RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 CCT4P50991 539 aaKnown RBP4.83□□□□□ -1.64
CCDC54-201ENST00000261058 GOLGA8FQ08AF8 430 aa4.83□□□□□ -1.64
CCDC54-201ENST00000261058 STIM1Q13586 685 aa4.83□□□□□ -1.64
CCDC54-201ENST00000261058 PKP1Q13835 747 aa4.83□□□□□ -1.64
CCDC54-201ENST00000261058 RPE65Q16518 533 aa4.83□□□□□ -1.64
CCDC54-201ENST00000261058 ASPHD1Q5U4P2 390 aa4.83□□□□□ -1.64
CCDC54-201ENST00000261058 ISM2Q6H9L7 571 aa4.83□□□□□ -1.64
CCDC54-201ENST00000261058 MIS18BP1Q6P0N0 1132 aa4.83□□□□□ -1.64
CCDC54-201ENST00000261058 LRIG3Q6UXM1 1119 aa4.83□□□□□ -1.64
CCDC54-201ENST00000261058 SCAIQ8N9R8 606 aa4.83□□□□□ -1.64
CCDC54-201ENST00000261058 RFWD2Q8NHY2 731 aa4.83□□□□□ -1.64
CCDC54-201ENST00000261058 TBC1D22AQ8WUA7 517 aa4.83□□□□□ -1.64
CCDC54-201ENST00000261058 RAB40AQ8WXH6 277 aa4.83□□□□□ -1.64
CCDC54-201ENST00000261058 CADM1Q9BY67 442 aaKnown RBP4.83□□□□□ -1.64
CCDC54-201ENST00000261058 PAIP1Q9H074 479 aaKnown RBP4.83□□□□□ -1.64
CCDC54-201ENST00000261058 TTC12Q9H892 705 aaPredicted RBP4.83□□□□□ -1.64
CCDC54-201ENST00000261058 BEX4Q9NWD9 120 aaPredicted RBP4.83□□□□□ -1.64
CCDC54-201ENST00000261058 FRMD4BQ9Y2L6 1034 aa4.83□□□□□ -1.64
CCDC54-201ENST00000261058 CYP46A1Q9Y6A2 500 aa4.83□□□□□ -1.64
CCDC54-201ENST00000261058 MST1RQ04912 1400 aa4.83□□□□□ -1.64
CCDC54-201ENST00000261058 A0A0G2JK05 382 aa4.82□□□□□ -1.64
CCDC54-201ENST00000261058 KIR2DS5A0A0G2JLQ3 304 aa4.82□□□□□ -1.64
CCDC54-201ENST00000261058 C11orf97A0A1B0GVM6 126 aaPredicted RBP4.82□□□□□ -1.64
CCDC54-201ENST00000261058 TCRBV7S3A2A0A539 114 aa4.82□□□□□ -1.64
CCDC54-201ENST00000261058 KIR2DS3K7RE56 304 aa4.82□□□□□ -1.64
CCDC54-201ENST00000261058 MSI1O43347 362 aaKnown RBP4.82□□□□□ -1.64
CCDC54-201ENST00000261058 TLX3O43711 291 aaPredicted RBP4.82□□□□□ -1.64
CCDC54-201ENST00000261058 TLR2O60603 784 aa4.82□□□□□ -1.64
CCDC54-201ENST00000261058 DDAH2O95865 285 aa4.82□□□□□ -1.64
CCDC54-201ENST00000261058 CHRM4P08173 479 aa4.82□□□□□ -1.64
CCDC54-201ENST00000261058 FCGR2AP12318 317 aa4.82□□□□□ -1.64
CCDC54-201ENST00000261058 IRX6P78412 446 aaPredicted RBP4.82□□□□□ -1.64
CCDC54-201ENST00000261058 GHRHRQ02643 423 aa4.82□□□□□ -1.64
CCDC54-201ENST00000261058 SRSF1Q07955 248 aaKnown RBP eCLIP4.82□□□□□ -1.64
CCDC54-201ENST00000261058 GALNT2Q10471 571 aa4.82□□□□□ -1.64
CCDC54-201ENST00000261058 G3BP1Q13283 466 aaKnown RBP eCLIP4.82□□□□□ -1.64
CCDC54-201ENST00000261058 IL13RA2Q14627 380 aa4.82□□□□□ -1.64
CCDC54-201ENST00000261058 AP5B1Q2VPB7 878 aa4.82□□□□□ -1.64
CCDC54-201ENST00000261058 SUPT20HL1Q3ZLR7 823 aa4.82□□□□□ -1.64
CCDC54-201ENST00000261058 C5orf22Q49AR2 442 aa4.82□□□□□ -1.64
CCDC54-201ENST00000261058 MIDNQ504T8 468 aa4.82□□□□□ -1.64
CCDC54-201ENST00000261058 ZNF766Q5HY98 468 aa4.82□□□□□ -1.64
CCDC54-201ENST00000261058 TBC1D9BQ66K14 1250 aa4.82□□□□□ -1.64
CCDC54-201ENST00000261058 TTLL5Q6EMB2 1281 aa4.82□□□□□ -1.64
CCDC54-201ENST00000261058 SLC18B1Q6NT16 456 aa4.82□□□□□ -1.64
CCDC54-201ENST00000261058 SYCE2Q6PIF2 218 aa4.82□□□□□ -1.64
CCDC54-201ENST00000261058 YTHDF3Q7Z739 585 aaKnown RBP4.82□□□□□ -1.64
CCDC54-201ENST00000261058 SRRM1Q8IYB3 904 aaKnown RBP4.82□□□□□ -1.64
CCDC54-201ENST00000261058 TMEM217Q8N7C4 229 aa4.82□□□□□ -1.64
CCDC54-201ENST00000261058 ZCCHC10Q8TBK6 192 aa4.82□□□□□ -1.64
CCDC54-201ENST00000261058 COQ8BQ96D53 544 aa4.82□□□□□ -1.64
CCDC54-201ENST00000261058 RNF125Q96EQ8 232 aa4.82□□□□□ -1.64
CCDC54-201ENST00000261058 RRP36Q96EU6 259 aaKnown RBP4.82□□□□□ -1.64
CCDC54-201ENST00000261058 CD180Q99467 661 aa4.82□□□□□ -1.64
CCDC54-201ENST00000261058 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP4.82□□□□□ -1.64
CCDC54-201ENST00000261058 MROH8Q9H579 483 aa4.82□□□□□ -1.64
CCDC54-201ENST00000261058 SPAG4Q9NPE6 437 aa4.82□□□□□ -1.64
CCDC54-201ENST00000261058 HCN3Q9P1Z3 774 aa4.82□□□□□ -1.64
CCDC54-201ENST00000261058 FBXO40Q9UH90 709 aa4.82□□□□□ -1.64
CCDC54-201ENST00000261058 IPO11Q9UI26 975 aaKnown RBP4.82□□□□□ -1.64
CCDC54-201ENST00000261058 CNOT7Q9UIV1 285 aaKnown RBP4.82□□□□□ -1.64
CCDC54-201ENST00000261058 TRBV5-7A0A0A0MS05 114 aa4.81□□□□□ -1.64
CCDC54-201ENST00000261058 FOXO6A8MYZ6 492 aa4.81□□□□□ -1.64
CCDC54-201ENST00000261058 B4E171 279 aa4.81□□□□□ -1.64
CCDC54-201ENST00000261058 EPB41L2O43491 1005 aaKnown RBP4.81□□□□□ -1.64
CCDC54-201ENST00000261058 WDHD1O75717 1129 aaPredicted RBP4.81□□□□□ -1.64
CCDC54-201ENST00000261058 F9P00740 461 aa4.81□□□□□ -1.64
CCDC54-201ENST00000261058 PRKCHP24723 683 aa4.81□□□□□ -1.64
CCDC54-201ENST00000261058 CD38P28907 300 aa4.81□□□□□ -1.64
CCDC54-201ENST00000261058 CHRNA5P30532 468 aa4.81□□□□□ -1.64
CCDC54-201ENST00000261058 ELF1P32519 619 aa4.81□□□□□ -1.64
CCDC54-201ENST00000261058 TSPAN7P41732 249 aa4.81□□□□□ -1.64
CCDC54-201ENST00000261058 DDX10Q13206 875 aaKnown RBP4.81□□□□□ -1.64
CCDC54-201ENST00000261058 CAMK1Q14012 370 aa4.81□□□□□ -1.64
CCDC54-201ENST00000261058 GALNT3Q14435 633 aa4.81□□□□□ -1.64
CCDC54-201ENST00000261058 SLC18A3Q16572 532 aa4.81□□□□□ -1.64
CCDC54-201ENST00000261058 COLEC12Q5KU26 742 aa4.81□□□□□ -1.64
CCDC54-201ENST00000261058 FAM171A1Q5VUB5 890 aa4.81□□□□□ -1.64
CCDC54-201ENST00000261058 C17orf99Q6UX52 265 aa4.81□□□□□ -1.64
CCDC54-201ENST00000261058 DNAJC10Q8IXB1 793 aa4.81□□□□□ -1.64
CCDC54-201ENST00000261058 DDIASQ8IXT1 998 aa4.81□□□□□ -1.64
CCDC54-201ENST00000261058 ZNF366Q8N895 744 aa4.81□□□□□ -1.64
CCDC54-201ENST00000261058 RFFLQ8WZ73 363 aa4.81□□□□□ -1.64
CCDC54-201ENST00000261058 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.81□□□□□ -1.64
CCDC54-201ENST00000261058 EPHX3Q9H6B9 360 aa4.81□□□□□ -1.64
CCDC54-201ENST00000261058 PREBQ9HCU5 417 aa4.81□□□□□ -1.64
CCDC54-201ENST00000261058 ZNF304Q9HCX3 659 aa4.81□□□□□ -1.64
CCDC54-201ENST00000261058 SEMA4BQ9NPR2 832 aaPredicted RBP4.81□□□□□ -1.64
CCDC54-201ENST00000261058 PTGFRNQ9P2B2 879 aa4.81□□□□□ -1.64
CCDC54-201ENST00000261058 ICKQ9UPZ9 632 aa4.81□□□□□ -1.64
CCDC54-201ENST00000261058 LAMP3Q9UQV4 416 aa4.81□□□□□ -1.64
CCDC54-201ENST00000261058 OR6C68A6NDL8 312 aa4.8□□□□□ -1.64
CCDC54-201ENST00000261058 TEX22C9J3V5 150 aa4.8□□□□□ -1.64
CCDC54-201ENST00000261058 F8W810 466 aa4.8□□□□□ -1.64
CCDC54-201ENST00000261058 PRPF4O43172 522 aaKnown RBP eCLIP4.8□□□□□ -1.64
CCDC54-201ENST00000261058 HBP1O60381 514 aa4.8□□□□□ -1.64
CCDC54-201ENST00000261058 NFATC1O95644 943 aa4.8□□□□□ -1.64
CCDC54-201ENST00000261058 ATP1A3P13637 1013 aa4.8□□□□□ -1.64
CCDC54-201ENST00000261058 ABCD3P28288 659 aa4.8□□□□□ -1.64
CCDC54-201ENST00000261058 ARHGAP25P42331 645 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 90 ms