRRAP11474 423 aaPredicted RBP8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 GOT1P17174 413 aa8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 NELFEP18615 380 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 CDH5P33151 784 aaPredicted RBP8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 VHLP40337 213 aa8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 PSMD7P51665 324 aa8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 HDAC4P56524 1084 aa8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 C6orf163Q5TEZ5 329 aa8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 RAP1GAP2Q684P5 730 aa8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 LRIG3Q6UXM1 1119 aa8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 SLFN11Q7Z7L1 901 aa8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 SCD5Q86SK9 330 aa8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 RASSF3Q86WH2 238 aa8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 TMCO5AQ8N6Q1 288 aa8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 GBP7Q8N8V2 638 aaPredicted RBP8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 FUBP3Q96I24 572 aaKnown RBP eCLIP8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 CLPTM1LQ96KA5 538 aa8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 SLC22A12Q96S37 553 aa8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 CENPKQ9BS16 269 aa8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 OSBPL8Q9BZF1 889 aa8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 ZNF576Q9H609 170 aa8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 ZNF334Q9HCZ1 680 aaPredicted RBP8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 BLOC1S6Q9UL45 172 aa8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 ATG2BQ96BY7 2078 aa8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 NUP205Q92621 2012 aa8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 H3BQ06 376 aaPredicted RBP8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 NRLP54845 237 aa8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 TBX4P57082 545 aa8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 MRPL58Q14197 206 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 CYTH1Q15438 398 aa8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 RAB30Q15771 203 aa8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 DCAF12L1Q5VU92 463 aa8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 MON1AQ86VX9 555 aa8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 JAMLQ86YT9 394 aa8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 USP33Q8TEY7 942 aa8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 ZNF317Q96PQ6 595 aaPredicted RBP8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 PABPC3Q9H361 631 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 NENFQ9UMX5 172 aa8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 MRPS23Q9Y3D9 190 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 MFHAS1Q9Y4C4 1052 aa8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 PCDHA11Q9Y5I1 949 aa8.88□□□□□ -0.99
LIMCH1-209ENST00000509277 PDCD11Q14690 1871 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 MYOCOSA0A1B0GUC4 107 aa8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 HHLA1C9JL84 531 aa8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 H3BRJ5 948 aa8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 LINC01565O15544 149 aa8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 APOEP02649 317 aa8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 ENO1P06733 434 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 KRT7P08729 469 aa8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 AVPR1AP37288 418 aa8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 TPI1P60174 286 aa8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 SMAD3P84022 425 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 CBX3Q13185 183 aa8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 RAB33AQ14088 237 aa8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 ITIH4Q14624 930 aa8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 ARL13BQ3SXY8 428 aa8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 C1QTNF12Q5T7M4 302 aa8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 GPR158Q5T848 1215 aa8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 EXOC3L1Q86VI1 746 aa8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 ARFGAP1Q8N6T3 406 aa8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 SLC26A7Q8TE54 656 aa8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 CLP1Q92989 425 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 RPRD1AQ96P16 312 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 THTPAQ9BU02 230 aa8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 ABCC13Q9NSE7 274 aa8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 TMEM59LQ9UK28 342 aa8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 ANKRD33BA6NCL7 494 aa8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 A6NHS1 94 aa8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 DFFAO00273 331 aa8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 PEX11AO75192 247 aa8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 ENDOD1O94919 500 aa8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 GSTA1P08263 222 aa8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 ATP5C1P36542 298 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 MCCD1P59942 119 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 IL9RQ01113 521 aa8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 CNPY1Q3B7I2 92 aa8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 HECTD3Q5T447 861 aa8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 C1orf146Q5VVC0 180 aa8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 ST13P4Q8IZP2 240 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 TUBGCP5Q96RT8 1024 aa8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 SPON2Q9BUD6 331 aa8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 RXFP1Q9HBX9 757 aa8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 APPL1Q9UKG1 709 aa8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 BACE2Q9Y5Z0 518 aa8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 MYO18AQ92614 2054 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 ATXN2Q99700 1313 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-209ENST00000509277 MIF4GDA9UHW6 222 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 SGK1O00141 431 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 EEF2KO00418 725 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 ZSCAN9O15535 394 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 UNC5CO95185 931 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 FYNP06241 537 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 EIF3BP55884 814 aaKnown RBP8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms