RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 HINFPQ9BQA5 517 aa13.36□□□□□ -0.27
CLK3-224ENST00000568605 C2orf49Q9BVC5 232 aaPredicted RBP13.36□□□□□ -0.27
CLK3-224ENST00000568605 THAP2Q9H0W7 228 aa13.36□□□□□ -0.27
CLK3-224ENST00000568605 ANLNQ9NQW6 1124 aa13.36□□□□□ -0.27
CLK3-224ENST00000568605 TMPRSS4Q9NRS4 437 aa13.36□□□□□ -0.27
CLK3-224ENST00000568605 DONSONQ9NYP3 566 aa13.36□□□□□ -0.27
CLK3-224ENST00000568605 NCDNQ9UBB6 729 aa13.36□□□□□ -0.27
CLK3-224ENST00000568605 SUN2Q9UH99 717 aa13.36□□□□□ -0.27
CLK3-224ENST00000568605 HCN2Q9UL51 889 aa13.36□□□□□ -0.27
CLK3-224ENST00000568605 TBC1D30Q9Y2I9 924 aa13.36□□□□□ -0.27
CLK3-224ENST00000568605 RAD54BQ9Y620 910 aa13.36□□□□□ -0.27
CLK3-224ENST00000568605 A0A1W2PQF6 199 aa13.35□□□□□ -0.27
CLK3-224ENST00000568605 DRGXA6NNA5 263 aa13.35□□□□□ -0.27
CLK3-224ENST00000568605 ZNF217O75362 1048 aa13.35□□□□□ -0.27
CLK3-224ENST00000568605 H2AFZP0C0S5 128 aa13.35□□□□□ -0.27
CLK3-224ENST00000568605 GABRG2P18507 467 aa13.35□□□□□ -0.27
CLK3-224ENST00000568605 PRKCHP24723 683 aa13.35□□□□□ -0.27
CLK3-224ENST00000568605 L1CAMP32004 1257 aa13.35□□□□□ -0.27
CLK3-224ENST00000568605 MAPKAPK2P49137 400 aa13.35□□□□□ -0.27
CLK3-224ENST00000568605 IRAK1P51617 712 aa13.35□□□□□ -0.27
CLK3-224ENST00000568605 PLK1P53350 603 aa13.35□□□□□ -0.27
CLK3-224ENST00000568605 ECT2LQ008S8 904 aa13.35□□□□□ -0.27
CLK3-224ENST00000568605 OGDHQ02218 1023 aa13.35□□□□□ -0.27
CLK3-224ENST00000568605 TBX2Q13207 712 aaPredicted RBP13.35□□□□□ -0.27
CLK3-224ENST00000568605 PIGHQ14442 188 aaPredicted RBP13.35□□□□□ -0.27
CLK3-224ENST00000568605 PTPRNQ16849 979 aa13.35□□□□□ -0.27
CLK3-224ENST00000568605 ALFQ53S48 1182 aa13.35□□□□□ -0.27
CLK3-224ENST00000568605 RWDD4Q6NW29 188 aaKnown RBP13.35□□□□□ -0.27
CLK3-224ENST00000568605 H2AFVQ71UI9 128 aa13.35□□□□□ -0.27
CLK3-224ENST00000568605 TFAP2DQ7Z6R9 452 aa13.35□□□□□ -0.27
CLK3-224ENST00000568605 C14orf80Q86SX3 495 aa13.35□□□□□ -0.27
CLK3-224ENST00000568605 ZNF683Q8IZ20 524 aa13.35□□□□□ -0.27
CLK3-224ENST00000568605 LMLNQ96KR4 655 aa13.35□□□□□ -0.27
CLK3-224ENST00000568605 NUP85Q9BW27 656 aa13.35□□□□□ -0.27
CLK3-224ENST00000568605 NHEJ1Q9H9Q4 299 aaPredicted RBP13.35□□□□□ -0.27
CLK3-224ENST00000568605 LUC7LQ9NQ29 371 aaKnown RBP13.35□□□□□ -0.27
CLK3-224ENST00000568605 UVRAGQ9P2Y5 699 aa13.35□□□□□ -0.27
CLK3-224ENST00000568605 IP6K2Q9UHH9 426 aa13.35□□□□□ -0.27
CLK3-224ENST00000568605 ANAPC7Q9UJX3 599 aa13.35□□□□□ -0.27
CLK3-224ENST00000568605 INTS6Q9UL03 887 aaKnown RBP13.35□□□□□ -0.27
CLK3-224ENST00000568605 AP4E1Q9UPM8 1137 aa13.35□□□□□ -0.27
CLK3-224ENST00000568605 ERVW-1Q9UQF0 538 aa13.35□□□□□ -0.27
CLK3-224ENST00000568605 VPS13AQ96RL7 3174 aa13.34□□□□□ -0.27
CLK3-224ENST00000568605 EDDM13A0A1B0GTR0 161 aa13.34□□□□□ -0.27
CLK3-224ENST00000568605 WASH3PC4AMC7 463 aa13.34□□□□□ -0.27
CLK3-224ENST00000568605 FGF10O15520 208 aaPredicted RBP13.34□□□□□ -0.27
CLK3-224ENST00000568605 CNTN5O94779 1100 aa13.34□□□□□ -0.27
CLK3-224ENST00000568605 LRIG2O94898 1065 aa13.34□□□□□ -0.27
CLK3-224ENST00000568605 CYP1A2P05177 515 aa13.34□□□□□ -0.27
CLK3-224ENST00000568605 ACADMP11310 421 aa13.34□□□□□ -0.27
CLK3-224ENST00000568605 RHOQP17081 205 aa13.34□□□□□ -0.27
CLK3-224ENST00000568605 NDUFV2P19404 249 aa13.34□□□□□ -0.27
CLK3-224ENST00000568605 ZNF135P52742 658 aaPredicted RBP13.34□□□□□ -0.27
CLK3-224ENST00000568605 GALCP54803 685 aa13.34□□□□□ -0.27
CLK3-224ENST00000568605 TPI1P60174 286 aa13.34□□□□□ -0.27
CLK3-224ENST00000568605 CAMK2GQ13555 558 aaPredicted RBP13.34□□□□□ -0.27
CLK3-224ENST00000568605 TTC31Q49AM3 519 aaPredicted RBP13.34□□□□□ -0.27
CLK3-224ENST00000568605 MANEALQ5VSG8 457 aa13.34□□□□□ -0.27
CLK3-224ENST00000568605 KIAA1211LQ6NV74 962 aa13.34□□□□□ -0.27
CLK3-224ENST00000568605 KIAA1324Q6UXG2 1013 aaKnown RBP13.34□□□□□ -0.27
CLK3-224ENST00000568605 GAS2L3Q86XJ1 694 aa13.34□□□□□ -0.27
CLK3-224ENST00000568605 DNAAF5Q86Y56 855 aa13.34□□□□□ -0.27
CLK3-224ENST00000568605 PSTKQ8IV42 348 aaKnown RBP13.34□□□□□ -0.27
CLK3-224ENST00000568605 DCAF4L2Q8NA75 395 aa13.34□□□□□ -0.27
CLK3-224ENST00000568605 OR2T3Q8NH03 318 aa13.34□□□□□ -0.27
CLK3-224ENST00000568605 ZNF564Q8TBZ8 553 aaPredicted RBP13.34□□□□□ -0.27
CLK3-224ENST00000568605 PRCCQ92733 491 aaPredicted RBP13.34□□□□□ -0.27
CLK3-224ENST00000568605 FEM1AQ9BSK4 669 aa13.34□□□□□ -0.27
CLK3-224ENST00000568605 TMEM245Q9H330 911 aa13.34□□□□□ -0.27
CLK3-224ENST00000568605 CATSPERBQ9H7T0 1116 aa13.34□□□□□ -0.27
CLK3-224ENST00000568605 PRDM16Q9HAZ2 1276 aa13.34□□□□□ -0.27
CLK3-224ENST00000568605 TMEM248Q9NWD8 314 aa13.34□□□□□ -0.27
CLK3-224ENST00000568605 MPP6Q9NZW5 540 aa13.34□□□□□ -0.27
CLK3-224ENST00000568605 CTTNBP2NLQ9P2B4 639 aa13.34□□□□□ -0.27
CLK3-224ENST00000568605 FZD10Q9ULW2 581 aa13.34□□□□□ -0.27
CLK3-224ENST00000568605 NENFQ9UMX5 172 aa13.34□□□□□ -0.27
CLK3-224ENST00000568605 SNX10Q9Y5X0 201 aa13.34□□□□□ -0.27
CLK3-224ENST00000568605 RIF1Q5UIP0 2472 aaKnown RBP13.34□□□□□ -0.27
CLK3-224ENST00000568605 PLXNA2O75051 1894 aa13.33□□□□□ -0.27
CLK3-224ENST00000568605 SDK1Q7Z5N4 2213 aa13.33□□□□□ -0.27
CLK3-224ENST00000568605 ADAMTS9Q9P2N4 1935 aa13.33□□□□□ -0.28
CLK3-224ENST00000568605 NUMA1Q14980 2115 aa13.33□□□□□ -0.28
CLK3-224ENST00000568605 ILVBLA1L0T0 632 aa13.33□□□□□ -0.28
CLK3-224ENST00000568605 MYO1FO00160 1098 aa13.33□□□□□ -0.28
CLK3-224ENST00000568605 AP5Z1O43299 807 aa13.33□□□□□ -0.28
CLK3-224ENST00000568605 HRO43593 1189 aa13.33□□□□□ -0.28
CLK3-224ENST00000568605 RNASEH1O60930 286 aaKnown RBP13.33□□□□□ -0.28
CLK3-224ENST00000568605 LRCH4O75427 683 aa13.33□□□□□ -0.28
CLK3-224ENST00000568605 RHOBTB1O94844 696 aa13.33□□□□□ -0.28
CLK3-224ENST00000568605 IPO7O95373 1038 aaKnown RBP13.33□□□□□ -0.28
CLK3-224ENST00000568605 TMEM253P0C7T8 217 aa13.33□□□□□ -0.28
CLK3-224ENST00000568605 HLA-EP13747 358 aa13.33□□□□□ -0.28
CLK3-224ENST00000568605 MZF1P28698 734 aaPredicted RBP13.33□□□□□ -0.28
CLK3-224ENST00000568605 EPHB2P29323 1055 aa13.33□□□□□ -0.28
CLK3-224ENST00000568605 PCK1P35558 622 aa13.33□□□□□ -0.28
CLK3-224ENST00000568605 GEMIN4P57678 1058 aaKnown RBP13.33□□□□□ -0.28
CLK3-224ENST00000568605 ZNF252P-AS1Q0IIN9 211 aa13.33□□□□□ -0.28
CLK3-224ENST00000568605 SFSWAPQ12872 951 aaKnown RBP13.33□□□□□ -0.28
CLK3-224ENST00000568605 HNRNPA1L2Q32P51 320 aaKnown RBP13.33□□□□□ -0.28
CLK3-224ENST00000568605 RAB6CQ53S08 254 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms